RchiOBHm_Chr5g0081561

Non-specific lipid-transfer protein-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
87532591 .. 87533859
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35581

Sequence Viewer

Length: 588 bp
ATGAGTAACTCAGAGAAGTTCAGTGTGGGGATCTCATGTATATTTGTGGTGGTGATGATGCTAGCTGGTTTTGGAAGCTCAGACATAGACCAAGACAGGGCGCAATGTGCAGACCAGCTAATAGGGCTTGCTCCATGTCTTCCTTATGTTGGTGGTGAAAAAGATGCCAAAACTCCCACAATAGACTGCTGCACTGGCCTGAAACAGGTGGATGCAAAGAGCCACAGATGCCTCTGTGTTCTGATTAAGGACCACAACGATCCTAAACTCGGGCTCAACATCAACGCTACGCTTGCTTTGATGCTCCCTGGTGCCTGCCATGTACCAGTTAACATAACTAGCTGTGTTGATCTCTTGCATTTGGATCCAAAATCGGCAGACGGTAAGATGTTCTTGGGATATGCAGAGAAGACTAAAGCTGTTAACAGTACTAGTGCTCCTATTTCCAGTGGAAACTCTACAAGCAGTGGTACAGTTTCTCAAGAAATGAGTGATGGTTGGAGCCTGGGAAAAGGATTGATGGGAATAGAGATGCTTTTTGTGATCTCAATGTGCTTTTATATTTCTCACCTTGTGTTCTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

20.73

Weight (kDa)

