Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Reverse (-)

22180000 .. 22181970

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGAACTTGGCACTTGTTTTAGGCACAAATGTAGTTCGTAAAGCTTATCGCTTTCTCTTCATCTCCAGAAAATTCTGCAATGGGAACTTTGGTGGTAATGAAATCGATAATGGTTTCCCTGATTTGGATTGTGGATTTGACGAGGACTCCAATATCAGTGAGCTCAGAAGCATCGATCGAGAAGTGATCTCTGTTCGGAGTAGGTTTTTGGAGAGTGCCAATCATAGTGCGTCTCGTGTTCTCGTGACATTGCAGCTAGATGAATCTGGATTCAATTCAAAGTCAGTTTTAGATGAATTGAATGTTAGAGTCTCAGGGCTTCTAGTGAGGGAGGTTCTTGTAGGGATCTTAAGGAACTTGAGCTATGATAATAAGGCAAGATGTGCGAAACTAGCTTATAGATTCTTCCTGTGGTCTGGAGAACAAGAGTGTTTTAGGCACACAGTGAATTCTTATCATTTGCTTATGAAGATATTTGCAGAGTGTGGAGAGTACAAGGCAATGTGGAGGTTAGTTGATGAGATGGTTCAAGACGGATTCCCGACAACAGCGAGGACGTTTAATCTGTTGATTTGTAGTTGTGGTGAAGCAGGTTTAGCGAAACAAGCTGTTGTGCAGTTCATGAAGTCCAAGACTTTTAATTACCGACCTTTCAAACACTCTTATAACGCGATTTTGAATTCTTTGCTAGGTGTAAAACAGTATAAATTGATTGAGTGGGTTTACAAGCAGATGTTAGAAGACGGGTTTTCGCCAGATGTTCTGACTTATAACATTCTCTTGTGGACAAACTATAGGTTAGGGAAAATGGATAGATTCGACAGGCTGTTTGATGAGATGGCTCGAGATGGGTTCTCTCCGGATTCTTACACATACAACATTTTGCTGCACATTTTGGGGAAAGGGAATAAACCTCTCGCTGCTCTTACTACGTTGAACCATATGAAGGAAGTAGGAATCGACCCGAGTGTCCTCCACTACACTACTTTGATAGACGGTCTGAGCCGTGCAGGGAATCTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGTGAAAGCTGGGTGCAGACCGGATGTTGTTTGTTACACAGTGATGATAACAGGGTATGTTGTATCTGGAGAGCTCGACAAGGCAAAGGAGATGTTTAGAGAGATGACAGTGAAAGGGCAATTACCGAATGTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGGAGAGTTCAGAGAGGCGTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAGTACATTGGTGAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAAGCTCGCAAGGTAATAAGAGAGATGGTGAAGAAAGGACATTATGTTCATTTAGTTCCAAAGATGATGAAATATAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

473

Amino Acids

54.22

Weight (kDa)

