Rmu_co8404245.1_g000001

Non-specific lipid-transfer protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8404245.1
OG0010349
Physical Location & Seq
Reverse (-)
1 .. 1147
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8404245.1_g000001.1.cds

Sequence Viewer

Length: 496 bp
atgagcaactcagagaagttcagtgtggggatctcatgtatatttgtggtggtgatgatgctagctggttttggaagctcagacatagaccaagacagggcacaatgtgcagaccagctaatagggcttgctccatgtcttccttatgttggtggtgaaaaaggtgccaaaactcccacaatagactgctgcactggcctgaaacaggtggatgcaaagagccacagatgcctctgtgttctgattaaggaccacaacgatcctaaactcgggctcaacatcaacgctacgcttgctttgatgctccctggtgcctgccatgtaccagttaacataactagctgtgttgatctcttgcatttggatccaaaatcggcagacggtaagatgttcttgggatatgcagagaagactaaagctgttaacagtactagtgctcctatttccagtggaaactctacaagcagtggtacagtttctcaaggaatgagtgatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

165

Amino Acids

17.18

Weight (kDa)

6.03

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 164, 311
AclWI GGATC 4 cut(s) 38, 254, 359, 372
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 3 cut(s) 324, 430, 472
AfiI CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 5 cut(s) 65, 78, 118, 342, 419
AluI AGCT 5 cut(s) 65, 78, 118, 342, 419
Alw21I GWGCWC 1 cut(s) 439
AlwI GGATC 4 cut(s) 38, 254, 359, 372
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 64, 167
AsuNHI GCTAGC 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 103
BamHI GGATCC 1 cut(s) 364
BanI GGYRCC 2 cut(s) 164, 311
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 131, 416
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 309
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 62, 339, 432
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 166, 313, 366
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 4 cut(s) 48, 202, 218, 291
BmtI GCTAGC 1 cut(s) 65
BpiI GAAGAC 2 cut(s) 131, 416
BpuEI CTTGAG 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
Bse1I ACTGG 3 cut(s) 199, 326, 447
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
BseMII CTCAG 2 cut(s) 24, 93
BseNI ACTGG 3 cut(s) 199, 326, 447
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 2 cut(s) 129, 175
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 2 cut(s) 164, 311
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 269
BslI CCNNNNNNNGG 4 cut(s) 97, 149, 205, 269
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 103, 276, 439
Bsp143I GATC 4 cut(s) 30, 259, 349, 364
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 23, 92
BspLI GGNNCC 3 cut(s) 166, 313, 366
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 4 cut(s) 38, 254, 359, 372
BspT107I GGYRCC 2 cut(s) 164, 311
BsrI ACTGG 3 cut(s) 199, 326, 447
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 4 cut(s) 30, 259, 349, 364
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 383, 428, 475
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 63, 129, 294, 316
BstDEI CTNAG 2 cut(s) 10, 79
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 4 cut(s) 33, 262, 352, 367
BstMBI GATC 4 cut(s) 30, 259, 349, 364
BstMWI GCNNNNNNNGC 5 cut(s) 107, 124, 195, 228, 293
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 2 cut(s) 131, 416
BstX2I RGATCY 2 cut(s) 30, 364
BstYI RGATCY 2 cut(s) 30, 364
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 4 cut(s) 28, 192, 454, 472
Cac8I GCNNGC 4 cut(s) 63, 129, 294, 316
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 323, 429, 471
CviAII CATG 3 cut(s) 36, 135, 320
CviJI RGCY 9 cut(s) 65, 78, 118, 127, 198, 222, 274, 342, 419
CviKI_1 RGCY 9 cut(s) 65, 78, 118, 127, 198, 222, 274, 342, 419
CviQI GTAC 3 cut(s) 323, 429, 471
DdeI CTNAG 2 cut(s) 10, 79
DpnI GATC 4 cut(s) 32, 261, 351, 366
DpnII GATC 4 cut(s) 30, 259, 349, 364
DraIII CACNNNGTG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 3 cut(s) 39, 138, 323
FaiI YATR 8 cut(s) 37, 41, 86, 136, 147, 321, 335, 402
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 3 cut(s) 35, 134, 319
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 3 cut(s) 62, 339, 432
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 198
Hin1II CATG 3 cut(s) 39, 138, 323
HincII GTYRAC 2 cut(s) 331, 424
HindII GTYRAC 2 cut(s) 331, 424
HpaI GTTAAC 2 cut(s) 331, 424
HphI GGTGA 2 cut(s) 64, 167
Hpy166II GTNNAC 2 cut(s) 331, 424
Hpy188I TCNGA 3 cut(s) 13, 82, 243
Hpy8I GTNNAC 2 cut(s) 331, 424
HpyCH4III ACNGT 3 cut(s) 383, 428, 475
HpyCH4V TGCA 5 cut(s) 110, 192, 215, 358, 404
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 124, 195, 228, 293
HpyF3I CTNAG 2 cut(s) 10, 79
Hsp92II CATG 3 cut(s) 39, 138, 323
KspAI GTTAAC 2 cut(s) 331, 424
Kzo9I GATC 4 cut(s) 30, 259, 349, 364
LmnI GCTCC 3 cut(s) 136, 309, 442
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 4 cut(s) 48, 202, 218, 291
MaeI CTAG 3 cut(s) 62, 339, 432
MalI GATC 4 cut(s) 32, 261, 351, 366
MboI GATC 4 cut(s) 30, 259, 349, 364
MboII GAAGA 2 cut(s) 131, 421
MflI RGATCY 2 cut(s) 30, 364
MhlI GDGCHC 3 cut(s) 103, 276, 439
MnlI CCTC 1 cut(s) 242
MseI TTAA 3 cut(s) 246, 330, 423
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 5 cut(s) 107, 124, 195, 228, 293
NdeII GATC 4 cut(s) 30, 259, 349, 364
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 3 cut(s) 39, 138, 323
NlaIV GGNNCC 3 cut(s) 166, 313, 366
PkrI GCNGC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 166, 313, 366
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 30, 364
RsaI GTAC 3 cut(s) 324, 430, 472
RsaNI GTAC 3 cut(s) 323, 429, 471
SaqAI TTAA 3 cut(s) 246, 330, 423
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 4 cut(s) 30, 259, 349, 364
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 3 cut(s) 103, 276, 439
SetI ASST 7 cut(s) 67, 80, 120, 166, 210, 344, 421
SfaNI GCATC 4 cut(s) 48, 202, 218, 291
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SpeI ACTAGT 1 cut(s) 431
SspMI CTAG 3 cut(s) 62, 339, 432
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 383, 428, 475
TatI WGTACW 1 cut(s) 428
Tru1I TTAA 3 cut(s) 246, 330, 423
Tru9I TTAA 3 cut(s) 246, 330, 423
TscAI CASTG 4 cut(s) 28, 199, 454, 472
TseI GCWGC 1 cut(s) 189
TspRI CASTG 4 cut(s) 28, 199, 454, 472
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 203
XspI CTAG 3 cut(s) 62, 339, 432
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.