AT3G13710

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013965
Physical Location & Seq
Reverse (-)
4490628 .. 4493831
3204 bp
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UTR
Exon/CDS
Intron
AT3G13710.1

Sequence Viewer

Length: 567 bp
ATGGCGAACAACGACGAGATTACCACGTCGTCTCATGCATCTCCGGCAGTGAATCACGAGTCTATCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCGCTCCTGGAGGGTGATGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATGTTTTCTCAAGAATCAAGACAAATCTTGCTTACTTCCGTAGTAATTACGCAATCGTAATCTTGAACGTCATATTCTTCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTTACCGGTTTGGTTTTCCTATGGATCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTCAGGTTTCAAATCGACGATCGTGCGGTCTTGATTGGTCTATCGGTGATTACCATCGTTCTACTTCTATTGACCAACGCGACGTTTAATATTGTTGCGGCGTTGATGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGATTAGGAAGACGGATGATCTTTTTTTGGATGAAGAAGCGGCGACGACTGAGACTTCAGGACTGACGTCACACCCTTCGTCTTAA

Protein Analysis

188

Amino Acids

21.0

Weight (kDa)

8.15

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 32 - 173 2.1e-47 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55190 AT3G13710 AT3G13720
malus_domestica MD02G1076900.v1.1 MD15G1205600.v1.1
prunus_persica Prupe.7G211500_v2.0.a1
pyrus_communis pycom02g06150 pycom15g18240
rosa_chinensis RchiOBHm_Chr2g0093141
rosa_laevigata RLG00000016372
rosa_roxburghii Rroxscaffold_2G00148470
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078800 Rh2BG080100 Rh2CG082300 Rh2DG077800
rosa_wichuraiana Rw2G006770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 551
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 3 cut(s) 72, 106, 422
AciI CCGC 5 cut(s) 109, 368, 440, 479, 521
AclWI GGATC 2 cut(s) 311, 466
AcoI YGGCCR 1 cut(s) 450
AcuI CTGAAG 2 cut(s) 229, 522
AcyI GRCGYC 2 cut(s) 159, 548
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 2 cut(s) 232, 353
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 2 cut(s) 249, 458
AluI AGCT 2 cut(s) 249, 458
Alw26I GTCTC 3 cut(s) 36, 166, 527
AlwI GGATC 2 cut(s) 311, 466
AoxI GGCC 1 cut(s) 450
AsiGI ACCGGT 1 cut(s) 284
AspLEI GCGC 2 cut(s) 74, 108
AsuHPI GGTGA 3 cut(s) 133, 400, 493
BauI CACGAG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 497
BccI CCATC 2 cut(s) 404, 442
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 36, 166, 527
BfaI CTAG 1 cut(s) 98
BisI GCNGC 3 cut(s) 109, 441, 522
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 3 cut(s) 110, 442, 523
Bme1390I CCNGG 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 47, 268
BoxI GACNNNNGTC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 497
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 136
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 160, 320
BsaBI GATNNNNATC 1 cut(s) 395
BsaHI GRCGYC 2 cut(s) 159, 548
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse118I RCCGGY 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 395
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 259, 502, 517
BseJI GATNNNNATC 1 cut(s) 395
BseMII CTCAG 1 cut(s) 522
Bsh1236I CGCG 3 cut(s) 72, 106, 422
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 1 cut(s) 452
BshTI ACCGGT 1 cut(s) 284
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 3 cut(s) 44, 285, 453
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 36, 166, 527
BsmBI CGTCTC 2 cut(s) 36, 166
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 452
Bsp143I GATC 4 cut(s) 303, 361, 471, 499
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 5 cut(s) 109, 368, 440, 479, 521
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 3 cut(s) 72, 106, 422
BspPI GGATC 2 cut(s) 311, 466
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 4 cut(s) 303, 361, 471, 499
BssNI GRCGYC 2 cut(s) 159, 548
BssSI CACGAG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 115
BstACI GRCGYC 2 cut(s) 159, 548
BstDEI CTNAG 2 cut(s) 75, 531
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 259, 502, 517
BstFNI CGCG 3 cut(s) 72, 106, 422
BstHHI GCGC 2 cut(s) 74, 108
