Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Forward (+)

64674131 .. 64675581

Gene Structure 1451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAACTATATATCTCTGTTTGGTCCGAGGGTTTATCACAGGTTTTCGTGTCGTGTAGTGGTAGCAAGAAAATTAAGCGATGGGTGTTTTGGTGGGAATAGAGGGGAGAATGGGGATGGGTCTATTGAGGAACCCATATCGGAAAGTTCAGATTTTGATCCAATTTTGAAGGAGTATGGTTTGTTAGAGAATGAGAGCCATCCCCAGGAGCAATTCTCGGCGAGACGGAGCTTTTTCGAGAATGTGAGGAGTTGTACTATTAGGATTCTTGAGATTTTACAGCAGGATGAACCCGGGTTTGATGCGAAAGCAGCTCTGGATGAGCTGGACATAAAGGTTTCGGGGATTATTGTGAGGGAAGTGTTGTTTGAGATATTGAAGATAGTGAGTTATGGGAATAAAATGCAGTGTGCGAAGCTGGGGTTTAAGTTTTTCGTGTGGTCTGGTCAGCAGGAGAATTACAAGCACACCGCGGACGCGTACCATTTGATGATGAAGATATTTGCAAACTGTGAGGAGTTTAAGGCAATGTGGAGGCTACTTGATGAGATGATTGAGAAAGGGTATCCAACTACAGCGCGGACGTTTAATATTTTGATATGTACTTGTGGTCAGGCAGGCTTGGCTAGGAAAGTGCAGTACAAGTTGATCGAGTGGCTCTATCAACAGATGTTGGCAGAGGGTTACTTGCAGGATATTCTGACTTATAATATTATGATGTGTGCAAAGTATAGATTGGGGAAGTTGGATCAATTTCACAGATTACTTGATGAAATGGGTAGGAGTGGATTCTCACCGGATTTTCATACTTACAACCTTCTTCTTCATGTACTTGGTAAGGGAGACAAACCACTTGCAGCTCTTAATCTTTTGAATCACATGAAGGAAGAAGGTTTCGAGCCAAGGGTTCTTCACTTCACAACATTGATAGATGGACTGAGCAGGGCTGGAAACATGGAGGCCTGCAAGTATTTTTTTGATGAGATGATAAAGTACGACTGCTTGCCTGATGTTGTATGTTATACTGTAATGATCACTGGATATATTGTGGCTGGGGAACTTGAGAAGGCTCTAGAGTTGTTCGATGTGATGGTCACTGATGGTCAGCTTCCAAATGTATTCACATACAATTCTATTATTCGTGGGCTTTGTATGGCAGGAAAATTTGAGGAAGCATGCTCCATGCTTAAAGAGATGGAATCCAGAGGTGTTAATCCAAATTTCACTGTATACAGCACACTAGTAAGTTACTTGCGAAATGCTGGAAAGCTTTCTGAAGCACATGAAGTAATAAGACAGATGGTAGAGAAGGGACAGTATGCCCACCTGCTTTCCAATCTCAAGAGGCGTAGAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

453

Amino Acids

52.0

Weight (kDa)

