Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Forward (+)

19292980 .. 19294443

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAACTGTATATATCTGTTTGGTCCAAGGGTTATTCGAAAAATTTCGTGTTATGTTGTCGTAGTACGAAAGTTAAGTGACGGGTGCTTTCGCGGCGATAAGGGGGATAATGGGTATGAGGTTGTGGAGGAAACCTTGAAGACAATGTGGAAAAGTTCGGAATTTGATTCGGGTTTGGATGAGAAACATGGTGTTTATGAATCTGAGAACCGTCCCCGGGAACATTTCTCGCTGCAACGGAACTTTTTTGAGAATGCGAAGATTGATACGGCGAGGGTTCTTAAGGTTCTTAGAGAAGATGGACCTGGTTTTGATACTAAAGCAGCTTTGGGTGAGTTGCATATAGAGGTTTCAGGGCTTCTTGTGAGGGAAGTTCTGTTTGAGATTTTGAAACAGATAGATTATGGGAGTAAAATGCGGTGTGCGAAGTTAGGGTATAAGTTTTTTGTGTGGTCTGGTCAGCTTGAAAATTACAAGCACACAGCAAACACATATCATTTAATGATGAAGATATTTGCTGATTGTGAAGAGTTTAAAGCAATGTGGAGGTTAGTTGATGAGATGATTGAGAAAGGGTATCCGACTACAGCACAGACGTTCAACATTTTGATACGCACTTGTGGTGAGGCAGGCTTGGCTAGGAAAGTCGTGGAAAGGTTCATCAAATCGAAGACGTTTAACTATAGGCCATTTAAACACTCGTACAATGCAATTTTGCATTCCCTTCTTGTGGTGAAGCAGTACAAGTTGATTGAGTGGGTCTATCAACAAATGTTGGCGGAGGGTCACTCAGCAGATATTCTAACTTATAACGTGATGATGTGTGCAAAATATAGATTGGGGAAGTTGGATCAGTTTCACAGACTGCTTGATGAAATGGGTAGGAGTGGATTCACTCCAGATTTTCATACTTACAATATTCTTCTTCATGTACTTGGTAAGGGAGACAAACCGCTTGCAGCTCTTAATCTTTTGAATCACATGAAGGAAGAGGGTTTCAAACCAAGTGTTCTTCACTTCACAACGTTGATAGATGGACTGAGCAGGGCTGGAAATATGGATGCCTGCAAATATTTTTTTGATGAGATGACAAAGCACGAGTGCATGCCGGATGTTGTTTGTTACACTGTAATAATCACCGGGTATATAGTGGCTGGGGAGCTTGAGAAGGCCCAAGTAGTGTTTGATGAGATGATCCCTAATGGGCAGCTTCCGAATGTATTTACATACAATGCCATGATTCGTGGACTTTGTATGGCAAGAAAGTTTGAGGAAGCGTGCTCCATGCTCAAGGTTATGGAATCTAGAGGTTGTAACCCGAATTTCACTGTGTACAGCACCCTAGTAAGTTATTTGCGAAATGCTGGAAAGCTTGCTGAAGCTCATGAAGTAATAACACGCATGACGGAGAAAGGGCAGTATACCCATCTACTTTCAAAGTTCAAGGGATATAGGAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

488

Amino Acids

56.15

Weight (kDa)

8.57

Isoelectric Point (pI)