BstKTI GATC 4 cut(s) 306, 364, 474, 502
BstMAI GTCTC 3 cut(s) 36, 166, 527
BstMBI GATC 4 cut(s) 303, 361, 471, 499
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 44, 449
BstNI CCWGG 1 cut(s) 115
BstPAI GACNNNNGTC 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 113
BstUI CGCG 3 cut(s) 72, 106, 422
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 259, 502, 517
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 2 cut(s) 74, 108
Cfr10I RCCGGY 1 cut(s) 284
CseI GACGC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 2 cut(s) 35, 476
CviJI RGCY 4 cut(s) 101, 249, 452, 458
CviKI_1 RGCY 4 cut(s) 101, 249, 452, 458
DdeI CTNAG 2 cut(s) 75, 531
DpnI GATC 4 cut(s) 305, 363, 473, 501
DpnII GATC 4 cut(s) 303, 361, 471, 499
EaeI YGGCCR 1 cut(s) 450
Eco57I CTGAAG 2 cut(s) 229, 522
EcoRII CCWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 40
Esp3I CGTCTC 2 cut(s) 36, 166
FaeI CATG 2 cut(s) 38, 479
FaiI YATR 4 cut(s) 36, 239, 301, 477
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 34, 475
Fnu4HI GCNGC 3 cut(s) 109, 441, 522
FokI GGATG 3 cut(s) 246, 509, 524
Fsp4HI GCNGC 3 cut(s) 109, 441, 522
FspBI CTAG 1 cut(s) 98
GlaI GCGC 2 cut(s) 73, 107
GluI GCNGC 3 cut(s) 109, 441, 522
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 1 cut(s) 452
HapII CCGG 3 cut(s) 44, 285, 453
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 74, 108
Hin1I GRCGYC 2 cut(s) 159, 548
Hin1II CATG 2 cut(s) 38, 479
Hin6I GCGC 2 cut(s) 72, 106
HinP1I GCGC 2 cut(s) 72, 106
HinfI GANTC 3 cut(s) 52, 59, 180
HpaII CCGG 3 cut(s) 44, 285, 453
HphI GGTGA 3 cut(s) 133, 400, 493
Hpy188I TCNGA 3 cut(s) 166, 264, 471
Hpy188III TCNNGA 6 cut(s) 56, 177, 184, 229, 373, 540
Hpy99I CGWCG 5 cut(s) 17, 31, 362, 427, 529
HpyAV CCTTC 1 cut(s) 567
HpyCH4IV ACGT 5 cut(s) 26, 82, 234, 425, 548
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 449
HpyF3I CTNAG 2 cut(s) 75, 531
HpySE526I ACGT 5 cut(s) 26, 82, 234, 425, 548
Hsp92I GRCGYC 2 cut(s) 159, 548
Hsp92II CATG 2 cut(s) 38, 479
HspAI GCGC 2 cut(s) 72, 106
Kzo9I GATC 4 cut(s) 303, 361, 471, 499
LmnI GCTCC 2 cut(s) 116, 455
LpnPI CCDG 7 cut(s) 57, 100, 127, 298, 331, 466, 525
LweI GCATC 2 cut(s) 47, 268
MaeI CTAG 1 cut(s) 98
MaeII ACGT 5 cut(s) 26, 82, 234, 425, 548
MaeIII GTNAC 1 cut(s) 549
MalI GATC 4 cut(s) 305, 363, 473, 501
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 303, 361, 471, 499
MboII GAAGA 4 cut(s) 235, 298, 502, 527
MflI RGATCY 1 cut(s) 303
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 4 cut(s) 111, 162, 277, 342
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 2 cut(s) 429, 565
MspI CCGG 3 cut(s) 44, 285, 453
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MvnI CGCG 3 cut(s) 72, 106, 422
MwoI GCNNNNNNNGC 2 cut(s) 44, 449
NdeII GATC 4 cut(s) 303, 361, 471, 499
NlaIII CATG 2 cut(s) 38, 479
NmuCI GTSAC 1 cut(s) 549
NsiI ATGCAT 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 2 cut(s) 52, 180
PfoI TCCNGGA 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 3 cut(s) 110, 442, 523
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PshAI GACNNNNGTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 303
PvuI CGATCG 1 cut(s) 364
SaqAI TTAA 2 cut(s) 429, 565
SatI GCNGC 3 cut(s) 109, 441, 522
Sau3AI GATC 4 cut(s) 303, 361, 471, 499
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 115
SfaNI GCATC 2 cut(s) 47, 268
SmlI CTYRAG 2 cut(s) 175, 335
SmoI CTYRAG 2 cut(s) 175, 335
Sse9I AATT 1 cut(s) 211
SsiI CCGC 5 cut(s) 109, 368, 440, 479, 521
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 113
TaiI ACGT 5 cut(s) 29, 85, 237, 428, 551
TaqI TCGA 2 cut(s) 129, 357
TasI AATT 1 cut(s) 211
TauI GCSGC 3 cut(s) 111, 443, 524
TfiI GAWTC 2 cut(s) 52, 180
Tru1I TTAA 2 cut(s) 429, 565
Tru9I TTAA 2 cut(s) 429, 565
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 549
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 4 cut(s) 108, 194, 311, 509
TspRI CASTG 1 cut(s) 54
XspI CTAG 1 cut(s) 98
ZraI GACGTC 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.