AT1G55630

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010906
Physical Location & Seq
Reverse (-)
20791635 .. 20793581
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55630.1

Sequence Viewer

Length: 1434 bp
ATGAACTCTGTAATTCATTATAGCACTAGTGTTGCGGTTCGTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAAATTTTGCAATGGTAGCATCGGTGGTGATGTAACCGATAACGGGACCGAAGAGCCCTTGAAGATAACTTGGGAATCTTCGGAGATGGATTGTGAGTTTGACCAGGAGGAAAATGGTGAGAAAATCTCTGTTAGAAAAAGGTTTATGGAGAGTACTAAACTCAGTGCGTCTCGGGTTCTCGATACGTTACAGCAAGATTGTCCCGGTTTCAATACGAAATCAGCTTTAGATGAATTGAATGTTTCAATCTCAGGGCTATTAGTGAGAGAGGTTCTTGTTGGGATCTTAAGAACTCTGAGCTTTGATAATAAAACAAGGTGTGCTAAGCTCGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATTGTTATCATTTACTTATGAAGATATTTGCTGAATGTGGTGAGTATAAAGCCATGTGCAGGCTAATTGATGAGATGATCAAAGACGGTTATCCAACAACAGCATGCACGTTTAATCTATTGATATGTACTTGCGGGGAAGCAGGCCTTGCTAGAGATGTTGTTGAGCAGTTCATCAAGTCGAAAACTTTCAATTACCGACCTTATAAACACTCTTACAATGCCATTTTGCATTCTTTGCTAGGGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTACGCCAGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAGATCGGCTTTATAGATTGCTAGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTGTATACATACAACATCCTCCTCCATCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACCTTCTGAATCATATGAGGGAAGTAGGAGTTGAGCCCGGTGTCATCCATTTCACTACTCTGATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAACGGTGAAAGTTGGATGCACGCCAGATGTTGTTTGCTACACTGTTATGATCACAGGATATATATCAGGTGGGGAGCTCGAGAAAGCCGAAGAAATGTTCAAAGAAATGACAGAAAAGGGGCAACTCCCGAATGTTTTCACATACAATTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTCAAAGAGGCGTGCGCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTTGTAGTGTATAGTACACTGGTGAACAATCTAAAAAACGCGGGGAAGGTTTTAGAGGCTCATGAAGTAGTGAAGGACATGGTAGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAATATAGAAGATCTTAG

Protein Analysis

477

Amino Acids

54.18

Weight (kDa)

7.47

Isoelectric Point (pI)