6.17

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 203	2.1e-06	PPR repeat family
PPR_2	PF13041	232 - 279	1.3e-10	PPR repeat family
PPR_long	PF17177	234 - 364	3.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	290 - 345	2.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	302 - 348	3.9e-11	PPR repeat family
PPR_1	PF12854	333 - 365	6.6e-07	PPR repeat
PPR_2	PF13041	336 - 384	2.8e-16	PPR repeat family
PPR_3	PF13812	336 - 381	7e-08	Pentatricopeptide repeat domain
PPR	PF01535	339 - 368	9e-07	PPR repeat
PPR_long	PF17177	358 - 435	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	368 - 400	5.3e-12	PPR repeat
PPR_2	PF13041	371 - 416	3.7e-14	PPR repeat family
PPR	PF01535	374 - 404	1.2e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AarI	CACCTGC	1 cut(s)	1335
Acc36I	ACCTGC	1 cut(s)	1335
AccI	GTMKAC	1 cut(s)	1230
AccII	CGCG	3 cut(s)	473, 479, 580
AciI	CCGC	3 cut(s)	471, 473, 580
AclWI	GGATC	2 cut(s)	152, 756
AcsI	RAATTY	2 cut(s)	1163, 1219
AcuI	CTGAAG	1 cut(s)	1296
AfaI	GTAC	6 cut(s)	256, 482, 604, 641, 831, 995
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	169, 379, 874
AhlI	ACTAGT	1 cut(s)	1240
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	7 cut(s)	231, 314, 325, 418, 860, 1108, 1270
AluI	AGCT	7 cut(s)	231, 314, 325, 418, 860, 1108, 1270
Alw26I	GTCTC	2 cut(s)	217, 837
AlwI	GGATC	2 cut(s)	152, 756
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	960
ApeKI	GCWGC	2 cut(s)	311, 857
ApoI	RAATTY	2 cut(s)	1163, 1219
Asp700I	GAANNNNTTC	1 cut(s)	1270
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	2 cut(s)	294, 295
AsuHPI	GGTGA	1 cut(s)	786
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	323, 869
BccI	CCATC	8 cut(s)	74, 110, 207, 926, 1084, 1094, 1189, 1294
BciT130I	CCWGG	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	576
BclI	TGATCA	1 cut(s)	1032
BcnI	CCSGG	2 cut(s)	294, 295
BcoDI	GTCTC	2 cut(s)	217, 837
BcuI	ACTAGT	1 cut(s)	1240
BfaI	CTAG	3 cut(s)	627, 1073, 1241
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	1335
BfuI	GTATCC	1 cut(s)	576
BisI	GCNGC	2 cut(s)	312, 858
BlsI	GCNGC	2 cut(s)	313, 859
Bme1390I	CCNGG	3 cut(s)	206, 294, 295
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	3 cut(s)	206, 294, 295
BmsI	GCATC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuEI	CTTGAG	3 cut(s)	290, 1082, 1325
BpuMI	CCSGG	2 cut(s)	294, 295
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	26, 204, 293, 471, 902
BsaWI	WCCGGW	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	1042
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	5 cut(s)	26, 204, 293, 471, 902
BseGI	GGATG	4 cut(s)	121, 199, 292, 325
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	929
BseNI	ACTGG	1 cut(s)	1042
BseRI	GAGGAG	2 cut(s)	262, 530
BseXI	GCAGC	2 cut(s)	323, 869
BseYI	CCCAGC	2 cut(s)	418, 1052
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	3 cut(s)	473, 479, 580
BshFI	GGCC	1 cut(s)	962
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	294, 797
BslFI	GGGAC	1 cut(s)	1326
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	217, 837
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	1326
BsnI	GGCC	1 cut(s)	962
BsoBI	CYCGRG	1 cut(s)	293
Bsp143I	GATC	4 cut(s)	157, 648, 748, 1032
BspACI	CCGC	3 cut(s)	471, 473, 580
BspANI	GGCC	1 cut(s)	962
