Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Forward (+)

21686372 .. 21690079

Gene Structure 3708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGAACTGTATATCTCTGTTTGGTACGAGGGTTTATCACAGGTTTTCGTGTTGTGTGGTAGTTTCAAGGAAACTAAGCGATGGAAGATTTGGTGAGATTAGAAGGGATAATGGGTGTAATGGGAAGGAGAGTGTTGAGGAACCCGTGTCGGAAAGTTCTGATTTTGATCCAATTTTGAAGGAGTATGGCTTGTTAGAGAATGAGGGTCCTCCCCGGGAGCGATTCTCGGTTAGGAGAAGCTTTTTCGAGGATGTGAGGAGGTGTACTTCAAGGGTTCTTGAGGTTTTGGAGAAGGATGAGCCGGGGTTTGATGCGAAAGCAGCTCTGGATGAGCTGGATGTTAAGGTTTCGGGGCCTGTGGTGAGGGGGGTGTTGTTTGAGATTTTGAAAGTGGTGAATTATGGGAATAAGATGCGATGCGCGAAGCTGGGGTTTAAGTTTTTCGTGTGGTCTGGTCAGAAGGAGAATTATAGGCACACTGCGGAGGCGTACCATTTGATGATGAAGATATTTGCAGACTGTGAGGAGTTTAAGGCAATGTGGAGGCTGGTTGATGAGATGATTGAGAAAGGGCATCCAACTACGGCGCGAACGTTTAATATTTTGATATGTACTTGTGGTCAGGCAGGGTTGGCTAGGAATGTGGTGGAGAGGTTTATAAAGTCGAAGACGTTTAATTTTAGGCCATTTAAACACTCTTACAATGCTATTTTGCTTTCCCTTCTTGTAGTGAAGCAGTACAAGTTGATCGAGTGGCTCTATCAACAGATGTTGGCAGAGGGTTACTCACAGGATATTCTGACCTACAATATTATGATGTGTGCAAAGTATAGATTGGGGAAGTTGGATCAATTTCACAGATTACTTGATGAAATGGGCAGGAGTGGATTCTCTCCGGATTTTCATACTTACAACCTCCTTCTAAATGTACTTGGTAAGGGAGATAAACCGCTTGCAGCTCTTAATCTTTTAAATCACATGAGGGAAGAAGGTTTTGAGCCAAGGGTTATTCACTTCACAACATTGATAGATGGACTGAGCAGGGCTGGAAACATGGAGGCCTGCAAGTACTTTTTTGATGAGATGATAAAATATGACTGCTTGCCTGATGTTGTGTGTTATACTGTAATGATCACCGGATATATGGTGGCTGGGGAACTTGAGAACGCTCTAGAGTTGTTTGATGAGATGGTCATTGATGGTCAGCTTCCGAATGTATTCACATACAATTCTATTATTCGTGGGCTTTGTATGGCAGGAAAATTTGAGGAAGCATGCTCCATGCTTAAAGAAATGGAATCCAGAGGTGTCAATCCAAATTTCACTGTGTACAGCACACTAGTAAGTTACTTGCGAAATGCTGGAAAGCTTTCTAAAGCACATGAAGTAATACAACATATGGTAGAGAAGGGGCAGTATGCCCACCTGCTTTCCAATCTCAAGAGGCATAGAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

487

Amino Acids

55.96

Weight (kDa)