28.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 224 - 264 3.9e-07 PPR repeat family
PPR_2 PF13041 259 - 303 1.1e-10 PPR repeat family
PPR_3 PF13812 278 - 334 1.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 294 - 338 5e-08 PPR repeat family
PPR_2 PF13041 325 - 372 1e-09 PPR repeat family
PPR_3 PF13812 350 - 405 6.8e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 357 - 389 3.7e-08 PPR repeat
PPR_2 PF13041 360 - 408 7.2e-18 PPR repeat family
PPR PF01535 363 - 392 4.6e-08 PPR repeat
PPR_long PF17177 379 - 460 4.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 391 - 424 7.8e-13 PPR repeat
PPR_2 PF13041 395 - 442 8.5e-16 PPR repeat family
PPR PF01535 398 - 428 3.2e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55630 AT3G60050 AT3G60050
fragaria_vesca FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica MD01G1201100.v1.1
prunus_persica Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis pycom01g21080
rosa_chinensis RchiOBHm_Chr1g0377341
rosa_laevigata RLG00000026527
rosa_multiflora Rmu_sc0001944.1_g000006
rosa_rugosa Rorug01G0402800
rosa_samantha Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana Rw1G036870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccI GTMKAC 1 cut(s) 878
AccII CGCG 3 cut(s) 1215, 1253, 1334
AciI CCGC 6 cut(s) 35, 591, 1213, 1215, 1229, 1334
AclWI GGATC 2 cut(s) 362, 1204
AcsI RAATTY 3 cut(s) 74, 439, 1235
AfaI GTAC 4 cut(s) 226, 586, 713, 1309
AfiI CCNNNNNNNGG 2 cut(s) 114, 516
AflII CTTAAG 1 cut(s) 358
AgsI TTSAA 9 cut(s) 133, 283, 310, 318, 649, 1156, 1240, 1407, 1414
AhlI ACTAGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 8 cut(s) 47, 296, 372, 400, 718, 1019, 1034, 1132
AluI AGCT 8 cut(s) 47, 296, 372, 400, 718, 1019, 1034, 1132
Alw21I GWGCWC 1 cut(s) 1134
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 2 cut(s) 362, 1204
Ama87I CYCGRG 2 cut(s) 243, 1133
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 1 cut(s) 929
ApoI RAATTY 3 cut(s) 74, 439, 1235
Asp700I GAANNNNTTC 2 cut(s) 644, 1190
AspLEI GCGC 1 cut(s) 1253
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 276, 975
AsuHPI GGTGA 6 cut(s) 110, 200, 509, 715, 1072, 1327
AvaI CYCGRG 2 cut(s) 243, 1133
AvaII GGWCC 1 cut(s) 117
BanII GRGCYC 3 cut(s) 129, 975, 1134
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 1134
BbvI GCAGC 1 cut(s) 916
BccI CCATC 2 cut(s) 151, 906
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 2 cut(s) 534, 1104
BcnI CCSGG 2 cut(s) 276, 975
BcoDI GTCTC 1 cut(s) 246
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 5 cut(s) 27, 609, 698, 839, 905
BfrI CTTAAG 1 cut(s) 358
BglII AGATCT 1 cut(s) 1427
BisI GCNGC 1 cut(s) 930
BlpI GCTNAGC 2 cut(s) 396, 1010
BlsI GCNGC 1 cut(s) 931
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 3 cut(s) 176, 276, 975
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 2 cut(s) 243, 1133
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 176, 276, 975
BmsI GCATC 2 cut(s) 99, 1061
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu1102I GCTNAGC 2 cut(s) 396, 1010
BpuEI CTTGAG 1 cut(s) 1244
BpuMI CCSGG 2 cut(s) 276, 975
BsaBI GATNNNNATC 1 cut(s) 1117
BsaJI CCNNGG 1 cut(s) 1213
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 516
Bse1I ACTGG 1 cut(s) 1317
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 1117
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 1213
BseGI GGATG 3 cut(s) 888, 981, 1076
BseJI GATNNNNATC 1 cut(s) 1117
BseLI CCNNNNNNNGG 2 cut(s) 114, 516
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 4 cut(s) 247, 336, 359, 1001
BseNI ACTGG 1 cut(s) 1317
BseRI GAGGAG 1 cut(s) 884
BseXI GCAGC 1 cut(s) 916
BseYI CCCAGC 1 cut(s) 1019
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 3 cut(s) 1215, 1253, 1334
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 1134
BsiHKCI CYCGRG 2 cut(s) 243, 1133
BsiSI CCGG 2 cut(s) 276, 975