BspCNI	CTCAG	1 cut(s)	930
BspFNI	CGCG	3 cut(s)	473, 479, 580
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	1335
BspPI	GGATC	2 cut(s)	152, 756
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	1042
BssECI	CCNNGG	5 cut(s)	26, 204, 293, 471, 902
BssMI	GATC	4 cut(s)	157, 648, 748, 1032
BssNAI	GTATAC	1 cut(s)	1231
BssT1I	CCWWGG	1 cut(s)	902
Bst1107I	GTATAC	1 cut(s)	1231
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	512, 1027, 1228, 1317
BstC8I	GCNNGC	4 cut(s)	619, 964, 1004, 1177
BstDEI	CTNAG	1 cut(s)	938
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	121, 199, 292, 325
BstFNI	CGCG	3 cut(s)	473, 479, 580
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	160, 651, 751, 1035
BstMAI	GTCTC	2 cut(s)	217, 837
BstMBI	GATC	4 cut(s)	157, 648, 748, 1032
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 623
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	1179
BstSCI	CCNGG	3 cut(s)	204, 292, 293
BstSFI	CTRYAG	1 cut(s)	573
BstUI	CGCG	3 cut(s)	473, 479, 580
BstV1I	GCAGC	2 cut(s)	323, 869
BstZ17I	GTATAC	1 cut(s)	1231
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	962
BtgI	CCRYGG	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	121, 199, 292, 325
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	4 cut(s)	413, 1035, 1095, 1224
BveI	ACCTGC	1 cut(s)	1335
Cac8I	GCNNGC	4 cut(s)	619, 964, 1004, 1177
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	23
Cfr42I	CCGCGG	1 cut(s)	474
Cfr9I	CCCGGG	1 cut(s)	293
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	6 cut(s)	255, 481, 603, 640, 830, 994
CviAII	CATG	6 cut(s)	827, 880, 955, 1176, 1183, 1283
CviQI	GTAC	6 cut(s)	255, 481, 603, 640, 830, 994
DdeI	CTNAG	1 cut(s)	938
DpnI	GATC	4 cut(s)	159, 650, 750, 1034
DpnII	GATC	4 cut(s)	157, 648, 748, 1032
Eco130I	CCWWGG	1 cut(s)	902
Eco147I	AGGCCT	1 cut(s)	962
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	1296
Eco88I	CYCGRG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	902
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	6 cut(s)	830, 883, 958, 1179, 1186, 1286
FaqI	GGGAC	1 cut(s)	1326
FatI	CATG	6 cut(s)	826, 879, 954, 1175, 1182, 1282
FbaI	TGATCA	1 cut(s)	1032
FblI	GTMKAC	1 cut(s)	1230
Fnu4HI	GCNGC	2 cut(s)	312, 858
FokI	GGATG	4 cut(s)	128, 186, 299, 332
Fsp4HI	GCNGC	2 cut(s)	312, 858
FspBI	CTAG	3 cut(s)	627, 1073, 1241
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	2 cut(s)	312, 858
GsaI	CCCAGC	2 cut(s)	422, 1056
HaeIII	GGCC	1 cut(s)	962
HapII	CCGG	2 cut(s)	294, 797
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	6 cut(s)	830, 883, 958, 1179, 1186, 1286
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	1268
HinfI	GANTC	4 cut(s)	265, 789, 874, 1199
HpaII	CCGG	2 cut(s)	294, 797
HphI	GGTGA	1 cut(s)	786
Hpy166II	GTNNAC	1 cut(s)	1231
Hpy188I	TCNGA	5 cut(s)	27, 142, 151, 702, 1276
Hpy188III	TCNNGA	6 cut(s)	238, 269, 317, 1073, 1203, 1342
Hpy8I	GTNNAC	1 cut(s)	1231
HpyAV	CCTTC	6 cut(s)	163, 827, 877, 884, 1060, 1303
HpyCH4III	ACNGT	4 cut(s)	512, 1027, 1228, 1317
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	7 cut(s)	406, 506, 637, 691, 725, 857, 966
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 623
HpyF3I	CTNAG	1 cut(s)	938
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	6 cut(s)	830, 883, 958, 1179, 1186, 1286
