Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Reverse (-)

641712 .. 642461

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGTAACTCAAAGAATGTGAGTGTGCAGGCACTCTCATGCACCTTGTTGTTGATATTCCTAGTTGGTTTTGGCAGCTGCAACATAGACCAAGATAAGGCAGAATGTGCAGACCAACTAGTAGGGCTTGCCCCCTGCCTTCCGTACGTCGGCGGTGATGCCAAAAGTCCAACCATAGACTGTTGCAGTGGGATTAAAGTAGTGGTGCAGAAGAGCAAGAAATGCCTCTGTGTCCTAATTAAGGACCGCGATGATCCAAAACTCGGCCTCAAGATCAATGCCACTCTTGCCTTAAGCCTTCCCAGTTCCTGCCATGTACCTATTAACATATCAAGATGTGTTGATCTCTTGAATTTGCCATCAAACTCTCCAGACGCGAAGATGTTCCGGGATTATGAAAACAAGACTGAAGCTAGAAGCAGCACTACTGCCCCTATATCCAGCGGGAACTCTACAAGCAGTGGTGCAGTAGCTCAAGTGATGGTGGGAGCCTGGGAAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

169

Amino Acids

17.72

Weight (kDa)

8.02

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	249, 377
AciI	CCGC	3 cut(s)	153, 247, 444
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	146, 318
AfiI	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
AflII	CTTAAG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	352
AhlI	ACTAGT	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	491
AluBI	AGCT	4 cut(s)	78, 413, 473, 503
AluI	AGCT	4 cut(s)	78, 413, 473, 503
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	75, 78, 420
ApoI	RAATTY	1 cut(s)	352
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BbvI	GCAGC	3 cut(s)	65, 87, 432
BccI	CCATC	2 cut(s)	367, 475
BciT130I	CCWGG	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	3 cut(s)	62, 119, 414
BfrI	CTTAAG	1 cut(s)	292
BisI	GCNGC	3 cut(s)	76, 79, 421
BlsI	GCNGC	3 cut(s)	77, 80, 422
Bme1390I	CCNGG	2 cut(s)	389, 493
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	389, 493
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	254, 459
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	492
BseLI	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	65, 87, 432
BsgI	GTGCAG	4 cut(s)	47, 129, 227, 486
Bsh1236I	CGCG	2 cut(s)	249, 377
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	388
BsiWI	CGTACG	1 cut(s)	144
BslI	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	253, 273, 343
BspACI	CCGC	3 cut(s)	153, 247, 444
BspANI	GGCC	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	249, 377
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	253, 273, 343
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	292
BstAPI	GCANNNNNTGC	2 cut(s)	107, 222
BstC8I	GCNNGC	2 cut(s)	30, 129
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstFNI	CGCG	2 cut(s)	249, 377
BstKTI	GATC	3 cut(s)	256, 276, 346
BstMBI	GATC	3 cut(s)	253, 273, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 222, 287
BstNI	CCWGG	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	387, 491
BstUI	CGCG	2 cut(s)	249, 377
BstV1I	GCAGC	3 cut(s)	65, 87, 432
BsuRI	GGCC	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	264
BtsI	GCAGTG	2 cut(s)	193, 466
BtsIMutI	CAGTG	2 cut(s)	193, 466
Cac8I	GCNNGC	2 cut(s)	30, 129
CaiI	CAGNNNCTG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	145, 317
CviAII	CATG	2 cut(s)	39, 314
CviJI	RGCY	8 cut(s)	78, 127, 267, 297, 413, 473, 491, 503
CviKI_1	RGCY	8 cut(s)	78, 127, 267, 297, 413, 473, 491, 503
CviQI	GTAC	2 cut(s)	145, 317
DpnI	GATC	3 cut(s)	255, 275, 345
DpnII	GATC	3 cut(s)	253, 273, 343
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	491
FaeI	CATG	2 cut(s)	42, 317
FaiI	YATR	7 cut(s)	40, 86, 176, 315, 329, 396, 437
FatI	CATG	2 cut(s)	38, 313
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	3 cut(s)	76, 79, 421
Fsp4HI	GCNGC	3 cut(s)	76, 79, 421
FspBI	CTAG	3 cut(s)	62, 119, 414
GluI	GCNGC	3 cut(s)	76, 79, 421
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	2 cut(s)	42, 317
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	167
Hpy188III	TCNNGA	4 cut(s)	271, 333, 349, 371
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	149, 308
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	7 cut(s)	28, 42, 81, 110, 186, 208, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 222, 287
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	42, 317
Kzo9I	GATC	3 cut(s)	253, 273, 343
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	8 cut(s)	14, 148, 316, 322, 384, 401, 454, 478
Lsp1109I	GCAGC	3 cut(s)	65, 87, 432
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	62, 119, 414
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	255, 275, 345
MboI	GATC	3 cut(s)	253, 273, 343
MboII	GAAGA	2 cut(s)	223, 391
MluCI	AATT	2 cut(s)	237, 352
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	2 cut(s)	236, 278
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	4 cut(s)	195, 240, 293, 324
MslI	CAYNNNNRTG	1 cut(s)	37
MspA1I	CMGCKG	2 cut(s)	78, 444
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	389, 493
MvaI	CCWGG	1 cut(s)	493
MvnI	CGCG	2 cut(s)	249, 377
MwoI	GCNNNNNNNGC	3 cut(s)	107, 222, 287
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	3 cut(s)	253, 273, 343
NlaIII	CATG	2 cut(s)	42, 317
NlaIV	GGNNCC	1 cut(s)	490
NmeAIII	GCCGAG	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	383
Pfl23II	CGTACG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	77, 80, 422
Psp6I	CCWGG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	491
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	2 cut(s)	146, 318
RsaNI	GTAC	2 cut(s)	145, 317
RseI	CAYNNNNRTG	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	4 cut(s)	195, 240, 293, 324
SatI	GCNGC	3 cut(s)	76, 79, 421
Sau3AI	GATC	3 cut(s)	253, 273, 343
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	389, 493
SetI	ASST	7 cut(s)	47, 80, 150, 322, 415, 475, 505
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	3 cut(s)	269, 292, 474
SmoI	CTYRAG	3 cut(s)	269, 292, 474
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	2 cut(s)	237, 352
SsiI	CCGC	3 cut(s)	153, 247, 444
SspMI	CTAG	3 cut(s)	62, 119, 414
StyD4I	CCNGG	2 cut(s)	387, 491
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	150
TasI	AATT	2 cut(s)	237, 352
Tru1I	TTAA	4 cut(s)	195, 240, 293, 324
Tru9I	TTAA	4 cut(s)	195, 240, 293, 324
TscAI	CASTG	2 cut(s)	193, 466
TseI	GCWGC	3 cut(s)	75, 78, 420
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	193, 466
Vha464I	CTTAAG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	3 cut(s)	62, 119, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.