23.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	164 - 207	1.1e-06	PPR repeat family
PPR_2	PF13041	266 - 313	3.2e-11	PPR repeat family
PPR_long	PF17177	268 - 398	2.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	288 - 344	1.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	304 - 348	5.5e-09	PPR repeat family
PPR_3	PF13812	324 - 380	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 364	1.6e-06	PPR repeat
PPR_2	PF13041	335 - 382	2e-11	PPR repeat family
PPR_3	PF13812	360 - 414	1.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 398	6.1e-07	PPR repeat
PPR_2	PF13041	370 - 418	1.6e-15	PPR repeat family
PPR_3	PF13812	394 - 450	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	402 - 434	5.3e-09	PPR repeat
PPR_2	PF13041	405 - 450	8.9e-13	PPR repeat family
PPR	PF01535	408 - 438	4.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	1421
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	93, 418, 779, 953
AclI	AACGTT	1 cut(s)	1025
AclWI	GGATC	2 cut(s)	858, 1189
AcsI	RAATTY	3 cut(s)	42, 161, 1321
AcuI	CTGAAG	1 cut(s)	1398
AfaI	GTAC	5 cut(s)	66, 704, 743, 933, 1334
AfiI	CCNNNNNNNGG	2 cut(s)	217, 730
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	8 cut(s)	139, 391, 467, 601, 976, 1000, 1437, 1444
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	7 cut(s)	326, 463, 962, 1162, 1210, 1372, 1382
AluI	AGCT	7 cut(s)	326, 463, 962, 1162, 1210, 1372, 1382
Alw21I	GWGCWC	1 cut(s)	1283
Alw26I	GTCTC	1 cut(s)	939
AlwI	GGATC	2 cut(s)	858, 1189
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	686, 1170
ApeKI	GCWGC	4 cut(s)	232, 323, 959, 1207
ApoI	RAATTY	3 cut(s)	42, 161, 1321
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	3 cut(s)	23, 302, 1171
AsuC2I	CCSGG	3 cut(s)	217, 218, 1141
AsuHPI	GGTGA	4 cut(s)	344, 635, 745, 1129
AsuII	TTCGAA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	23, 302
BauI	CACGAG	1 cut(s)	1097
BbsI	GAAGAC	2 cut(s)	146, 677
Bbv12I	GWGCWC	1 cut(s)	1283
BbvI	GCAGC	4 cut(s)	219, 335, 971, 1219
BccI	CCATC	3 cut(s)	293, 1028, 1434
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	588
BcnI	CCSGG	3 cut(s)	217, 218, 1141
BcoDI	GTCTC	1 cut(s)	939
BfaI	CTAG	3 cut(s)	639, 1305, 1343
BfmI	CTRYAG	2 cut(s)	585, 682
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	5 cut(s)	94, 233, 324, 960, 1208
BlsI	GCNGC	5 cut(s)	95, 234, 325, 961, 1209
Bme1390I	CCNGG	4 cut(s)	217, 218, 306, 1141
Bme18I	GGWCC	2 cut(s)	23, 302
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	23, 302, 1171
BmrFI	CCNGG	4 cut(s)	217, 218, 306, 1141
BmsI	GCATC	1 cut(s)	1051
BpiI	GAAGAC	2 cut(s)	146, 677
BplI	GAGNNNNNCTC	2 cut(s)	773, 805
BpmI	CTGGAG	1 cut(s)	882
Bpu14I	TTCGAA	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	1184, 1274
BpuMI	CCSGG	3 cut(s)	217, 218, 1141
BsaJI	CCNNGG	3 cut(s)	26, 215, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 730
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	26, 215, 216
BseGI	GGATG	3 cut(s)	184, 1066, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	217, 730
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	195, 804, 1031
BseXI	GCAGC	4 cut(s)	219, 335, 971, 1219
BseYI	CCCAGC	1 cut(s)	1154
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	688, 1172
BsiHKAI	GWGCWC	1 cut(s)	1283
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	217, 1109, 1140
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	217, 730
BsmAI	GTCTC	1 cut(s)	939
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	2 cut(s)	259, 718