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	1032
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	157, 648, 748, 1032
LmnI	GCTCC	3 cut(s)	208, 228, 1184
Lsp1109I	GCAGC	2 cut(s)	323, 869
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	3 cut(s)	627, 1073, 1241
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	3 cut(s)	683, 1093, 1247
MalI	GATC	4 cut(s)	159, 650, 750, 1034
MboI	GATC	4 cut(s)	157, 648, 748, 1032
MboII	GAAGA	6 cut(s)	391, 508, 812, 815, 899, 902
MluCI	AATT	8 cut(s)	71, 162, 212, 457, 752, 1129, 1163, 1219
MluI	ACGCGT	1 cut(s)	477
MmeI	TCCRAC	2 cut(s)	593, 726
MroXI	GAANNNNTTC	1 cut(s)	1270
MseI	TTAA	7 cut(s)	74, 426, 522, 588, 864, 1188, 1212
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	294, 797
MspR9I	CCNGG	3 cut(s)	206, 294, 295
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	3 cut(s)	473, 479, 580
MwoI	GCNNNNNNNGC	2 cut(s)	311, 623
NciI	CCSGG	2 cut(s)	294, 295
NdeII	GATC	4 cut(s)	157, 648, 748, 1032
NlaIII	CATG	6 cut(s)	830, 883, 958, 1179, 1186, 1286
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	1093
NspI	RCATGY	1 cut(s)	1179
PaeI	GCATGC	1 cut(s)	1179
PaqCI	CACCTGC	1 cut(s)	1335
PceI	AGGCCT	1 cut(s)	962
PdmI	GAANNNNTTC	1 cut(s)	1270
PfeI	GAWTC	4 cut(s)	265, 789, 874, 1199
PkrI	GCNGC	2 cut(s)	313, 859
PsiI	TTATAA	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	2 cut(s)	418, 1052
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	6 cut(s)	256, 482, 604, 641, 831, 995
RsaNI	GTAC	6 cut(s)	255, 481, 603, 640, 830, 994
SacII	CCGCGG	1 cut(s)	474
SaqAI	TTAA	7 cut(s)	74, 426, 522, 588, 864, 1188, 1212
SatI	GCNGC	2 cut(s)	312, 858
Sau3AI	GATC	4 cut(s)	157, 648, 748, 1032
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	206, 294, 295
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	573
Sfr303I	CCGCGG	1 cut(s)	474
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	23
SmaI	CCCGGG	1 cut(s)	295
SmlI	CTYRAG	3 cut(s)	269, 1061, 1340
SmoI	CTYRAG	3 cut(s)	269, 1061, 1340
SpeI	ACTAGT	1 cut(s)	1240
SphI	GCATGC	1 cut(s)	1179
Sse9I	AATT	8 cut(s)	71, 162, 212, 457, 752, 1129, 1163, 1219
SseBI	AGGCCT	1 cut(s)	962
SsiI	CCGC	3 cut(s)	471, 473, 580
SspI	AATATT	2 cut(s)	592, 712
SspMI	CTAG	3 cut(s)	627, 1073, 1241
StuI	AGGCCT	1 cut(s)	962
StyD4I	CCNGG	3 cut(s)	204, 292, 293
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	4 cut(s)	512, 1027, 1228, 1317
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	4 cut(s)	237, 651, 897, 1083
TasI	AATT	8 cut(s)	71, 162, 212, 457, 752, 1129, 1163, 1219
TatI	WGTACW	4 cut(s)	254, 602, 639, 829
TfiI	GAWTC	4 cut(s)	265, 789, 874, 1199
Tru1I	TTAA	7 cut(s)	74, 426, 522, 588, 864, 1188, 1212
Tru9I	TTAA	7 cut(s)	74, 426, 522, 588, 864, 1188, 1212
TscAI	CASTG	4 cut(s)	413, 1042, 1102, 1231
TseFI	GTSAC	1 cut(s)	1093
TseI	GCWGC	2 cut(s)	311, 857
Tsp45I	GTSAC	1 cut(s)	1093
TspDTI	ATGAA	8 cut(s)	17, 303, 509, 786, 794, 815, 896, 1299
TspGWI	ACGGA	1 cut(s)	241
TspMI	CCCGGG	1 cut(s)	293
TspRI	CASTG	4 cut(s)	413, 1042, 1102, 1231
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	2 cut(s)	1163, 1219
XbaI	TCTAGA	1 cut(s)	1072
XceI	RCATGY	1 cut(s)	1179
XmaI	CCCGGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	1230
XmnI	GAANNNNTTC	1 cut(s)	1270
XspI	CTAG	3 cut(s)	627, 1073, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.