Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Reverse (-)

828475 .. 829885

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1011100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAACTATACCAAGATGCTTGCACAATTATTGCCACTCCACCACCCAACTACTTTTCAAATGGCATAAAAACCAAAAGGGCAGCCAAGAAAAAGCAGAAAAACCACACACACACACACACAAACCCATTTCTTCTCTCTCTCGCAGCCCTCATCTCTCCTTTCTTCTGCACTACAATGAGTAACTCAAAGGATGTGAGTGTGCAGGCACTCACATGCACTTTGGTGTTGATATTTCTAGTTGGTTTTGGCAGCTGCAACATAGACCAGGATAGGGCAGAATGTACAGACCAACTAGTAGGGCTTGCCCCGTGTCTTCCGTACGTCGGCGGTGATGCCAAAACTCCAACCTTAGATTGTTGCAGTGGAATTAAAGAAGTGGTGCAGAAGAGCAAGAAATGCCTCTGTATCCTACTTAAGGACCGCGACGATCCGAAACTCGGCCTTAAGATCAATTCCACTCTTGCTTTGAACCTTCCTAGTTCCTGTCATGTACCTGTCAACATATCAACATGTATTGATCTCTTGAATTTGCCATCAAACTCTTCGGACGCGAAGATGTTCCGGGATTTTGAAAACAACACTGAAGCTAGAAGCAACACTACTGCCCCTACATCCAGCGTGAATTCTACAAGCAGTGGTACAGTTGCTCAAGCAAAGAGTGATGGTGGGAGCCTGGAAAATAGATTGATGGGAATAGAGATGCTATTTGGGACTTTTCTGGTGTTTTATATTTCACACTTAGTGTTTTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

253

Amino Acids

27.29

Weight (kDa)