8.92

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	149 - 194	7e-06	PPR repeat family
PPR_2	PF13041	221 - 261	6.5e-08	PPR repeat family
PPR_2	PF13041	266 - 299	6.2e-08	PPR repeat family
PPR_3	PF13812	275 - 331	6e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	276 - 380	3.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	292 - 334	1.5e-06	PPR repeat family
PPR_1	PF12854	319 - 351	5.2e-06	PPR repeat
PPR_2	PF13041	322 - 369	6.9e-13	PPR repeat family
PPR	PF01535	326 - 355	6.5e-06	PPR repeat
PPR_3	PF13812	347 - 401	6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 386	2.1e-08	PPR repeat
PPR_2	PF13041	357 - 405	4e-17	PPR repeat family
PPR	PF01535	360 - 389	1.9e-07	PPR repeat
PPR_1	PF12854	388 - 421	9.4e-11	PPR repeat
PPR_2	PF13041	392 - 436	1.6e-13	PPR repeat family
PPR	PF01535	395 - 425	8.2e-10	PPR repeat
PPR_1	PF12854	423 - 456	3.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	666, 771
AasI	GACNNNNNNGTC	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	581
AccII	CGCG	2 cut(s)	671, 1206
AccIII	TCCGGA	1 cut(s)	859
AciI	CCGC	2 cut(s)	1206, 1220
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	4 cut(s)	71, 448, 679, 1282
AdeI	CACNNNGTG	1 cut(s)	445
AfaI	GTAC	3 cut(s)	494, 1034, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	124, 946
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	7 cut(s)	274, 279, 301, 530, 655, 679, 937
AloI	GAACNNNNNNTCC	2 cut(s)	1368, 1400
Alw21I	GWGCWC	2 cut(s)	165, 1125
Alw26I	GTCTC	2 cut(s)	237, 316
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	2 cut(s)	843, 964
Aor13HI	TCCGGA	1 cut(s)	859
ApeKI	GCWGC	3 cut(s)	253, 886, 920
ApoI	RAATTY	4 cut(s)	71, 448, 679, 1282
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
Asp700I	GAANNNNTTC	1 cut(s)	1181
AsuHPI	GGTGA	4 cut(s)	596, 1063, 1318, 1378
AvaI	CYCGRG	2 cut(s)	843, 964
BanII	GRGCYC	2 cut(s)	165, 1125
BauI	CACGAG	2 cut(s)	234, 242
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	2 cut(s)	165, 1125
BbvI	GCAGC	3 cut(s)	265, 873, 907
BccI	CCATC	4 cut(s)	517, 832, 842, 1357
BceAI	ACGGC	1 cut(s)	990
BcoDI	GTCTC	2 cut(s)	237, 316
BfaI	CTAG	6 cut(s)	257, 323, 392, 689, 1040, 1266
BfmI	CTRYAG	1 cut(s)	793
BfrI	CTTAAG	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	581
BisI	GCNGC	3 cut(s)	254, 887, 921
BlsI	GCNGC	3 cut(s)	255, 888, 922
BmcAI	AGTACT	1 cut(s)	1034
BmeT110I	CYCGRG	2 cut(s)	843, 964
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	747
BpmI	CTGGAG	4 cut(s)	49, 438, 1040, 1137
BpuEI	CTTGAG	1 cut(s)	379
Bsa29I	ATCGAT	2 cut(s)	105, 174
BsaWI	WCCGGW	2 cut(s)	859, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 946
Bse3DI	GCAATG	3 cut(s)	85, 248, 507
BseAI	TCCGGA	1 cut(s)	859
BseCI	ATCGAT	2 cut(s)	105, 174
BseGI	GGATG	1 cut(s)	1078
BseLI	CCNNNNNNNGG	2 cut(s)	124, 946
BseMI	GCAATG	3 cut(s)	85, 248, 507
BseMII	CTCAG	3 cut(s)	178, 327, 992
BseXI	GCAGC	3 cut(s)	265, 873, 907
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	4 cut(s)	635, 872, 1029, 1084
Bsh1236I	CGCG	2 cut(s)	671, 1206
Bsh1285I	CGRYCG	1 cut(s)	178
BshVI	ATCGAT	2 cut(s)	105, 174