7.82

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	163 - 206	7.5e-06	PPR repeat family
PPR_3	PF13812	254 - 313	7.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	265 - 312	7.5e-11	PPR repeat family
PPR_3	PF13812	323 - 378	2.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	334 - 381	1.8e-11	PPR repeat family
PPR_3	PF13812	359 - 414	1.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 398	1.3e-07	PPR repeat
PPR_2	PF13041	369 - 417	6.9e-17	PPR repeat family
PPR	PF01535	372 - 401	5.2e-07	PPR repeat
PPR_long	PF17177	387 - 469	2.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	401 - 433	5.8e-12	PPR repeat
PPR_2	PF13041	404 - 449	4.1e-14	PPR repeat family
PPR	PF01535	407 - 437	1.3e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AarI	CACCTGC	1 cut(s)	1434
Acc36I	ACCTGC	1 cut(s)	1434
AccII	CGCG	2 cut(s)	422, 589
AccIII	TCCGGA	1 cut(s)	895
AciI	CCGC	2 cut(s)	482, 950
AclI	AACGTT	1 cut(s)	593
AclWI	GGATC	2 cut(s)	161, 855
AcsI	RAATTY	2 cut(s)	1262, 1318
AfaI	GTAC	8 cut(s)	25, 265, 491, 613, 740, 930, 1070, 1331
AgsI	TTSAA	4 cut(s)	66, 178, 270, 388
AhlI	ACTAGT	1 cut(s)	1339
AluBI	AGCT	7 cut(s)	240, 323, 334, 427, 959, 1207, 1369
AluI	AGCT	7 cut(s)	240, 323, 334, 427, 959, 1207, 1369
AlwI	GGATC	2 cut(s)	161, 855
Ama87I	CYCGRG	1 cut(s)	213
Aor13HI	TCCGGA	1 cut(s)	895
AoxI	GGCC	3 cut(s)	353, 683, 1059
ApeKI	GCWGC	2 cut(s)	320, 956
ApoI	RAATTY	2 cut(s)	1262, 1318
Asp700I	GAANNNNTTC	2 cut(s)	1217, 1369
AspLEI	GCGC	2 cut(s)	422, 589
AspS9I	GGNCC	2 cut(s)	206, 353
AsuC2I	CCSGG	3 cut(s)	214, 215, 303
AsuHPI	GGTGA	4 cut(s)	104, 373, 406, 1126
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	15, 48
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	332, 968
BccI	CCATC	4 cut(s)	74, 1025, 1183, 1193
BceAI	ACGGC	1 cut(s)	600
BclI	TGATCA	1 cut(s)	1131
BcnI	CCSGG	3 cut(s)	214, 215, 303
BcuI	ACTAGT	1 cut(s)	1339
BfaI	CTAG	3 cut(s)	636, 1172, 1340
BfuAI	ACCTGC	1 cut(s)	1434
BisI	GCNGC	2 cut(s)	321, 957
BlsI	GCNGC	2 cut(s)	322, 958
BmcAI	AGTACT	1 cut(s)	1070
Bme1390I	CCNGG	3 cut(s)	214, 215, 303
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	206, 353
BmiI	GGNNCC	3 cut(s)	141, 207, 354
BmrFI	CCNGG	3 cut(s)	214, 215, 303
BmsI	GCATC	4 cut(s)	301, 402, 407, 583
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 770, 802
BpuEI	CTTGAG	3 cut(s)	299, 1181, 1424
BpuMI	CCSGG	3 cut(s)	214, 215, 303
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	212, 213, 302, 1001
BsaWI	WCCGGW	2 cut(s)	895, 1136
Bse3DI	GCAATG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	895
BseDI	CCNNGG	4 cut(s)	212, 213, 302, 1001
BseGI	GGATG	5 cut(s)	256, 301, 334, 343, 574