8.41

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	90 - 172	4.2e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	95 - 169	4.9e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	426, 554
AciI	CCGC	2 cut(s)	330, 424
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	529, 625
AcuI	CTGAAG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	745
AfaI	GTAC	4 cut(s)	286, 323, 495, 643
AfiI	CCNNNNNNNGG	4 cut(s)	274, 326, 418, 440
AflII	CTTAAG	2 cut(s)	416, 446
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	60, 472, 529, 575
AhlI	ACTAGT	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	267, 675
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	255, 590
AluI	AGCT	2 cut(s)	255, 590
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	4 cut(s)	83, 146, 252, 255
ApoI	RAATTY	2 cut(s)	529, 625
Asp700I	GAANNNNTTC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	586, 618
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	95, 158, 242, 264
BccI	CCATC	3 cut(s)	544, 659, 685
BciT130I	CCWGG	2 cut(s)	269, 677
BciVI	GTATCC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	566
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	4 cut(s)	239, 296, 480, 591
BfrI	CTTAAG	2 cut(s)	416, 446
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	4 cut(s)	84, 147, 253, 256
BlsI	GCNGC	4 cut(s)	85, 148, 254, 257
Bme1390I	CCNGG	3 cut(s)	269, 566, 677
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	674
BmrFI	CCNGG	3 cut(s)	269, 566, 677
BmsI	GCATC	3 cut(s)	7, 325, 693
BpiI	GAAGAC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 326, 418, 440
BseBI	CCWGG	2 cut(s)	269, 677
BseGI	GGATG	2 cut(s)	199, 614
BseLI	CCNNNNNNNGG	4 cut(s)	274, 326, 418, 440
BseXI	GCAGC	4 cut(s)	95, 158, 242, 264
BsgI	GTGCAG	3 cut(s)	154, 224, 404
Bsh1236I	CGCG	2 cut(s)	426, 554
BshFI	GGCC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	565
BsiWI	CGTACG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	4 cut(s)	274, 326, 418, 440
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	430, 450, 520
BspACI	CCGC	2 cut(s)	330, 424
BspANI	GGCC	1 cut(s)	444
BspFNI	CGCG	2 cut(s)	426, 554
BspLI	GGNNCC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	383
BspTI	CTTAAG	2 cut(s)	416, 446
BsrGI	TGTACA	1 cut(s)	284
BssMI	GATC	3 cut(s)	430, 450, 520
Bst2UI	CCWGG	2 cut(s)	269, 677
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	2 cut(s)	383, 550
BstAFI	CTTAAG	2 cut(s)	416, 446
BstAPI	GCANNNNNTGC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	22, 207, 306
BstDEI	CTNAG	2 cut(s)	352, 742
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	199, 614
BstFNI	CGCG	2 cut(s)	426, 554
BstKTI	GATC	3 cut(s)	433, 453, 523
BstMBI	GATC	3 cut(s)	430, 450, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	269, 677
BstNSI	RCATGY	2 cut(s)	219, 516
BstSCI	CCNGG	3 cut(s)	267, 564, 675
BstUI	CGCG	2 cut(s)	426, 554
BstV1I	GCAGC	4 cut(s)	95, 158, 242, 264
BstV2I	GAAGAC	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	199, 614
BtsI	GCAGTG	2 cut(s)	370, 643
BtsIMutI	CAGTG	3 cut(s)	370, 582, 643
Cac8I	GCNNGC	3 cut(s)	22, 207, 306
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	4 cut(s)	285, 322, 494, 642
CviAII	CATG	3 cut(s)	216, 491, 513
CviJI	RGCY	7 cut(s)	86, 149, 255, 304, 444, 590, 675
CviKI_1	RGCY	7 cut(s)	86, 149, 255, 304, 444, 590, 675
CviQI	GTAC	4 cut(s)	285, 322, 494, 642
DdeI	CTNAG	2 cut(s)	352, 742
DpnI	GATC	3 cut(s)	432, 452, 522
DpnII	GATC	3 cut(s)	430, 450, 520
DraIII	CACNNNGTG	1 cut(s)	745
Eam1104I	CTCTTC	2 cut(s)	383, 550
EarI	CTCTTC	2 cut(s)	383, 550
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	267, 675
FaeI	CATG	3 cut(s)	219, 494, 516
FaiI	YATR	9 cut(s)	10, 68, 217, 263, 492, 506, 514, 732, 753
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	3 cut(s)	215, 490, 512
Fnu4HI	GCNGC	4 cut(s)	84, 147, 253, 256
FokI	GGATG	2 cut(s)	206, 601
Fsp4HI	GCNGC	4 cut(s)	84, 147, 253, 256
FspBI	CTAG	4 cut(s)	239, 296, 480, 591
GluI	GCNGC	4 cut(s)	84, 147, 253, 256
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	565
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	3 cut(s)	219, 494, 516
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	435, 550
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	2 cut(s)	329, 431
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	7 cut(s)	24, 171, 205, 219, 258, 363, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	2 cut(s)	352, 742
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	219, 494, 516
Kzo9I	GATC	3 cut(s)	430, 450, 520
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	672
Lsp1109I	GCAGC	4 cut(s)	95, 158, 242, 264
LweI	GCATC	3 cut(s)	7, 325, 693
MaeI	CTAG	4 cut(s)	239, 296, 480, 591
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	432, 452, 522
MboI	GATC	3 cut(s)	430, 450, 520
MboII	GAAGA	6 cut(s)	125, 157, 308, 400, 537, 568
MluCI	AATT	5 cut(s)	27, 369, 454, 529, 625
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	2 cut(s)	161, 413
MroXI	GAANNNNTTC	1 cut(s)	560
MseI	TTAA	3 cut(s)	372, 417, 447
MslI	CAYNNNNRTG	3 cut(s)	176, 214, 224
MspA1I	CMGCKG	1 cut(s)	255
MspCI	CTTAAG	2 cut(s)	416, 446
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	3 cut(s)	269, 566, 677
MvaI	CCWGG	2 cut(s)	269, 677
MvnI	CGCG	2 cut(s)	426, 554
MwoI	GCNNNNNNNGC	1 cut(s)	399
NciI	CCSGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	430, 450, 520
NlaIII	CATG	3 cut(s)	219, 494, 516
NlaIV	GGNNCC	1 cut(s)	674
NmeAIII	GCCGAG	1 cut(s)	420
NspI	RCATGY	2 cut(s)	219, 516
OliI	CACNNNNGTG	1 cut(s)	224
PciI	ACATGT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	560
Pfl23II	CGTACG	1 cut(s)	321
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	85, 148, 254, 257
PscI	ACATGT	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	267, 675
PspGI	CCWGG	2 cut(s)	267, 675
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	255
RsaI	GTAC	4 cut(s)	286, 323, 495, 643
RsaNI	GTAC	4 cut(s)	285, 322, 494, 642
RseI	CAYNNNNRTG	3 cut(s)	176, 214, 224
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	372, 417, 447
SatI	GCNGC	4 cut(s)	84, 147, 253, 256
Sau3AI	GATC	3 cut(s)	430, 450, 520
Sau96I	GGNCC	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	269, 566, 677
SetI	ASST	6 cut(s)	257, 327, 353, 477, 499, 592
SfaNI	GCATC	3 cut(s)	7, 325, 693
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	3 cut(s)	176, 214, 224
SmlI	CTYRAG	3 cut(s)	416, 446, 651
SmoI	CTYRAG	3 cut(s)	416, 446, 651
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	5 cut(s)	27, 369, 454, 529, 625
SsiI	CCGC	2 cut(s)	330, 424
SspMI	CTAG	4 cut(s)	239, 296, 480, 591
StyD4I	CCNGG	3 cut(s)	267, 564, 675
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	1 cut(s)	327
TasI	AATT	5 cut(s)	27, 369, 454, 529, 625
TatI	WGTACW	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	372, 417, 447
Tru9I	TTAA	3 cut(s)	372, 417, 447
TscAI	CASTG	3 cut(s)	370, 589, 643
TseI	GCWGC	4 cut(s)	83, 146, 252, 255
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	370, 589, 643
Vha464I	CTTAAG	2 cut(s)	416, 446
VpaK11BI	GGWCC	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	2 cut(s)	529, 625
XceI	RCATGY	2 cut(s)	219, 516
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	4 cut(s)	239, 296, 480, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.