BsnI	GGCC	2 cut(s)	688, 1172
BsoBI	CYCGRG	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	1283
Bsp1407I	TGTACA	1 cut(s)	1332
Bsp143I	GATC	2 cut(s)	850, 1194
BspACI	CCGC	4 cut(s)	93, 418, 779, 953
BspANI	GGCC	2 cut(s)	688, 1172
BspCNI	CTCAG	3 cut(s)	196, 803, 1032
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	1384
BspPI	GGATC	2 cut(s)	858, 1189
BspT104I	TTCGAA	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	1332
BssECI	CCNNGG	3 cut(s)	26, 215, 216
BssMI	GATC	2 cut(s)	850, 1194
BssNAI	GTATAC	1 cut(s)	1422
BssSI	CACGAG	1 cut(s)	1097
BssT1I	CCWWGG	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	1422
Bst2BI	CACGAG	1 cut(s)	1097
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	4 cut(s)	8, 212, 1129, 1330
Bst6I	CTCTTC	2 cut(s)	522, 984
BstAFI	CTTAAG	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	1332
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	6 cut(s)	631, 957, 1066, 1106, 1279, 1374
BstDEI	CTNAG	4 cut(s)	204, 290, 790, 1040
BstF5I	GGATG	3 cut(s)	184, 1066, 1117
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	853, 1197
BstMAI	GTCTC	1 cut(s)	939
BstMBI	GATC	2 cut(s)	850, 1194
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 635
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	1108
BstSCI	CCNGG	4 cut(s)	215, 216, 304, 1139
BstSFI	CTRYAG	2 cut(s)	585, 682
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	219, 335, 971, 1219
BstV2I	GAAGAC	2 cut(s)	146, 677
BstZ17I	GTATAC	1 cut(s)	1422
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	688, 1172
BtsCI	GGATG	3 cut(s)	184, 1066, 1117
BtsIMutI	CAGTG	2 cut(s)	1125, 1326
Cac8I	GCNNGC	6 cut(s)	631, 957, 1066, 1106, 1279, 1374
CciI	TCATGA	1 cut(s)	1384
Cfr13I	GGNCC	3 cut(s)	23, 302, 1171
Cfr9I	CCCGGG	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	5 cut(s)	65, 703, 742, 932, 1333
CviAII	CATG	8 cut(s)	188, 929, 982, 1105, 1237, 1285, 1385, 1402
CviQI	GTAC	5 cut(s)	65, 703, 742, 932, 1333
DdeI	CTNAG	4 cut(s)	204, 290, 790, 1040
DpnI	GATC	2 cut(s)	852, 1196
DpnII	GATC	2 cut(s)	850, 1194
DraI	TTTAAA	2 cut(s)	535, 694
Eam1104I	CTCTTC	2 cut(s)	522, 984
EarI	CTCTTC	2 cut(s)	522, 984
EciI	GGCGGA	1 cut(s)	794
Eco130I	CCWWGG	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	23, 302
Eco57I	CTGAAG	1 cut(s)	1398
Eco88I	CYCGRG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	8 cut(s)	191, 932, 985, 1108, 1240, 1288, 1388, 1405
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	8 cut(s)	187, 928, 981, 1104, 1236, 1284, 1384, 1401
FblI	GTMKAC	1 cut(s)	1421
Fnu4HI	GCNGC	5 cut(s)	94, 233, 324, 960, 1208
FokI	GGATG	3 cut(s)	191, 1073, 1124
Fsp4HI	GCNGC	5 cut(s)	94, 233, 324, 960, 1208
FspBI	CTAG	3 cut(s)	639, 1305, 1343
GluI	GCNGC	5 cut(s)	94, 233, 324, 960, 1208
GsaI	CCCAGC	1 cut(s)	1158
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	688, 1172
HapII	CCGG	3 cut(s)	217, 1109, 1140
Hin1II	CATG	8 cut(s)	191, 932, 985, 1108, 1240, 1288, 1388, 1405
HindIII	AAGCTT	1 cut(s)	1370
HinfI	GANTC	6 cut(s)	167, 200, 891, 976, 1240, 1301
HpaII	CCGG	3 cut(s)	217, 1109, 1140
HphI	GGTGA	4 cut(s)	344, 635, 745, 1129
Hpy166II	GTNNAC	3 cut(s)	1247, 1333, 1422
Hpy188I	TCNGA	4 cut(s)	160, 205, 582, 1215
Hpy188III	TCNNGA	3 cut(s)	899, 1305, 1385
Hpy8I	GTNNAC	3 cut(s)	1247, 1333, 1422
HpyAV	CCTTC	3 cut(s)	734, 979, 1162
HpyCH4III	ACNGT	4 cut(s)	8, 212, 1129, 1330
HpyCH4IV	ACGT	4 cut(s)	596, 674, 813, 1025
HpyCH4V	TGCA	8 cut(s)	235, 340, 710, 718, 827, 959, 1068, 1104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 635