BseJI	GATNNNNATC	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	1028
BseRI	GAGGAG	2 cut(s)	271, 539
BseXI	GCAGC	2 cut(s)	332, 968
BseYI	CCCAGC	2 cut(s)	427, 1151
Bsh1236I	CGCG	2 cut(s)	422, 589
BshFI	GGCC	3 cut(s)	355, 685, 1061
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	214, 302, 896, 1137
BsnI	GGCC	3 cut(s)	355, 685, 1061
BsoBI	CYCGRG	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	895
Bsp1407I	TGTACA	1 cut(s)	1329
Bsp143I	GATC	4 cut(s)	166, 747, 847, 1131
BspACI	CCGC	2 cut(s)	482, 950
BspANI	GGCC	3 cut(s)	355, 685, 1061
BspCNI	CTCAG	1 cut(s)	1029
BspEI	TCCGGA	1 cut(s)	895
BspFNI	CGCG	2 cut(s)	422, 589
BspLI	GGNNCC	3 cut(s)	141, 207, 354
BspMI	ACCTGC	1 cut(s)	1434
BspPI	GGATC	2 cut(s)	161, 855
BsrDI	GCAATG	1 cut(s)	543
BsrGI	TGTACA	1 cut(s)	1329
BssECI	CCNNGG	4 cut(s)	212, 213, 302, 1001
BssMI	GATC	4 cut(s)	166, 747, 847, 1131
BssT1I	CCWWGG	1 cut(s)	1001
Bst4CI	ACNGT	4 cut(s)	8, 521, 1126, 1327
BstAUI	TGTACA	1 cut(s)	1329
BstC8I	GCNNGC	4 cut(s)	954, 1063, 1103, 1276
BstDEI	CTNAG	2 cut(s)	74, 1037
BstF5I	GGATG	5 cut(s)	256, 301, 334, 343, 574
BstFNI	CGCG	2 cut(s)	422, 589
BstHHI	GCGC	2 cut(s)	422, 589
BstKTI	GATC	4 cut(s)	169, 750, 850, 1134
BstMBI	GATC	4 cut(s)	166, 747, 847, 1131
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 632
BstNSI	RCATGY	1 cut(s)	1278
BstSCI	CCNGG	3 cut(s)	212, 213, 301
BstUI	CGCG	2 cut(s)	422, 589
BstV1I	GCAGC	2 cut(s)	332, 968
BstV2I	GAAGAC	1 cut(s)	674
BsuRI	GGCC	3 cut(s)	355, 685, 1061
BtgZI	GCGATG	2 cut(s)	93, 430
BtsCI	GGATG	5 cut(s)	256, 301, 334, 343, 574
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	477, 1323
BveI	ACCTGC	1 cut(s)	1434
Cac8I	GCNNGC	4 cut(s)	954, 1063, 1103, 1276
CfoI	GCGC	2 cut(s)	422, 589
Cfr13I	GGNCC	2 cut(s)	206, 353
Cfr9I	CCCGGG	1 cut(s)	213
Csp6I	GTAC	8 cut(s)	24, 264, 490, 612, 739, 929, 1069, 1330
CviAII	CATG	5 cut(s)	979, 1054, 1275, 1282, 1382
CviQI	GTAC	8 cut(s)	24, 264, 490, 612, 739, 929, 1069, 1330
DdeI	CTNAG	2 cut(s)	74, 1037
DpnI	GATC	4 cut(s)	168, 749, 849, 1133
DpnII	GATC	4 cut(s)	166, 747, 847, 1131
DraI	TTTAAA	2 cut(s)	691, 972
Eco130I	CCWWGG	1 cut(s)	1001
Eco147I	AGGCCT	1 cut(s)	1061
Eco47I	GGWCC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	2 cut(s)	206, 353
EcoT14I	CCWWGG	1 cut(s)	1001
ErhI	CCWWGG	1 cut(s)	1001
FaeI	CATG	5 cut(s)	982, 1057, 1278, 1285, 1385
FatI	CATG	5 cut(s)	978, 1053, 1274, 1281, 1381
FauNDI	CATATG	1 cut(s)	1398
FbaI	TGATCA	1 cut(s)	1131
Fnu4HI	GCNGC	2 cut(s)	321, 957
FokI	GGATG	5 cut(s)	263, 308, 341, 350, 561
Fsp4HI	GCNGC	2 cut(s)	321, 957
FspBI	CTAG	3 cut(s)	636, 1172, 1340
GlaI	GCGC	2 cut(s)	421, 588