BslFI GGGAC 2 cut(s) 130, 258
BslI CCNNNNNNNGG 2 cut(s) 114, 516
BsmAI GTCTC 1 cut(s) 246
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 130, 258
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 1 cut(s) 603
BsoBI CYCGRG 2 cut(s) 243, 1133
Bsp1286I GDGCHC 3 cut(s) 129, 975, 1134
Bsp143I GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
Bsp1720I GCTNAGC 2 cut(s) 396, 1010
BspACI CCGC 6 cut(s) 35, 591, 1213, 1215, 1229, 1334
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 4 cut(s) 246, 335, 360, 1002
BspFNI CGCG 3 cut(s) 1215, 1253, 1334
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 362, 1204
BspQI GCTCTTC 1 cut(s) 117
BspTI CTTAAG 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 1317
BssECI CCNNGG 1 cut(s) 1213
BssMI GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
BssNAI GTATAC 1 cut(s) 879
Bst1107I GTATAC 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 4 cut(s) 545, 711, 1060, 1099
Bst6I CTCTTC 2 cut(s) 65, 117
BstAFI CTTAAG 1 cut(s) 358
BstAPI GCANNNNNTGC 2 cut(s) 605, 694
BstC8I GCNNGC 7 cut(s) 402, 518, 562, 601, 1036, 1076, 1249
BstDEI CTNAG 6 cut(s) 233, 322, 368, 396, 1010, 1431
BstDSI CCRYGG 1 cut(s) 1213
BstF5I GGATG 3 cut(s) 888, 981, 1076
BstFNI CGCG 3 cut(s) 1215, 1253, 1334
BstHHI GCGC 1 cut(s) 1253
BstKTI GATC 6 cut(s) 357, 537, 823, 1107, 1212, 1430
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
BstMWI GCNNNNNNNGC 4 cut(s) 87, 401, 605, 694
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 3 cut(s) 174, 274, 973
BstUI CGCG 3 cut(s) 1215, 1253, 1334
BstV1I GCAGC 1 cut(s) 916
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 2 cut(s) 354, 1427
BstYI RGATCY 2 cut(s) 354, 1427
BstZ17I GTATAC 1 cut(s) 879
BsuRI GGCC 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 1213
BtsCI GGATG 3 cut(s) 888, 981, 1076
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 4 cut(s) 241, 450, 1095, 1310
Cac8I GCNNGC 7 cut(s) 402, 518, 562, 601, 1036, 1076, 1249
CciI TCATGA 1 cut(s) 1354
CfoI GCGC 1 cut(s) 1253
Cfr13I GGNCC 1 cut(s) 117
Cfr42I CCGCGG 1 cut(s) 1216
CseI GACGC 1 cut(s) 228
Csp6I GTAC 4 cut(s) 225, 585, 712, 1308
CviAII CATG 4 cut(s) 511, 561, 1355, 1372
CviQI GTAC 4 cut(s) 225, 585, 712, 1308
DdeI CTNAG 6 cut(s) 233, 322, 368, 396, 1010, 1431
DpnI GATC 6 cut(s) 356, 536, 822, 1106, 1211, 1429
DpnII GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
Eam1104I CTCTTC 2 cut(s) 65, 117
EarI CTCTTC 2 cut(s) 65, 117
Ecl136II GAGCTC 1 cut(s) 1132
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 3 cut(s) 129, 975, 1134
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 1132
Eco88I CYCGRG 2 cut(s) 243, 1133
EcoICRI GAGCTC 1 cut(s) 1132
EcoRII CCWGG 1 cut(s) 174
EcoT38I GRGCYC 3 cut(s) 129, 975, 1134
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 4 cut(s) 514, 564, 1358, 1375
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 2 cut(s) 130, 258
FatI CATG 4 cut(s) 510, 560, 1354, 1371
FauI CCCGC 4 cut(s) 584, 1208, 1222, 1327
FauNDI CATATG 1 cut(s) 951
FbaI TGATCA 2 cut(s) 534, 1104
FblI GTMKAC 1 cut(s) 878
Fnu4HI GCNGC 1 cut(s) 930
FokI GGATG 3 cut(s) 875, 968, 1083
FriOI GRGCYC 3 cut(s) 129, 975, 1134
Fsp4HI GCNGC 1 cut(s) 930
FspBI CTAG 5 cut(s) 27, 609, 698, 839, 905
GlaI GCGC 1 cut(s) 1252
GluI GCNGC 1 cut(s) 930
GsaI CCCAGC 1 cut(s) 1023
HaeIII GGCC 1 cut(s) 603
HapII CCGG 2 cut(s) 276, 975
HgaI GACGC 1 cut(s) 228
HhaI GCGC 1 cut(s) 1253
Hin1II CATG 4 cut(s) 514, 564, 1358, 1375
Hin6I GCGC 1 cut(s) 1251
HinP1I GCGC 1 cut(s) 1251
HindIII AAGCTT 2 cut(s) 45, 1032
HinfI GANTC 3 cut(s) 146, 946, 1271
HpaII CCGG 2 cut(s) 276, 975
HphI GGTGA 6 cut(s) 110, 200, 509, 715, 1072, 1327
Hpy166II GTNNAC 6 cut(s) 431, 733, 759, 879, 1310, 1318
Hpy188I TCNGA 5 cut(s) 154, 369, 774, 945, 999
Hpy188III TCNNGA 6 cut(s) 251, 869, 1135, 1183, 1275, 1355
Hpy8I GTNNAC 6 cut(s) 431, 733, 759, 879, 1310, 1318
HpyAV CCTTC 3 cut(s) 950, 1333, 1360