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	165, 1125
BsiHKCI	CYCGRG	2 cut(s)	843, 964
BsiSI	CCGG	2 cut(s)	860, 1070
BslI	CCNNNNNNNGG	2 cut(s)	124, 946
BsmAI	GTCTC	2 cut(s)	237, 316
BsmBI	CGTCTC	1 cut(s)	237
BsoBI	CYCGRG	2 cut(s)	843, 964
Bsp1286I	GDGCHC	2 cut(s)	165, 1125
Bsp13I	TCCGGA	1 cut(s)	859
Bsp143I	GATC	3 cut(s)	175, 186, 345
BspACI	CCGC	2 cut(s)	1206, 1220
BspCNI	CTCAG	3 cut(s)	177, 326, 993
BspDI	ATCGAT	2 cut(s)	105, 174
BspEI	TCCGGA	1 cut(s)	859
BspFNI	CGCG	2 cut(s)	671, 1206
BspHI	TCATGA	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	349
BsrDI	GCAATG	3 cut(s)	85, 248, 507
BssMI	GATC	3 cut(s)	175, 186, 345
BssSI	CACGAG	2 cut(s)	234, 242
Bst2BI	CACGAG	2 cut(s)	234, 242
Bst4CI	ACNGT	5 cut(s)	445, 702, 998, 1090, 1159
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	1027, 1345
BstDEI	CTNAG	3 cut(s)	164, 313, 1001
BstF5I	GGATG	1 cut(s)	1078
BstFNI	CGCG	2 cut(s)	671, 1206
BstKTI	GATC	3 cut(s)	178, 189, 348
BstMAI	GTCTC	2 cut(s)	237, 316
BstMBI	GATC	3 cut(s)	175, 186, 345
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 392, 596, 605
BstSFI	CTRYAG	1 cut(s)	793
BstUI	CGCG	2 cut(s)	671, 1206
BstV1I	GCAGC	3 cut(s)	265, 873, 907
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
Bsu15I	ATCGAT	2 cut(s)	105, 174
BsuTUI	ATCGAT	2 cut(s)	105, 174
BtsCI	GGATG	1 cut(s)	1078
BtsIMutI	CAGTG	4 cut(s)	163, 450, 1095, 1164
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	1027, 1345
CciI	TCATGA	1 cut(s)	621
ClaI	ATCGAT	2 cut(s)	105, 174
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	493, 1033, 1299
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	3 cut(s)	493, 1033, 1299
DdeI	CTNAG	3 cut(s)	164, 313, 1001
DpnI	GATC	3 cut(s)	177, 188, 347
DpnII	GATC	3 cut(s)	175, 186, 345
DraIII	CACNNNGTG	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	968
DseDI	GACNNNNNNGTC	1 cut(s)	968
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	2 cut(s)	163, 1123
Eco24I	GRGCYC	2 cut(s)	165, 1125
Eco53kI	GAGCTC	2 cut(s)	163, 1123
Eco88I	CYCGRG	2 cut(s)	843, 964
EcoICRI	GAGCTC	2 cut(s)	163, 1123
EcoRI	GAATTC	2 cut(s)	448, 679
EcoT38I	GRGCYC	2 cut(s)	165, 1125
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	1 cut(s)	625
FatI	CATG	1 cut(s)	621
FauI	CCCGC	2 cut(s)	1199, 1213
FauNDI	CATATG	1 cut(s)	942
Fnu4HI	GCNGC	3 cut(s)	254, 887, 921
FokI	GGATG	1 cut(s)	1085
FriOI	GRGCYC	2 cut(s)	165, 1125
Fsp4HI	GCNGC	3 cut(s)	254, 887, 921
FspBI	CTAG	6 cut(s)	257, 323, 392, 689, 1040, 1266
GluI	GCNGC	3 cut(s)	254, 887, 921
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	4 cut(s)	49, 438, 1040, 1137
HapII	CCGG	2 cut(s)	860, 1070
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	625
HindIII	AAGCTT	2 cut(s)	42, 1331
HpaII	CCGG	2 cut(s)	860, 1070
HphI	GGTGA	4 cut(s)	596, 1063, 1318, 1378
Hpy166II	GTNNAC	2 cut(s)	724, 786
Hpy188I	TCNGA	6 cut(s)	167, 198, 765, 1002, 1232, 1339
Hpy8I	GTNNAC	2 cut(s)	724, 786
HpyAV	CCTTC	1 cut(s)	940
HpyCH4III	ACNGT	5 cut(s)	445, 702, 998, 1090, 1159
HpyCH4IV	ACGT	2 cut(s)	557, 932
HpyCH4V	TGCA	8 cut(s)	78, 253, 479, 616, 889, 1010, 1029, 1065
