Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Forward (+)

81596691 .. 81600359

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG576300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGCAACTCAGAGAAGTTCAGTGTGGGGATCTCATGTATATTTGTGGTGGTGATGATGCTAGCTGGTTTTGGAAGCTCAGACATAGACCAAGACAGGGCACAATGTGCAGACCAGCTAATAGGGCTTGCTCCATGTCTTCCTTATGTTGGTGGTGAAAAAGGTGCCAAAACTCCCACAATAGACTGCTGCACTGGCCTGAAACAGGTGGATGCAAAGAGCCACAGATGCCTCTGTGTTCTGATTAAGGACCACAACGATCCTAAACTCGGGCTCAACATCAACGCTACGCTTGCTTTGATGCTCCCTGGTGCCTGCCATGTACCAGTTAACATAACTAGCTGTGTTGATCTCTTGCATTTGGATCCAAAATCGGCAGACGGTAAGATGTTCTTGGGATATGCAGAGAAGACTAAAGCTGTTAACAGTACTAGTGCTCCTATTTCCAGTGGAAACTCTACAAGCAGTGGTACAGTTTCTCAAGGAATGAGTGATGGTTGGAGCCTGGGAAAAGGATTGATGGGAATAGAGATGCTTTTTGTGACCTCAATGGTCGATTTGCCGCCGTCCGATAGTATTTACTTCACGGTTGGGATCATCAACAAGAAGCTCGATGTCGATCAGTTCCAGAGCGTTCATTCTTGCCGCGACGGGCTTTCGGGTTCGGGTTCGGGTTCGGGTTCTTGCCTCGGGTCGTTGAAACGGGTCGTTCAGCTTCCATCTCCACTGGAAGAAGAGATAAAGATGCTACTTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

253

Amino Acids

26.58

Weight (kDa)