HpyCH4III ACNGT 4 cut(s) 545, 711, 1060, 1099
HpyCH4IV ACGT 2 cut(s) 257, 566
HpyCH4V TGCA 7 cut(s) 81, 516, 564, 688, 797, 1038, 1074
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 401, 605, 694
HpyF3I CTNAG 6 cut(s) 233, 322, 368, 396, 1010, 1431
HpySE526I ACGT 2 cut(s) 257, 566
Hsp92II CATG 4 cut(s) 514, 564, 1358, 1375
HspAI GCGC 1 cut(s) 1251
Ksp22I TGATCA 2 cut(s) 534, 1104
KspI CCGCGG 1 cut(s) 1216
Kzo9I GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 1129
Lsp1109I GCAGC 1 cut(s) 916
LweI GCATC 2 cut(s) 99, 1061
MaeI CTAG 5 cut(s) 27, 609, 698, 839, 905
MaeII ACGT 2 cut(s) 257, 566
MaeIII GTNAC 3 cut(s) 103, 258, 1283
MalI GATC 6 cut(s) 356, 536, 822, 1106, 1211, 1429
MboI GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
MboII GAAGA 7 cut(s) 52, 134, 141, 145, 490, 761, 1157
MflI RGATCY 2 cut(s) 354, 1427
MhlI GDGCHC 3 cut(s) 129, 975, 1134
MlyI GAGTC 1 cut(s) 1280
MmeI TCCRAC 2 cut(s) 575, 1048
MroXI GAANNNNTTC 2 cut(s) 644, 1190
MseI TTAA 4 cut(s) 359, 570, 852, 936
MslI CAYNNNNRTG 2 cut(s) 788, 1100
MspA1I CMGCKG 1 cut(s) 1215
MspCI CTTAAG 1 cut(s) 358
MspI CCGG 2 cut(s) 276, 975
MspR9I CCNGG 3 cut(s) 176, 276, 975
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 3 cut(s) 1215, 1253, 1334
MwoI GCNNNNNNNGC 4 cut(s) 87, 401, 605, 694
NciI CCSGG 2 cut(s) 276, 975
NdeI CATATG 1 cut(s) 951
NdeII GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
NlaIII CATG 4 cut(s) 514, 564, 1358, 1375
NlaIV GGNNCC 1 cut(s) 118
NmeAIII GCCGAG 1 cut(s) 1040
NspI RCATGY 1 cut(s) 564
PaeI GCATGC 1 cut(s) 564
PaeR7I CTCGAG 1 cut(s) 1133
PagI TCATGA 1 cut(s) 1354
PceI AGGCCT 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 1140
PctI GAATGC 1 cut(s) 688
PdmI GAANNNNTTC 2 cut(s) 644, 1190
PfeI GAWTC 2 cut(s) 146, 946
PkrI GCNGC 1 cut(s) 931
PleI GAGTC 1 cut(s) 1279
PpsI GAGTC 1 cut(s) 1279
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 1134
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 1019
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 2 cut(s) 354, 1427
RsaI GTAC 4 cut(s) 226, 586, 713, 1309
RsaNI GTAC 4 cut(s) 225, 585, 712, 1308
RseI CAYNNNNRTG 2 cut(s) 788, 1100
SacI GAGCTC 1 cut(s) 1134
SacII CCGCGG 1 cut(s) 1216
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 359, 570, 852, 936
SatI GCNGC 1 cut(s) 930
Sau3AI GATC 6 cut(s) 354, 534, 820, 1104, 1209, 1427
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 1 cut(s) 1280
ScrFI CCNGG 3 cut(s) 176, 276, 975
SduI GDGCHC 3 cut(s) 129, 975, 1134
SfaNI GCATC 2 cut(s) 99, 1061
Sfr274I CTCGAG 1 cut(s) 1133
Sfr303I CCGCGG 1 cut(s) 1216
SgrBI CCGCGG 1 cut(s) 1216
SinI GGWCC 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 1133
SmiMI CAYNNNNRTG 2 cut(s) 788, 1100
SmlI CTYRAG 3 cut(s) 358, 1133, 1259
SmoI CTYRAG 3 cut(s) 358, 1133, 1259
SpeI ACTAGT 1 cut(s) 26
SphI GCATGC 1 cut(s) 564
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 6 cut(s) 35, 591, 1213, 1215, 1229, 1334
SspMI CTAG 5 cut(s) 27, 609, 698, 839, 905
SstI GAGCTC 1 cut(s) 1134
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 3 cut(s) 174, 274, 973
TaaI ACNGT 4 cut(s) 545, 711, 1060, 1099
TaiI ACGT 2 cut(s) 260, 569
TaqI TCGA 5 cut(s) 68, 252, 638, 1134, 1205
TaqII GACCGA 1 cut(s) 134
TatI WGTACW 4 cut(s) 224, 584, 711, 1307
TfiI GAWTC 2 cut(s) 146, 946
Tru1I TTAA 4 cut(s) 359, 570, 852, 936
Tru9I TTAA 4 cut(s) 359, 570, 852, 936
TscAI CASTG 4 cut(s) 241, 457, 1102, 1317
TseI GCWGC 1 cut(s) 929
TspDTI ATGAA 8 cut(s) 5, 17, 318, 491, 619, 858, 1371, 1385
TspRI CASTG 4 cut(s) 241, 457, 1102, 1317
Vha464I CTTAAG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 3 cut(s) 74, 439, 1235
XceI RCATGY 1 cut(s) 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 1133
XmiI GTMKAC 1 cut(s) 878
XmnI GAANNNNTTC 2 cut(s) 644, 1190
XspI CTAG 5 cut(s) 27, 609, 698, 839, 905
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.