Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Reverse (-)

13279782 .. 13281385

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACTGTATATCCCTGTTTGCTATTAAAAAAATTTCGTGTTATGTTGTCGTAGCACAAAAATTATCTGATGGATGCTCTGGTGGGAATAAAGTGGGTAGTGGGAATGAGTTTATAGAGGAACCCTTGAAGAGAATATGGAGAAGTTCGGATTTAGACTCAATGTTAGATGAGAAAGAGAATGTTTATGAGTATGAGAACCATCCCTGGGAGTATTTCTCACTGAGACAGAGTTCAAGATGCGAAGATTCATATCACAAGGGCCCAGCTAAAAAAGTTGTGGAAAGATTCGTCAAATCAAAGACGTTTAACTATAGGCCATTTAAACAGTCATACAATGCAATTTTGCACTCCCTTCTTTTGGTGAAGCAGCACAAGTTGATTGAGTGGGTCTATCAACAGATGTGGATAGATGGTCACTGGGGAGACAAACCACTTGCAGCTCTTAATCTTTTGAACCACATGAAGGAAATGGGTTTTGATCCAAGTGTTCTTCACTTCACAACATTGATAGATGGACTGAGCAGGGCTGAAAATCTGGATGCCTGCAAGAATTTTTTTGATGAGATGATAAAGCATGAGTGCTTTCCGGATGTGGTTTGTTACACGCTTGAGAAGGCTCAAGGAGTGTTTGATGAGATGATCACTAATGGGCAGCTTCTGAATGTATTTACATACAATGCTATGATCTGTGGGGTTTGTATGGCAGGAAAGTTAGAGGAAGCATGCTTCATGCTTAAGGATATGGAATCCAGAGGCTGTAATCCAAATTTCACCGTATACAGCACCCTAGTAAGTTATTTGCAAAATGCTGGAAAGCTTGCCGAAGCTCTTGAAGTAATAACATATATGATGGAGAAGGGGCAGTGTGTGCATCTACTTTCAAAGTTCAAGGGATATAGGAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

304

Amino Acids

34.88

Weight (kDa)

