Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Reverse (-)

622902 .. 624101

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1007900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAATAACTCAAAGAATGTGAGTGTGCAGGTACTCTCATGCACCTTGGTGTTGATATTTCTAGTTGGTTTTGGCAGCTGCAACATAGACCAAGATAAGGCAGAATGTGCAGACCAACTAGTAGGGCTTGCCCCCTGCCTTCCGTACGTCGGCGGCGATGCCAAAAGTCCAACCATAGACTGTTGCAGTGGGATTAAAGTAGTGGTGCAGAAGAGCAAGAAATGCCTGTGTGTCCTAATTAAGGACCGCGATGATCCAAAACTCGGCCTCAAGATCAATGCCACTCTTGCCTTAAACCTTCCCAGTTCCTGCCATGTACCTATCAACATATCAAGATGCGTTGATCTCTTGAATTTGCCATCAAACTCTCCGGATGCGAAGATGTTCCTGGATTATGAAAACAAGACTGAAGCTAGAAGCAGCACTACTGCCCCTATATCCAGCGGGAATTCTACAAGCAGTGGTACAGTAGCTCAAGAAAAGAGTGATGGTGGGAGCCTGGGAAAGAGCTTGATGGGAATAGAGATGCTCTTTGGGAGTTTACTGTTGTTTTATATTCCACACCTGGTGCTTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

194

Amino Acids

20.41

Weight (kDa)