HpyF3I	CTNAG	4 cut(s)	204, 290, 790, 1040
HpySE526I	ACGT	4 cut(s)	596, 674, 813, 1025
Hsp92II	CATG	8 cut(s)	191, 932, 985, 1108, 1240, 1288, 1388, 1405
Kzo9I	GATC	2 cut(s)	850, 1194
LmnI	GCTCC	2 cut(s)	1159, 1286
Lsp1109I	GCAGC	4 cut(s)	219, 335, 971, 1219
LweI	GCATC	1 cut(s)	1051
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	3 cut(s)	639, 1305, 1343
MaeII	ACGT	4 cut(s)	596, 674, 813, 1025
MaeIII	GTNAC	4 cut(s)	77, 785, 1121, 1313
MalI	GATC	2 cut(s)	852, 1196
MboI	GATC	2 cut(s)	850, 1194
MhlI	GDGCHC	1 cut(s)	1283
MluCI	AATT	5 cut(s)	42, 161, 469, 711, 1321
MmeI	TCCRAC	2 cut(s)	605, 828
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	8 cut(s)	74, 282, 500, 534, 678, 693, 966, 1462
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	3 cut(s)	217, 1109, 1140
MspR9I	CCNGG	4 cut(s)	217, 218, 306, 1141
Mva1269I	GAATGC	2 cut(s)	259, 718
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	93, 635
NciI	CCSGG	3 cut(s)	217, 218, 1141
NdeII	GATC	2 cut(s)	850, 1194
NlaIII	CATG	8 cut(s)	191, 932, 985, 1108, 1240, 1288, 1388, 1405
NmuCI	GTSAC	2 cut(s)	77, 785
NspI	RCATGY	1 cut(s)	1108
NspV	TTCGAA	1 cut(s)	37
PaeI	GCATGC	1 cut(s)	1108
PagI	TCATGA	1 cut(s)	1384
PctI	GAATGC	2 cut(s)	259, 718
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	6 cut(s)	167, 200, 891, 976, 1240, 1301
PkrI	GCNGC	5 cut(s)	95, 234, 325, 961, 1209
PsiI	TTATAA	1 cut(s)	810
Psp1406I	AACGTT	1 cut(s)	1025
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	1154
PspGI	CCWGG	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	23, 302, 1171
RsaI	GTAC	5 cut(s)	66, 704, 743, 933, 1334
RsaNI	GTAC	5 cut(s)	65, 703, 742, 932, 1333
SaqAI	TTAA	8 cut(s)	74, 282, 500, 534, 678, 693, 966, 1462
SatI	GCNGC	5 cut(s)	94, 233, 324, 960, 1208
Sau3AI	GATC	2 cut(s)	850, 1194
Sau96I	GGNCC	3 cut(s)	23, 302, 1171
ScrFI	CCNGG	4 cut(s)	217, 218, 306, 1141
SduI	GDGCHC	1 cut(s)	1283
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	1051
SfcI	CTRYAG	2 cut(s)	585, 682
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	2 cut(s)	23, 302
SmaI	CCCGGG	1 cut(s)	218
SmlI	CTYRAG	3 cut(s)	281, 1163, 1289
SmoI	CTYRAG	3 cut(s)	281, 1163, 1289
SphI	GCATGC	1 cut(s)	1108
Sse9I	AATT	5 cut(s)	42, 161, 469, 711, 1321
SsiI	CCGC	4 cut(s)	93, 418, 779, 953
SspI	AATATT	2 cut(s)	919, 1073
SspMI	CTAG	3 cut(s)	639, 1305, 1343
StyD4I	CCNGG	4 cut(s)	215, 216, 304, 1139
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	8, 212, 1129, 1330
TaiI	ACGT	4 cut(s)	599, 677, 816, 1028
TaqI	TCGA	2 cut(s)	37, 668
TasI	AATT	5 cut(s)	42, 161, 469, 711, 1321
TatI	WGTACW	3 cut(s)	741, 931, 1332
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	6 cut(s)	167, 200, 891, 976, 1240, 1301
Tru1I	TTAA	8 cut(s)	74, 282, 500, 534, 678, 693, 966, 1462
Tru9I	TTAA	8 cut(s)	74, 282, 500, 534, 678, 693, 966, 1462
TscAI	CASTG	2 cut(s)	1132, 1333
TseFI	GTSAC	2 cut(s)	77, 785
TseI	GCWGC	4 cut(s)	232, 323, 959, 1207
Tsp45I	GTSAC	2 cut(s)	77, 785
TspDTI	ATGAA	9 cut(s)	17, 213, 521, 649, 888, 896, 917, 998, 1401
TspGWI	ACGGA	2 cut(s)	253, 1421
TspMI	CCCGGG	1 cut(s)	216
TspRI	CASTG	2 cut(s)	1132, 1333
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	23, 302
XapI	RAATTY	3 cut(s)	42, 161, 1321
XbaI	TCTAGA	1 cut(s)	1304
XceI	RCATGY	1 cut(s)	1108
XmaI	CCCGGG	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	1421
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	3 cut(s)	639, 1305, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.