Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Reverse (-)

751393 .. 752633

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGCAACTCAAAGAAGCTGAGTGTGGCGCTCTCAAGCATCTTGGTGCTGATGTTGCTAGTTGATTTTGGCAGCTCAAACATAGACCAAGATAGGGCGGAATGTGCAGAACAACTAGTAGGGCTTGCCCCATGCCTTCCTTATGTAGGTGGTGATGCCAAAGCTCCCACACTAGACTGTTGCACTGGGATTAAAGAAGTGGAGCAGAAGAGCAAGAAATGCCTCTGTGTCCTAATTAAGGACCGCAACGATCCGAATCTTGGCCTCAAGATCAATGCCACTCTTGCATTACAACTTCCTACTTCTTGTCATGTCCCTGTTAACATATCTAGATGTGTTGATCTCTTGAATTTGCCATCAAACTCTCCGGACGCTAAGATGTTCAGGGAATATGCAAACAAGACTGCAGCTAGCAGCACTGTCCCTATAGCCAGTGGGAATTCTACAAGCAATGGTACAGTTGCTCAAGCAAAGAGTGATGGTGTGAGCCTGGAAAAGAGAGTGCTGGGAGTAGAGATGCTTCTTGGGAGCTTAGCCTTAATGTGGTTTTATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

186

Amino Acids

19.66

Weight (kDa)

7.49

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	98, 244
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	349, 439
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	5 cut(s)	94, 146, 238, 260, 543
AgsI	TTSAA	1 cut(s)	349
AhlI	ACTAGT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	5 cut(s)	19, 75, 164, 410, 531
AluI	AGCT	5 cut(s)	19, 75, 164, 410, 531
AlwI	GGATC	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	3 cut(s)	72, 407, 414
ApoI	RAATTY	2 cut(s)	349, 439
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	164
AsuNHI	GCTAGC	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BbvI	GCAGC	3 cut(s)	84, 419, 426
BccI	CCATC	2 cut(s)	364, 473
BciT130I	CCWGG	1 cut(s)	491
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	5 cut(s)	59, 116, 173, 330, 411
BfmI	CTRYAG	2 cut(s)	405, 426
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	3 cut(s)	73, 408, 415
BlpI	GCTNAGC	1 cut(s)	532
BlsI	GCNGC	3 cut(s)	74, 409, 416
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	491
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	48, 145, 507
BmtI	GCTAGC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	3 cut(s)	19, 251, 450
BsaBI	GATNNNNATC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 146, 238, 260, 543
Bse1I	ACTGG	2 cut(s)	190, 432
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	491
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	5 cut(s)	94, 146, 238, 260, 543
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	190, 432
BseXI	GCAGC	3 cut(s)	84, 419, 426
BseYI	CCCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	299, 407
BslI	CCNNNNNNNGG	5 cut(s)	94, 146, 238, 260, 543
BsmFI	GGGAC	2 cut(s)	299, 407
BsnI	GGCC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	250, 270, 340
Bsp1720I	GCTNAGC	1 cut(s)	532
BspACI	CCGC	2 cut(s)	98, 244
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	12
BspEI	TCCGGA	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	190, 432
BssMI	GATC	3 cut(s)	250, 270, 340
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	3 cut(s)	179, 421, 460
Bst6I	CTCTTC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	126, 412
BstDEI	CTNAG	3 cut(s)	20, 375, 532
BstENI	CCTNNNNNAGG	2 cut(s)	144, 236
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	253, 273, 343
BstMBI	GATC	3 cut(s)	250, 270, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 104, 219, 284
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	2 cut(s)	405, 426
BstV1I	GCAGC	3 cut(s)	84, 419, 426
BsuRI	GGCC	1 cut(s)	264
BtsIMutI	CAGTG	3 cut(s)	183, 417, 439
Cac8I	GCNNGC	2 cut(s)	126, 412
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	2 cut(s)	132, 311
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	3 cut(s)	20, 375, 532
DpnI	GATC	3 cut(s)	252, 272, 342
DpnII	GATC	3 cut(s)	250, 270, 340
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	2 cut(s)	144, 236
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	135, 314
FaiI	YATR	8 cut(s)	83, 133, 144, 312, 326, 393, 428, 552
FaqI	GGGAC	2 cut(s)	299, 407
FatI	CATG	2 cut(s)	131, 310
Fnu4HI	GCNGC	3 cut(s)	73, 408, 415
Fsp4HI	GCNGC	3 cut(s)	73, 408, 415
FspBI	CTAG	5 cut(s)	59, 116, 173, 330, 411
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	73, 408, 415
GsaI	CCCAGC	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	135, 314
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	256
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	268, 330, 346, 368
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	179, 421, 460
HpyCH4V	TGCA	5 cut(s)	107, 183, 287, 395, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 104, 219, 284
HpyF3I	CTNAG	3 cut(s)	20, 375, 532
Hsp92II	CATG	2 cut(s)	135, 314
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	250, 270, 340
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	3 cut(s)	169, 202, 528
LpnPI	CCDG	8 cut(s)	171, 330, 370, 381, 445, 476, 491, 503
Lsp1109I	GCAGC	3 cut(s)	84, 419, 426
LweI	GCATC	3 cut(s)	48, 145, 507
MaeI	CTAG	5 cut(s)	59, 116, 173, 330, 411
MalI	GATC	3 cut(s)	252, 272, 342
MboI	GATC	3 cut(s)	250, 270, 340
MboII	GAAGA	1 cut(s)	220
MluCI	AATT	3 cut(s)	234, 349, 439
MnlI	CCTC	2 cut(s)	233, 275
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	5 cut(s)	192, 237, 321, 539, 556
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	4 cut(s)	55, 104, 219, 284
NdeII	GATC	3 cut(s)	250, 270, 340
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	2 cut(s)	135, 314
PciSI	GCTCTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	74, 409, 416
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	5 cut(s)	192, 237, 321, 539, 556
SatI	GCNGC	3 cut(s)	73, 408, 415
Sau3AI	GATC	3 cut(s)	250, 270, 340
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	491
SetI	ASST	6 cut(s)	21, 77, 151, 166, 412, 533
SfaNI	GCATC	3 cut(s)	48, 145, 507
SfcI	CTRYAG	2 cut(s)	405, 426
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	34, 266, 465
SmoI	CTYRAG	3 cut(s)	34, 266, 465
SpeI	ACTAGT	1 cut(s)	115
Sse9I	AATT	3 cut(s)	234, 349, 439
SsiI	CCGC	2 cut(s)	98, 244
SspMI	CTAG	5 cut(s)	59, 116, 173, 330, 411
StyD4I	CCNGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	179, 421, 460
TasI	AATT	3 cut(s)	234, 349, 439
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	5 cut(s)	192, 237, 321, 539, 556
Tru9I	TTAA	5 cut(s)	192, 237, 321, 539, 556
TscAI	CASTG	3 cut(s)	190, 424, 439
TseI	GCWGC	3 cut(s)	72, 407, 414
TspRI	CASTG	3 cut(s)	190, 424, 439
VpaK11BI	GGWCC	1 cut(s)	241
XagI	CCTNNNNNAGG	2 cut(s)	144, 236
XapI	RAATTY	2 cut(s)	349, 439
XbaI	TCTAGA	1 cut(s)	329
XspI	CTAG	5 cut(s)	59, 116, 173, 330, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.