Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Forward (+)

37337982 .. 37339166

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCATTGCATATTAATAATTGCCACCATCCAACCACTTTTCTATTCAAAGTGTCTCATCCCCCATGCCAAAAGGGTAGCTGAAAAAACCATACATAAAAACCAAAAACTTGCACAAATACCATCAACATTCTCTCTAACCCCATCTAGAGCTCCAGTACTGTTCTTTCTCTGCATTATTGTTGCAATGATGATTAACTCAGAGAAGTTGAGTGTGGGCATCTCATGCATATTTGTGGTGGTGATGATGCTAGCTGGTTTTGGAAGCTCAGATATAGACCAAGATAGGGCACAATGTGCAGACCAGCTGATAGGGCTTGCTCCGTGTCTTTCTTATGTTGGGGGTGACAAAGATGCCAAAACTCCCACAATAGACTGCTGCACTGGCCTGAAACAGGTGGATGCAAAGAGCCACAAATGCCTCTGTGTTCTGATTAAGGACCACGACGATCCTAAGCTCGGCCTCACCATCAATGCCACTCTTGCTTTGAACCTCCCTGGTGCCTGCCATGTACCTGTTAACATAACTAGCTGTGTTGATCTCTTGCATTTGGATCCAAAATCGGCAGACGGTAAGATGTTCTTGGGATATGCAGAGAAGACTAAAGCTGTTAACAGTACTAGTGCCTCTATTACCAGCAGTGGGAACTCTACAACAGTTGCTCAAGATACGAGTGATGGTGGGAGCCTGGGAAAAGGATTGCTGCTGGGAAAAGGATTGCTGGGAATAGAGATGCTTTTTGTGACCCCAATGTGCTTTTATATTTCTCAACTTGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

261

Amino Acids

27.69

Weight (kDa)