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 392, 596, 605
HpyF3I	CTNAG	3 cut(s)	164, 313, 1001
HpySE526I	ACGT	2 cut(s)	557, 932
Hsp92II	CATG	1 cut(s)	625
Kpn2I	TCCGGA	1 cut(s)	859
Kzo9I	GATC	3 cut(s)	175, 186, 345
Lsp1109I	GCAGC	3 cut(s)	265, 873, 907
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	6 cut(s)	257, 323, 392, 689, 1040, 1266
MaeII	ACGT	2 cut(s)	557, 932
MaeIII	GTNAC	3 cut(s)	244, 1082, 1274
MalI	GATC	3 cut(s)	177, 188, 347
MboI	GATC	3 cut(s)	175, 186, 345
MboII	GAAGA	5 cut(s)	49, 397, 481, 752, 1381
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	165, 1125
MluCI	AATT	9 cut(s)	71, 274, 296, 448, 640, 679, 707, 1169, 1282
MlyI	GAGTC	2 cut(s)	140, 318
MroI	TCCGGA	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	1181
MseI	TTAA	5 cut(s)	350, 561, 639, 1250, 1316
MslI	CAYNNNNRTG	1 cut(s)	1091
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	2 cut(s)	860, 1070
MvnI	CGCG	2 cut(s)	671, 1206
MwoI	GCNNNNNNNGC	4 cut(s)	383, 392, 596, 605
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	3 cut(s)	175, 186, 345
NlaIII	CATG	1 cut(s)	625
NmuCI	GTSAC	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	843
PagI	TCATGA	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	1181
PkrI	GCNGC	3 cut(s)	255, 888, 922
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	2 cut(s)	140, 317
PpsI	GAGTC	2 cut(s)	140, 317
PsiI	TTATAA	2 cut(s)	666, 771
Psp124BI	GAGCTC	2 cut(s)	165, 1125
PspFI	CCCAGC	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	345
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	494, 1034, 1300
RsaNI	GTAC	3 cut(s)	493, 1033, 1299
RseI	CAYNNNNRTG	1 cut(s)	1091
SacI	GAGCTC	2 cut(s)	165, 1125
SaqAI	TTAA	5 cut(s)	350, 561, 639, 1250, 1316
SatI	GCNGC	3 cut(s)	254, 887, 921
Sau3AI	GATC	3 cut(s)	175, 186, 345
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	2 cut(s)	140, 318
SduI	GDGCHC	2 cut(s)	165, 1125
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	793
Sfr274I	CTCGAG	1 cut(s)	843
SlaI	CTCGAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	1091
SmlI	CTYRAG	3 cut(s)	349, 358, 843
SmoI	CTYRAG	3 cut(s)	349, 358, 843
Sse9I	AATT	9 cut(s)	71, 274, 296, 448, 640, 679, 707, 1169, 1282
SsiI	CCGC	2 cut(s)	1206, 1220
SspMI	CTAG	6 cut(s)	257, 323, 392, 689, 1040, 1266
SstI	GAGCTC	2 cut(s)	165, 1125
TaaI	ACNGT	5 cut(s)	445, 702, 998, 1090, 1159
TaiI	ACGT	2 cut(s)	560, 935
TaqI	TCGA	7 cut(s)	105, 174, 178, 819, 844, 960, 1125
TasI	AATT	9 cut(s)	71, 274, 296, 448, 640, 679, 707, 1169, 1282
TatI	WGTACW	3 cut(s)	492, 1032, 1298
Tru1I	TTAA	5 cut(s)	350, 561, 639, 1250, 1316
Tru9I	TTAA	5 cut(s)	350, 561, 639, 1250, 1316
TscAI	CASTG	4 cut(s)	163, 450, 1095, 1164
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	253, 886, 920
Tsp45I	GTSAC	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	4 cut(s)	163, 450, 1095, 1164
Vha464I	CTTAAG	1 cut(s)	349
XapI	RAATTY	4 cut(s)	71, 448, 679, 1282
XbaI	TCTAGA	2 cut(s)	1039, 1265
XhoI	CTCGAG	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	1181
XspI	CTAG	6 cut(s)	257, 323, 392, 689, 1040, 1266
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.