5.65

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 19 - 115 1.5e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 36 - 115 1.7e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AclWI GGATC 4 cut(s) 38, 254, 359, 372
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 3 cut(s) 324, 430, 472
AfiI CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 2 cut(s) 307, 504
AluBI AGCT 5 cut(s) 65, 78, 118, 342, 419
AluI AGCT 5 cut(s) 65, 78, 118, 342, 419
Alw21I GWGCWC 1 cut(s) 439
AlwI GGATC 4 cut(s) 38, 254, 359, 372
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 64, 167, 560
AsuNHI GCTAGC 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 250
BamHI GGATCC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 131, 416
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 488, 514
BciT130I CCWGG 2 cut(s) 309, 506
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 62, 339, 432
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 2 cut(s) 309, 506
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 313, 366, 503
BmrFI CCNGG 2 cut(s) 309, 506
BmsI GCATC 6 cut(s) 48, 154, 202, 218, 291, 522
BmtI GCTAGC 1 cut(s) 65
BpiI GAAGAC 2 cut(s) 131, 416
BpuEI CTTGAG 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 307, 505
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
Bse1I ACTGG 3 cut(s) 199, 326, 447
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 309, 506
BseDI CCNNGG 2 cut(s) 307, 505
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 24, 93
BseNI ACTGG 3 cut(s) 199, 326, 447
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 2 cut(s) 129, 175
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 269
BslI CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 276, 439
Bsp143I GATC 5 cut(s) 30, 259, 349, 364, 543
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 23, 92
BspLI GGNNCC 3 cut(s) 313, 366, 503
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 4 cut(s) 38, 254, 359, 372
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 110
BsrI ACTGG 3 cut(s) 199, 326, 447
BssECI CCNNGG 2 cut(s) 307, 505
BssMI GATC 5 cut(s) 30, 259, 349, 364, 543
Bst2UI CCWGG 2 cut(s) 309, 506
Bst4CI ACNGT 3 cut(s) 383, 428, 475
BstC8I GCNNGC 4 cut(s) 63, 129, 294, 316
BstDEI CTNAG 2 cut(s) 10, 79
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 5 cut(s) 33, 262, 352, 367, 546
BstMBI GATC 5 cut(s) 30, 259, 349, 364, 543
BstMWI GCNNNNNNNGC 5 cut(s) 107, 124, 195, 228, 293
BstNI CCWGG 2 cut(s) 309, 506
BstSCI CCNGG 2 cut(s) 307, 504
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 2 cut(s) 131, 416
BstX2I RGATCY 2 cut(s) 30, 364
BstYI RGATCY 2 cut(s) 30, 364
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 4 cut(s) 28, 192, 454, 472
Cac8I GCNNGC 4 cut(s) 63, 129, 294, 316
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 323, 429, 471
CviAII CATG 3 cut(s) 36, 135, 320
CviQI GTAC 3 cut(s) 323, 429, 471
DdeI CTNAG 2 cut(s) 10, 79
DpnI GATC 5 cut(s) 32, 261, 351, 366, 545
DpnII GATC 5 cut(s) 30, 259, 349, 364, 543
DraIII CACNNNGTG 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 307, 504
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 3 cut(s) 39, 138, 323
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 3 cut(s) 35, 134, 319
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 3 cut(s) 62, 339, 432
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 198
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 39, 138, 323
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 2 cut(s) 331, 424
HindII GTYRAC 2 cut(s) 331, 424
HpaI GTTAAC 2 cut(s) 331, 424
HphI GGTGA 3 cut(s) 64, 167, 560
Hpy166II GTNNAC 2 cut(s) 331, 424
Hpy188I TCNGA 3 cut(s) 13, 82, 243
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 2 cut(s) 331, 424
HpyCH4III ACNGT 3 cut(s) 383, 428, 475
HpyCH4V TGCA 5 cut(s) 110, 192, 215, 358, 404
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 124, 195, 228, 293
HpyF3I CTNAG 2 cut(s) 10, 79
Hsp92II CATG 3 cut(s) 39, 138, 323
HspAI GCGC 1 cut(s) 101
KspAI GTTAAC 2 cut(s) 331, 424
Kzo9I GATC 5 cut(s) 30, 259, 349, 364, 543
LmnI GCTCC 4 cut(s) 136, 309, 442, 501
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 6 cut(s) 48, 154, 202, 218, 291, 522
MaeI CTAG 3 cut(s) 62, 339, 432
MaeIII GTNAC 1 cut(s) 5
MalI GATC 5 cut(s) 32, 261, 351, 366, 545
MboI GATC 5 cut(s) 30, 259, 349, 364, 543
MboII GAAGA 2 cut(s) 131, 421
MflI RGATCY 2 cut(s) 30, 364
MhlI GDGCHC 2 cut(s) 276, 439
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 1 cut(s) 242
MseI TTAA 4 cut(s) 246, 330, 423, 586
MspR9I CCNGG 2 cut(s) 309, 506
MvaI CCWGG 2 cut(s) 309, 506
MwoI GCNNNNNNNGC 5 cut(s) 107, 124, 195, 228, 293
NdeII GATC 5 cut(s) 30, 259, 349, 364, 543
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 3 cut(s) 39, 138, 323
NlaIV GGNNCC 3 cut(s) 313, 366, 503
PkrI GCNGC 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 307, 504
PspGI CCWGG 2 cut(s) 307, 504
PspN4I GGNNCC 3 cut(s) 313, 366, 503
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 30, 364
RsaI GTAC 3 cut(s) 324, 430, 472
RsaNI GTAC 3 cut(s) 323, 429, 471
SaqAI TTAA 4 cut(s) 246, 330, 423, 586
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 5 cut(s) 30, 259, 349, 364, 543
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 430
ScrFI CCNGG 2 cut(s) 309, 506
SduI GDGCHC 2 cut(s) 276, 439
SetI ASST 7 cut(s) 67, 80, 120, 210, 344, 421, 573
SfaNI GCATC 6 cut(s) 48, 154, 202, 218, 291, 522
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SpeI ACTAGT 1 cut(s) 431
SspMI CTAG 3 cut(s) 62, 339, 432
StyD4I CCNGG 2 cut(s) 307, 504
TaaI ACNGT 3 cut(s) 383, 428, 475
TatI WGTACW 1 cut(s) 428
Tru1I TTAA 4 cut(s) 246, 330, 423, 586
Tru9I TTAA 4 cut(s) 246, 330, 423, 586
TscAI CASTG 4 cut(s) 28, 199, 454, 472
TseI GCWGC 1 cut(s) 189
TspRI CASTG 4 cut(s) 28, 199, 454, 472
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 203
XspI CTAG 3 cut(s) 62, 339, 432
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.