6.51

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AccIII	TCCGGA	1 cut(s)	589
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	3 cut(s)	33, 553, 769
AfiI	CCNNNNNNNGG	3 cut(s)	208, 361, 466
AflII	CTTAAG	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	130, 237, 457, 836, 885, 892
AjnI	CCWGG	1 cut(s)	206
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	269, 443, 658, 820, 830
AluI	AGCT	5 cut(s)	269, 443, 658, 820, 830
Alw26I	GTCTC	2 cut(s)	220, 420
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	2 cut(s)	661, 759
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	2 cut(s)	262, 317
ApaI	GGGCCC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	370, 440, 655
ApoI	RAATTY	3 cut(s)	33, 553, 769
AspS9I	GGNCC	2 cut(s)	262, 263
AsuHPI	GGTGA	2 cut(s)	376, 766
BaeGI	GKGCMC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	382, 452, 667
BccI	CCATC	5 cut(s)	65, 210, 407, 509, 847
BciT130I	CCWGG	1 cut(s)	208
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	220, 420
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	313
BfrI	CTTAAG	1 cut(s)	737
BglII	AGATCT	1 cut(s)	905
BisI	GCNGC	3 cut(s)	371, 441, 656
BlsI	GCNGC	3 cut(s)	372, 442, 657
Bme1390I	CCNGG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	262, 263
BmiI	GGNNCC	2 cut(s)	123, 264
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	4 cut(s)	65, 230, 532, 883
BmuI	ACTGGG	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpuEI	CTTGAG	2 cut(s)	606, 632
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	206, 207
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 361, 466
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	206, 207
BseGI	GGATG	4 cut(s)	80, 202, 547, 598
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	208, 361, 466
BseMII	CTCAG	2 cut(s)	215, 512
BseNI	ACTGG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	382, 452, 667
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	264, 319
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	3 cut(s)	208, 361, 466
BsmAI	GTCTC	2 cut(s)	220, 420
BsnI	GGCC	2 cut(s)	264, 319
Bsp120I	GGGCCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	481, 642, 687, 905
BspANI	GGCC	2 cut(s)	264, 319
BspCNI	CTCAG	2 cut(s)	216, 513
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	123, 264
BspPI	GGATC	1 cut(s)	476
BspTI	CTTAAG	1 cut(s)	737
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	206, 207
BssMI	GATC	4 cut(s)	481, 642, 687, 905
BssNAI	GTATAC	1 cut(s)	781
Bst1107I	GTATAC	1 cut(s)	781
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	8, 330, 778
Bst6I	CTCTTC	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	871
BstC8I	GCNNGC	3 cut(s)	547, 727, 822
BstDEI	CTNAG	2 cut(s)	224, 521
BstF5I	GGATG	4 cut(s)	80, 202, 547, 598
BstKTI	GATC	4 cut(s)	484, 645, 690, 908
BstMAI	GTCTC	2 cut(s)	220, 420
BstMBI	GATC	4 cut(s)	481, 642, 687, 905
BstMWI	GCNNNNNNNGC	1 cut(s)	871
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	382, 452, 667
BstX2I	RGATCY	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	905
BstZ17I	GTATAC	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	264, 319
BtsCI	GGATG	4 cut(s)	80, 202, 547, 598
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	3 cut(s)	221, 418, 872
Cac8I	GCNNGC	3 cut(s)	547, 727, 822
CaiI	CAGNNNCTG	2 cut(s)	661, 759
Cfr13I	GGNCC	2 cut(s)	262, 263
CspCI	CAANNNNNGTGG	2 cut(s)	386, 421
CviAII	CATG	4 cut(s)	463, 578, 726, 733
DdeI	CTNAG	2 cut(s)	224, 521
DpnI	GATC	4 cut(s)	483, 644, 689, 907
DpnII	GATC	4 cut(s)	481, 642, 687, 905
DraI	TTTAAA	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	4 cut(s)	466, 581, 729, 736
FatI	CATG	4 cut(s)	462, 577, 725, 732
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	371, 441, 656
FokI	GGATG	4 cut(s)	87, 189, 554, 605
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	371, 441, 656
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	3 cut(s)	371, 441, 656
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	264, 319
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	4 cut(s)	466, 581, 729, 736
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	4 cut(s)	158, 248, 288, 749
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	376, 766
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	3 cut(s)	70, 151, 663
Hpy188III	TCNNGA	5 cut(s)	237, 539, 590, 753, 833
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	4 cut(s)	365, 460, 610, 853
HpyCH4III	ACNGT	3 cut(s)	8, 330, 778
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	6 cut(s)	341, 349, 440, 549, 805, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	871
HpyF3I	CTNAG	2 cut(s)	224, 521
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	466, 581, 729, 736
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	481, 642, 687, 905
Lsp1109I	GCAGC	3 cut(s)	382, 452, 667
LweI	GCATC	4 cut(s)	65, 230, 532, 883
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	416, 602
MalI	GATC	4 cut(s)	483, 644, 689, 907
MboI	GATC	4 cut(s)	481, 642, 687, 905
MboII	GAAGA	3 cut(s)	142, 257, 485
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	5 cut(s)	33, 62, 342, 553, 769
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	112, 712, 749
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	6 cut(s)	27, 309, 324, 447, 738, 910
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	871
NdeII	GATC	4 cut(s)	481, 642, 687, 905
NlaIII	CATG	4 cut(s)	466, 581, 729, 736
NlaIV	GGNNCC	2 cut(s)	123, 264
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	729
PasI	CCCWGGG	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	248, 288, 749
PkrI	GCNGC	3 cut(s)	372, 442, 657
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	123, 264
PspOMI	GGGCCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	262, 263
PstNI	CAGNNNCTG	2 cut(s)	661, 759
PsuI	RGATCY	1 cut(s)	905
SaqAI	TTAA	6 cut(s)	27, 309, 324, 447, 738, 910
SatI	GCNGC	3 cut(s)	371, 441, 656
Sau3AI	GATC	4 cut(s)	481, 642, 687, 905
Sau96I	GGNCC	2 cut(s)	262, 263
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	6 cut(s)	271, 308, 445, 660, 822, 832
SfaNI	GCATC	4 cut(s)	65, 230, 532, 883
SfcI	CTRYAG	1 cut(s)	313
SmlI	CTYRAG	3 cut(s)	611, 621, 737
SmoI	CTYRAG	3 cut(s)	611, 621, 737
SphI	GCATGC	1 cut(s)	729
Sse9I	AATT	5 cut(s)	33, 62, 342, 553, 769
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	8, 330, 778
TaiI	ACGT	1 cut(s)	308
TasI	AATT	5 cut(s)	33, 62, 342, 553, 769
TfiI	GAWTC	3 cut(s)	248, 288, 749
Tru1I	TTAA	6 cut(s)	27, 309, 324, 447, 738, 910
Tru9I	TTAA	6 cut(s)	27, 309, 324, 447, 738, 910
TscAI	CASTG	3 cut(s)	228, 425, 872
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	370, 440, 655
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	17, 240, 479, 721
TspRI	CASTG	3 cut(s)	228, 425, 872
Vha464I	CTTAAG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	33, 553, 769
XceI	RCATGY	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.