7.92

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	83 - 178	5.1e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	99 - 178	2.2e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AclWI	GGATC	3 cut(s)	443, 548, 561
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	3 cut(s)	159, 513, 619
AfiI	CCNNNNNNNGG	4 cut(s)	286, 394, 458, 642
AgsI	TTSAA	2 cut(s)	48, 490
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	2 cut(s)	496, 687
AluBI	AGCT	8 cut(s)	80, 152, 254, 267, 307, 457, 531, 608
AluI	AGCT	8 cut(s)	80, 152, 254, 267, 307, 457, 531, 608
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	3 cut(s)	443, 548, 561
AoxI	GGCC	2 cut(s)	385, 460
ApeKI	GCWGC	2 cut(s)	378, 703
AseI	ATTAAT	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	3 cut(s)	253, 356, 457
AsuNHI	GCTAGC	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	365, 690
BccI	CCATC	5 cut(s)	35, 130, 151, 476, 671
BciT130I	CCWGG	2 cut(s)	498, 689
BcoDI	GTCTC	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	4 cut(s)	147, 251, 528, 621
BisI	GCNGC	2 cut(s)	379, 704
BlsI	GCNGC	2 cut(s)	380, 705
BmcAI	AGTACT	2 cut(s)	159, 619
Bme1390I	CCNGG	2 cut(s)	498, 689
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	502, 555, 686
BmrFI	CCNGG	2 cut(s)	498, 689
BmsI	GCATC	5 cut(s)	228, 237, 343, 391, 723
BmtI	GCTAGC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	605
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	496, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 394, 458, 642
Bse1I	ACTGG	2 cut(s)	155, 388
Bse3DI	GCAATG	2 cut(s)	4, 192
BseBI	CCWGG	2 cut(s)	498, 689
BseDI	CCNNGG	2 cut(s)	496, 688
BseGI	GGATG	3 cut(s)	27, 57, 406
BseLI	CCNNNNNNNGG	4 cut(s)	286, 394, 458, 642
BseMI	GCAATG	2 cut(s)	4, 192
BseMII	CTCAG	2 cut(s)	213, 282
BseNI	ACTGG	2 cut(s)	155, 388
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	365, 690
BseYI	CCCAGC	2 cut(s)	706, 721
BsgI	GTGCAG	2 cut(s)	318, 364
BshFI	GGCC	2 cut(s)	387, 462
BshNI	GGYRCC	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	154
BslI	CCNNNNNNNGG	4 cut(s)	286, 394, 458, 642
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	387, 462
Bsp1286I	GDGCHC	2 cut(s)	154, 292
Bsp143I	GATC	3 cut(s)	448, 538, 553
BspANI	GGCC	2 cut(s)	387, 462
BspCNI	CTCAG	2 cut(s)	212, 281
BspLI	GGNNCC	3 cut(s)	502, 555, 686
BspOI	GCTAGC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	443, 548, 561
BspT107I	GGYRCC	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	4, 192
BsrI	ACTGG	2 cut(s)	155, 388
BssECI	CCNNGG	2 cut(s)	496, 688
BssMI	GATC	3 cut(s)	448, 538, 553
Bst2UI	CCWGG	2 cut(s)	498, 689
Bst4CI	ACNGT	4 cut(s)	162, 572, 617, 658
BstAPI	GCANNNNNTGC	2 cut(s)	225, 296
BstC8I	GCNNGC	3 cut(s)	252, 318, 505
BstDEI	CTNAG	3 cut(s)	199, 268, 453
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	27, 57, 406
BstKTI	GATC	3 cut(s)	451, 541, 556
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	448, 538, 553
BstMWI	GCNNNNNNNGC	6 cut(s)	225, 296, 313, 384, 417, 482
BstNI	CCWGG	2 cut(s)	498, 689
BstSCI	CCNGG	2 cut(s)	496, 687
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	365, 690
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	387, 462
BtsCI	GGATG	3 cut(s)	27, 57, 406
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	2 cut(s)	381, 646
Cac8I	GCNNGC	3 cut(s)	252, 318, 505
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	158, 512, 618
CviAII	CATG	3 cut(s)	65, 225, 509
CviQI	GTAC	3 cut(s)	158, 512, 618
DdeI	CTNAG	3 cut(s)	199, 268, 453
DpnI	GATC	3 cut(s)	450, 540, 555
DpnII	GATC	3 cut(s)	448, 538, 553
DraIII	CACNNNGTG	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	496, 687
EcoT22I	ATGCAT	2 cut(s)	6, 230
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	3 cut(s)	68, 228, 512
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FatI	CATG	3 cut(s)	64, 224, 508
Fnu4HI	GCNGC	2 cut(s)	379, 704
FokI	GGATG	3 cut(s)	14, 44, 413
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	379, 704
FspBI	CTAG	4 cut(s)	147, 251, 528, 621
GluI	GCNGC	2 cut(s)	379, 704
GsaI	CCCAGC	2 cut(s)	710, 725
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	387, 462
Hin1II	CATG	3 cut(s)	68, 228, 512
HincII	GTYRAC	2 cut(s)	520, 613
HindII	GTYRAC	2 cut(s)	520, 613
HpaI	GTTAAC	2 cut(s)	520, 613
HphI	GGTGA	3 cut(s)	253, 356, 457
Hpy166II	GTNNAC	2 cut(s)	520, 613
Hpy188I	TCNGA	3 cut(s)	202, 271, 432
Hpy188III	TCNNGA	2 cut(s)	147, 665
Hpy8I	GTNNAC	2 cut(s)	520, 613
Hpy99I	CGWCG	1 cut(s)	449
HpyCH4III	ACNGT	4 cut(s)	162, 572, 617, 658
HpyF10VI	GCNNNNNNNGC	6 cut(s)	225, 296, 313, 384, 417, 482
HpyF3I	CTNAG	3 cut(s)	199, 268, 453
Hsp92II	CATG	3 cut(s)	68, 228, 512
KspAI	GTTAAC	2 cut(s)	520, 613
Kzo9I	GATC	3 cut(s)	448, 538, 553
LmnI	GCTCC	3 cut(s)	157, 325, 684
Lsp1109I	GCAGC	2 cut(s)	365, 690
LweI	GCATC	5 cut(s)	228, 237, 343, 391, 723
MaeI	CTAG	4 cut(s)	147, 251, 528, 621
MaeIII	GTNAC	2 cut(s)	344, 742
MalI	GATC	3 cut(s)	450, 540, 555
MboI	GATC	3 cut(s)	448, 538, 553
MboII	GAAGA	1 cut(s)	610
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	154, 292
MluCI	AATT	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	431, 473, 503, 637
Mph1103I	ATGCAT	2 cut(s)	6, 230
MseI	TTAA	5 cut(s)	14, 195, 435, 519, 612
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	498, 689
MvaI	CCWGG	2 cut(s)	498, 689
MwoI	GCNNNNNNNGC	6 cut(s)	225, 296, 313, 384, 417, 482
NdeII	GATC	3 cut(s)	448, 538, 553
NheI	GCTAGC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	68, 228, 512
NlaIV	GGNNCC	3 cut(s)	502, 555, 686
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	344, 742
NsiI	ATGCAT	2 cut(s)	6, 230
PkrI	GCNGC	2 cut(s)	380, 705
PshBI	ATTAAT	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	496, 687
PspFI	CCCAGC	2 cut(s)	706, 721
PspGI	CCWGG	2 cut(s)	496, 687
PspN4I	GGNNCC	3 cut(s)	502, 555, 686
PspPI	GGNCC	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	3 cut(s)	159, 513, 619
RsaNI	GTAC	3 cut(s)	158, 512, 618
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	5 cut(s)	14, 195, 435, 519, 612
SatI	GCNGC	2 cut(s)	379, 704
Sau3AI	GATC	3 cut(s)	448, 538, 553
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	2 cut(s)	159, 619
ScrFI	CCNGG	2 cut(s)	498, 689
SduI	GDGCHC	2 cut(s)	154, 292
SfaNI	GCATC	5 cut(s)	228, 237, 343, 391, 723
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	1 cut(s)	18
SspMI	CTAG	4 cut(s)	147, 251, 528, 621
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	496, 687
TaaI	ACNGT	4 cut(s)	162, 572, 617, 658
TasI	AATT	1 cut(s)	18
TatI	WGTACW	2 cut(s)	157, 617
Tru1I	TTAA	5 cut(s)	14, 195, 435, 519, 612
Tru9I	TTAA	5 cut(s)	14, 195, 435, 519, 612
TscAI	CASTG	2 cut(s)	388, 646
TseFI	GTSAC	2 cut(s)	344, 742
TseI	GCWGC	2 cut(s)	378, 703
Tsp45I	GTSAC	2 cut(s)	344, 742
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	388, 646
VpaK11BI	GGWCC	1 cut(s)	439
VspI	ATTAAT	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	392
XbaI	TCTAGA	1 cut(s)	146
XspI	CTAG	4 cut(s)	147, 251, 528, 621
ZrmI	AGTACT	2 cut(s)	159, 619
Zsp2I	ATGCAT	2 cut(s)	6, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.