5.52

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	20 - 115	6.2e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	36 - 115	1.7e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 311
AccII	CGCG	1 cut(s)	648
AciI	CCGC	2 cut(s)	563, 646
AclWI	GGATC	5 cut(s)	38, 254, 359, 372, 602
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	324, 430, 472
AfiI	CCNNNNNNNGG	4 cut(s)	97, 149, 205, 269
AgsI	TTSAA	1 cut(s)	700
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	307, 504
AluBI	AGCT	7 cut(s)	65, 78, 118, 342, 419, 610, 715
AluI	AGCT	7 cut(s)	65, 78, 118, 342, 419, 610, 715
Alw21I	GWGCWC	1 cut(s)	439
AlwI	GGATC	5 cut(s)	38, 254, 359, 372, 602
Ama87I	CYCGRG	2 cut(s)	269, 689
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	64, 167
AsuNHI	GCTAGC	1 cut(s)	61
AvaI	CYCGRG	2 cut(s)	269, 689
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	2 cut(s)	164, 311
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	131, 416
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	488, 514, 727
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	2 cut(s)	309, 506
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	3 cut(s)	62, 339, 432
BisI	GCNGC	3 cut(s)	190, 563, 646
BlsI	GCNGC	3 cut(s)	191, 564, 647
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	309, 506
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	2 cut(s)	269, 689
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	4 cut(s)	166, 313, 366, 503
BmrFI	CCNGG	2 cut(s)	309, 506
BmsI	GCATC	6 cut(s)	48, 202, 218, 291, 522, 735
BmtI	GCTAGC	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	131, 416
BpuEI	CTTGAG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	307, 505, 688
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 149, 205, 269
Bse1I	ACTGG	4 cut(s)	199, 326, 447, 732
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	309, 506
BseDI	CCNNGG	3 cut(s)	307, 505, 688
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	4 cut(s)	97, 149, 205, 269
BseMII	CTCAG	3 cut(s)	24, 93, 747
BseNI	ACTGG	4 cut(s)	199, 326, 447, 732
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	176
BsgI	GTGCAG	2 cut(s)	129, 175
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	198
BshNI	GGYRCC	2 cut(s)	164, 311
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	269, 689
BslI	CCNNNNNNNGG	4 cut(s)	97, 149, 205, 269
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	269, 689
Bsp1286I	GDGCHC	3 cut(s)	103, 276, 439
Bsp143I	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
BspACI	CCGC	2 cut(s)	563, 646
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	3 cut(s)	23, 92, 748
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	166, 313, 366, 503
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	5 cut(s)	38, 254, 359, 372, 602
BspT107I	GGYRCC	2 cut(s)	164, 311
BsrI	ACTGG	4 cut(s)	199, 326, 447, 732
BssECI	CCNNGG	3 cut(s)	307, 505, 688
BssMI	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
Bst2UI	CCWGG	2 cut(s)	309, 506
Bst4CI	ACNGT	4 cut(s)	383, 428, 475, 589
Bst6I	CTCTTC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	4 cut(s)	63, 129, 294, 316
BstDEI	CTNAG	3 cut(s)	10, 79, 756
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	6 cut(s)	33, 262, 352, 367, 597, 622
BstMBI	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 124, 195, 228, 293
BstNI	CCWGG	2 cut(s)	309, 506
BstSCI	CCNGG	2 cut(s)	307, 504
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	131, 416
BstX2I	RGATCY	2 cut(s)	30, 364
BstYI	RGATCY	2 cut(s)	30, 364
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	5 cut(s)	28, 192, 454, 472, 725
Cac8I	GCNNGC	4 cut(s)	63, 129, 294, 316
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	323, 429, 471
CviAII	CATG	3 cut(s)	36, 135, 320
CviQI	GTAC	3 cut(s)	323, 429, 471
DdeI	CTNAG	3 cut(s)	10, 79, 756
DpnI	GATC	6 cut(s)	32, 261, 351, 366, 596, 621
DpnII	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
DraIII	CACNNNGTG	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	250
Eco88I	CYCGRG	2 cut(s)	269, 689
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	307, 504
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	3 cut(s)	39, 138, 323
FaiI	YATR	8 cut(s)	37, 41, 86, 136, 147, 321, 335, 402
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	3 cut(s)	35, 134, 319
Fnu4HI	GCNGC	3 cut(s)	190, 563, 646
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	190, 563, 646
FspBI	CTAG	3 cut(s)	62, 339, 432
GluI	GCNGC	3 cut(s)	190, 563, 646
HaeIII	GGCC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	39, 138, 323
HincII	GTYRAC	2 cut(s)	331, 424
HindII	GTYRAC	2 cut(s)	331, 424
HpaI	GTTAAC	2 cut(s)	331, 424
HphI	GGTGA	2 cut(s)	64, 167
Hpy166II	GTNNAC	2 cut(s)	331, 424
Hpy188I	TCNGA	4 cut(s)	13, 82, 243, 571
Hpy188III	TCNNGA	1 cut(s)	628
Hpy8I	GTNNAC	2 cut(s)	331, 424
Hpy99I	CGWCG	1 cut(s)	653
HpyCH4III	ACNGT	4 cut(s)	383, 428, 475, 589
HpyCH4V	TGCA	5 cut(s)	110, 192, 215, 358, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 124, 195, 228, 293
HpyF3I	CTNAG	3 cut(s)	10, 79, 756
Hsp92II	CATG	3 cut(s)	39, 138, 323
KspAI	GTTAAC	2 cut(s)	331, 424
Kzo9I	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
LmnI	GCTCC	4 cut(s)	136, 309, 442, 501
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	6 cut(s)	48, 202, 218, 291, 522, 735
MaeI	CTAG	3 cut(s)	62, 339, 432
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	6 cut(s)	32, 261, 351, 366, 596, 621
MboI	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
MboII	GAAGA	4 cut(s)	131, 421, 743, 746
MflI	RGATCY	2 cut(s)	30, 364
MhlI	GDGCHC	3 cut(s)	103, 276, 439
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	3 cut(s)	242, 556, 698
MseI	TTAA	3 cut(s)	246, 330, 423
MspR9I	CCNGG	2 cut(s)	309, 506
MvaI	CCWGG	2 cut(s)	309, 506
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	107, 124, 195, 228, 293
NdeII	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	39, 138, 323
NlaIV	GGNNCC	4 cut(s)	166, 313, 366, 503
NmuCI	GTSAC	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	191, 564, 647
Psp6I	CCWGG	2 cut(s)	307, 504
PspGI	CCWGG	2 cut(s)	307, 504
PspN4I	GGNNCC	4 cut(s)	166, 313, 366, 503
PspPI	GGNCC	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	30, 364
RsaI	GTAC	3 cut(s)	324, 430, 472
RsaNI	GTAC	3 cut(s)	323, 429, 471
SaqAI	TTAA	3 cut(s)	246, 330, 423
SatI	GCNGC	3 cut(s)	190, 563, 646
Sau3AI	GATC	6 cut(s)	30, 259, 349, 364, 594, 619
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	309, 506
SduI	GDGCHC	3 cut(s)	103, 276, 439
SfaNI	GCATC	6 cut(s)	48, 202, 218, 291, 522, 735
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
SpeI	ACTAGT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	563, 646
SspMI	CTAG	3 cut(s)	62, 339, 432
StyD4I	CCNGG	2 cut(s)	307, 504
TaaI	ACNGT	4 cut(s)	383, 428, 475, 589
TaqI	TCGA	3 cut(s)	555, 612, 618
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	2 cut(s)	565, 648
Tru1I	TTAA	3 cut(s)	246, 330, 423
Tru9I	TTAA	3 cut(s)	246, 330, 423
TscAI	CASTG	5 cut(s)	28, 199, 454, 472, 732
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	1 cut(s)	626
TspRI	CASTG	5 cut(s)	28, 199, 454, 472, 732
VpaK11BI	GGWCC	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	203
XspI	CTAG	3 cut(s)	62, 339, 432
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.