Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Forward (+)

20614573 .. 20616466

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATCCCATCATCCAACCAATACGTCGACACTCACAGAGTCACAGAGGACAGAGCCATATATATACACGAACATACAAAGAGACTAGAGGACACGTTTCTATCTAGAGAGAACACAACACATCGAACCATGGAGAAATCAACAAGAACCCTATTCATAACCATCGTGATAACCTCCATGTTGCTAGGGTTTGGAAACTCTGATCTTGCTCAGGACAGAGAGGAGTGTACGAACCAGCTCATAGAACTATCCACGTGTATTCCGTACGTTGGAGGAGACGCCAAGGCTCCAACAAAAGATTGTTGTGCAGGGTTTGGCCAAGTTATAAGAAAGAGTGAGAAGTGTGTTTGCATATTGGTCAGAGACAAAGATGATCCTCAACTTGGTATCAAGATTAACGCAACCCTAGCCGCTCATCTTCCCTCCGCTTGTCATATCACGGCTCCTAACATCACTGACTGTATTTCGATTCTGCATCTACCTCGTAACTCAACATTGGCTAAAGAGTTTGAGAACTTAGGAAGGATTGAAGACAACTACAACTCCACATCTCCTACACAAATTCATAAAGATGGGACAGGAGGAGGAAAAGCCGAACCAGTGAAGAGTAATGGATGGAAGGAGAAGAGTTGGTTGGGTGTTGAGCTTTTAATATATTTGCTAGTTTCTCTCATCTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

227

Amino Acids

25.31

Weight (kDa)

6.24

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	70 - 154	1.2e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	76 - 154	1.6e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	2 cut(s)	411, 426
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	561
AcvI	CACGTG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	229, 266
AfiI	CCNNNNNNNGG	2 cut(s)	269, 383
AflIII	ACRYGT	2 cut(s)	93, 254
AgsI	TTSAA	1 cut(s)	530
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	2 cut(s)	238, 646
AluI	AGCT	2 cut(s)	238, 646
Alw26I	GTCTC	3 cut(s)	76, 270, 357
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	537
BccI	CCATC	4 cut(s)	16, 170, 566, 609
BceAI	ACGGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BcoDI	GTCTC	3 cut(s)	76, 270, 357
BfaI	CTAG	5 cut(s)	86, 105, 185, 407, 662
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	288, 444
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	129, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 383
Bse1I	ACTGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	129, 282
BseGI	GGATG	2 cut(s)	11, 620
BseLI	CCNNNNNNNGG	2 cut(s)	269, 383
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	3 cut(s)	236, 288, 597
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	318
BsiWI	CGTACG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	269, 383
BsmAI	GTCTC	3 cut(s)	76, 270, 357
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	3, 202, 373
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	2 cut(s)	411, 426
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	288, 444
BspPI	GGATC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	129, 282
BssMI	GATC	3 cut(s)	3, 202, 373
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	129, 282
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	2 cut(s)	599, 620
BstACI	GRCGYC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	210, 517
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	11, 620
BstKTI	GATC	3 cut(s)	6, 205, 376
BstMAI	GTCTC	3 cut(s)	76, 270, 357
BstMBI	GATC	3 cut(s)	3, 202, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	11, 620
BtsIMutI	CAGTG	2 cut(s)	453, 606
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	228, 265
CviAII	CATG	2 cut(s)	130, 178
CviJI	RGCY	9 cut(s)	56, 238, 287, 318, 410, 443, 500, 593, 646
CviKI_1	RGCY	9 cut(s)	56, 238, 287, 318, 410, 443, 500, 593, 646
CviQI	GTAC	2 cut(s)	228, 265
DdeI	CTNAG	2 cut(s)	210, 517
DpnI	GATC	3 cut(s)	5, 204, 375
DpnII	GATC	3 cut(s)	3, 202, 373
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	599, 620
EarI	CTCTTC	2 cut(s)	599, 620
Eco130I	CCWWGG	2 cut(s)	129, 282
Eco72I	CACGTG	1 cut(s)	255
EcoT14I	CCWWGG	2 cut(s)	129, 282
ErhI	CCWWGG	2 cut(s)	129, 282
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	133, 181
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	2 cut(s)	129, 177
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	5 cut(s)	86, 105, 185, 407, 662
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	318
HgaI	GACGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	133, 181
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	39, 469
Hpy166II	GTNNAC	2 cut(s)	28, 228
Hpy188I	TCNGA	2 cut(s)	202, 362
Hpy188III	TCNNGA	4 cut(s)	105, 166, 212, 391
Hpy8I	GTNNAC	2 cut(s)	28, 228
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	516, 613
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	4 cut(s)	24, 95, 254, 267
HpyCH4V	TGCA	3 cut(s)	308, 351, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	2 cut(s)	210, 517
HpySE526I	ACGT	4 cut(s)	24, 95, 254, 267
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	133, 181
Kzo9I	GATC	3 cut(s)	3, 202, 373
LmnI	GCTCC	2 cut(s)	292, 448
LpnPI	CCDG	5 cut(s)	197, 248, 294, 564, 612
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	5 cut(s)	86, 105, 185, 407, 662
MaeII	ACGT	4 cut(s)	24, 95, 254, 267
MaeIII	GTNAC	2 cut(s)	40, 485
MalI	GATC	3 cut(s)	5, 204, 375
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	3, 202, 373
MboII	GAAGA	5 cut(s)	410, 542, 616, 637, 667
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	1 cut(s)	561
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	3 cut(s)	39, 250, 314
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	396, 650, 682
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	3, 202, 373
NlaIII	CATG	2 cut(s)	133, 181
NlaIV	GGNNCC	2 cut(s)	288, 444
NmuCI	GTSAC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	469
Pfl23II	CGTACG	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	47
PmaCI	CACGTG	1 cut(s)	255
PmlI	CACGTG	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	326
PspCI	CACGTG	1 cut(s)	255
PspLI	CGTACG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	288, 444
RsaI	GTAC	2 cut(s)	229, 266
RsaNI	GTAC	2 cut(s)	228, 265
RseI	CAYNNNNRTG	1 cut(s)	570
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	396, 650, 682
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	3, 202, 373
SchI	GAGTC	1 cut(s)	48
SetI	ASST	8 cut(s)	27, 98, 176, 240, 257, 270, 484, 648
SfaNI	GCATC	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	1 cut(s)	561
SsiI	CCGC	2 cut(s)	411, 426
SspMI	CTAG	5 cut(s)	86, 105, 185, 407, 662
StyI	CCWWGG	2 cut(s)	129, 282
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	4 cut(s)	27, 98, 257, 270
TaqI	TCGA	3 cut(s)	27, 124, 467
TasI	AATT	1 cut(s)	561
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	3 cut(s)	396, 650, 682
Tru9I	TTAA	3 cut(s)	396, 650, 682
TscAI	CASTG	2 cut(s)	460, 606
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	145, 554
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	460, 606
XapI	RAATTY	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	5 cut(s)	86, 105, 185, 407, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.