6.69

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	31 - 113	8.4e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	36 - 113	2.6e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	3 cut(s)	153, 247, 444
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	352, 448
AcuI	CTGAAG	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	4 cut(s)	33, 146, 318, 466
AfiI	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
AgsI	TTSAA	1 cut(s)	352
AhlI	ACTAGT	1 cut(s)	118
AjnI	CCWGG	3 cut(s)	387, 498, 564
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	78, 413, 473, 510
AluI	AGCT	4 cut(s)	78, 413, 473, 510
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	75, 78, 420
ApoI	RAATTY	2 cut(s)	352, 448
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BbvI	GCAGC	3 cut(s)	65, 87, 432
BccI	CCATC	3 cut(s)	367, 482, 508
BciT130I	CCWGG	3 cut(s)	389, 500, 566
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	3 cut(s)	62, 119, 414
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	4 cut(s)	76, 79, 154, 421
BlsI	GCNGC	4 cut(s)	77, 80, 155, 422
Bme1390I	CCNGG	3 cut(s)	389, 500, 566
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	3 cut(s)	389, 500, 566
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	4 cut(s)	148, 326, 364, 516
BmuI	ACTGGG	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	254, 459
BsaJI	CCNNGG	2 cut(s)	45, 499
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
Bse1I	ACTGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	389, 500, 566
BseDI	CCNNGG	2 cut(s)	45, 499
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	65, 87, 432
BsgI	GTGCAG	3 cut(s)	47, 129, 227
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	371
BsiWI	CGTACG	1 cut(s)	144
BslI	CCNNNNNNNGG	4 cut(s)	97, 149, 241, 263
BsnI	GGCC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	3 cut(s)	253, 273, 343
BspACI	CCGC	3 cut(s)	153, 247, 444
BspANI	GGCC	1 cut(s)	267
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	497
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	45, 499
BssMI	GATC	3 cut(s)	253, 273, 343
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	389, 500, 566
Bst4CI	ACNGT	3 cut(s)	182, 469, 546
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	2 cut(s)	107, 222
BstC8I	GCNNGC	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	256, 276, 346
BstMBI	GATC	3 cut(s)	253, 273, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 222, 287
BstNI	CCWGG	3 cut(s)	389, 500, 566
BstSCI	CCNGG	3 cut(s)	387, 498, 564
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	65, 87, 432
BsuRI	GGCC	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	171, 264
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	2 cut(s)	193, 466
BtsIMutI	CAGTG	2 cut(s)	193, 466
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	244
CsiI	ACCWGGT	1 cut(s)	564
Csp6I	GTAC	4 cut(s)	32, 145, 317, 465
CviAII	CATG	2 cut(s)	39, 314
CviJI	RGCY	7 cut(s)	78, 127, 267, 413, 473, 498, 510
CviKI_1	RGCY	7 cut(s)	78, 127, 267, 413, 473, 498, 510
CviQI	GTAC	4 cut(s)	32, 145, 317, 465
DpnI	GATC	3 cut(s)	255, 275, 345
DpnII	GATC	3 cut(s)	253, 273, 343
DraIII	CACNNNGTG	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	387, 498, 564
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	42, 317
FaiI	YATR	8 cut(s)	40, 86, 176, 315, 329, 396, 437, 555
FatI	CATG	2 cut(s)	38, 313
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	76, 79, 154, 421
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	76, 79, 154, 421
FspBI	CTAG	3 cut(s)	62, 119, 414
GluI	GCNGC	4 cut(s)	76, 79, 154, 421
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	2 cut(s)	42, 317
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188III	TCNNGA	5 cut(s)	271, 333, 349, 371, 476
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	149, 308
HpyCH4III	ACNGT	3 cut(s)	182, 469, 546
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	28, 42, 81, 110, 186, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 222, 287
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	42, 317
Kpn2I	TCCGGA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	253, 273, 343
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	495
Lsp1109I	GCAGC	3 cut(s)	65, 87, 432
LweI	GCATC	4 cut(s)	148, 326, 364, 516
MabI	ACCWGGT	1 cut(s)	564
MaeI	CTAG	3 cut(s)	62, 119, 414
MaeII	ACGT	1 cut(s)	147
MalI	GATC	3 cut(s)	255, 275, 345
MboI	GATC	3 cut(s)	253, 273, 343
MboII	GAAGA	2 cut(s)	223, 391
MluCI	AATT	3 cut(s)	237, 352, 448
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	1 cut(s)	278
MroI	TCCGGA	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	3 cut(s)	195, 240, 293
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	78, 444
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	389, 500, 566
MvaI	CCWGG	3 cut(s)	389, 500, 566
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	107, 222, 287
NdeII	GATC	3 cut(s)	253, 273, 343
NlaIII	CATG	2 cut(s)	42, 317
NlaIV	GGNNCC	1 cut(s)	497
NmeAIII	GCCGAG	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	383
Pfl23II	CGTACG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	77, 80, 155, 422
Psp6I	CCWGG	3 cut(s)	387, 498, 564
PspGI	CCWGG	3 cut(s)	387, 498, 564
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	4 cut(s)	33, 146, 318, 466
RsaNI	GTAC	4 cut(s)	32, 145, 317, 465
RseI	CAYNNNNRTG	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	195, 240, 293
SatI	GCNGC	4 cut(s)	76, 79, 154, 421
Sau3AI	GATC	3 cut(s)	253, 273, 343
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	389, 500, 566
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	4 cut(s)	148, 326, 364, 516
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	269, 474
SmoI	CTYRAG	2 cut(s)	269, 474
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	3 cut(s)	237, 352, 448
SsiI	CCGC	3 cut(s)	153, 247, 444
SspMI	CTAG	3 cut(s)	62, 119, 414
StyD4I	CCNGG	3 cut(s)	387, 498, 564
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	182, 469, 546
TaiI	ACGT	1 cut(s)	150
TasI	AATT	3 cut(s)	237, 352, 448
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	3 cut(s)	195, 240, 293
Tru9I	TTAA	3 cut(s)	195, 240, 293
TscAI	CASTG	2 cut(s)	193, 466
TseI	GCWGC	3 cut(s)	75, 78, 420
TspDTI	ATGAA	2 cut(s)	17, 411
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	193, 466
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	352, 448
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	3 cut(s)	62, 119, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.