GluI	GCNGC	2 cut(s)	321, 957
GsaI	CCCAGC	2 cut(s)	431, 1155
HaeIII	GGCC	3 cut(s)	355, 685, 1061
HapII	CCGG	4 cut(s)	214, 302, 896, 1137
HhaI	GCGC	2 cut(s)	422, 589
Hin1II	CATG	5 cut(s)	982, 1057, 1278, 1285, 1385
Hin6I	GCGC	2 cut(s)	420, 587
HinP1I	GCGC	2 cut(s)	420, 587
HindIII	AAGCTT	2 cut(s)	238, 1367
HinfI	GANTC	3 cut(s)	222, 888, 1298
HpaII	CCGG	4 cut(s)	214, 302, 896, 1137
HphI	GGTGA	4 cut(s)	104, 373, 406, 1126
Hpy166II	GTNNAC	2 cut(s)	264, 1330
Hpy188I	TCNGA	5 cut(s)	151, 160, 459, 801, 1212
Hpy188III	TCNNGA	6 cut(s)	278, 326, 896, 1172, 1302, 1441
Hpy8I	GTNNAC	2 cut(s)	264, 1330
HpyAV	CCTTC	9 cut(s)	96, 118, 172, 286, 454, 731, 929, 983, 1402
HpyCH4III	ACNGT	4 cut(s)	8, 521, 1126, 1327
HpyCH4IV	ACGT	2 cut(s)	593, 671
HpyCH4V	TGCA	4 cut(s)	515, 824, 956, 1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 632
HpyF3I	CTNAG	2 cut(s)	74, 1037
HpySE526I	ACGT	2 cut(s)	593, 671
Hsp92II	CATG	5 cut(s)	982, 1057, 1278, 1285, 1385
HspAI	GCGC	2 cut(s)	420, 587
Kpn2I	TCCGGA	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	1131
Kzo9I	GATC	4 cut(s)	166, 747, 847, 1131
LmnI	GCTCC	2 cut(s)	217, 1283
Lsp1109I	GCAGC	2 cut(s)	332, 968
LweI	GCATC	4 cut(s)	301, 402, 407, 583
MaeI	CTAG	3 cut(s)	636, 1172, 1340
MaeII	ACGT	2 cut(s)	593, 671
MaeIII	GTNAC	2 cut(s)	782, 1346
MalI	GATC	4 cut(s)	168, 749, 849, 1133
MboI	GATC	4 cut(s)	166, 747, 847, 1131
MboII	GAAGA	4 cut(s)	96, 517, 679, 998
MluCI	AATT	8 cut(s)	171, 397, 466, 676, 851, 1228, 1262, 1318
MmeI	TCCRAC	3 cut(s)	129, 602, 825
MroI	TCCGGA	1 cut(s)	895
MroXI	GAANNNNTTC	2 cut(s)	1217, 1369
MseI	TTAA	9 cut(s)	342, 435, 531, 597, 675, 690, 963, 971, 1287
MspI	CCGG	4 cut(s)	214, 302, 896, 1137
MspR9I	CCNGG	3 cut(s)	214, 215, 303
MvnI	CGCG	2 cut(s)	422, 589
MwoI	GCNNNNNNNGC	2 cut(s)	320, 632
NciI	CCSGG	3 cut(s)	214, 215, 303
NdeI	CATATG	1 cut(s)	1398
NdeII	GATC	4 cut(s)	166, 747, 847, 1131
NlaIII	CATG	5 cut(s)	982, 1057, 1278, 1285, 1385
NlaIV	GGNNCC	3 cut(s)	141, 207, 354
NspI	RCATGY	1 cut(s)	1278
PaeI	GCATGC	1 cut(s)	1278
PaqCI	CACCTGC	1 cut(s)	1434
PceI	AGGCCT	1 cut(s)	1061
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PdmI	GAANNNNTTC	2 cut(s)	1217, 1369
PfeI	GAWTC	3 cut(s)	222, 888, 1298
PkrI	GCNGC	2 cut(s)	322, 958
PpuMI	RGGWCCY	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	659
Psp1406I	AACGTT	1 cut(s)	593
Psp5II	RGGWCCY	1 cut(s)	206
PspFI	CCCAGC	2 cut(s)	427, 1151
PspN4I	GGNNCC	3 cut(s)	141, 207, 354
PspPI	GGNCC	2 cut(s)	206, 353
PspPPI	RGGWCCY	1 cut(s)	206
RsaI	GTAC	8 cut(s)	25, 265, 491, 613, 740, 930, 1070, 1331
RsaNI	GTAC	8 cut(s)	24, 264, 490, 612, 739, 929, 1069, 1330
SaqAI	TTAA	9 cut(s)	342, 435, 531, 597, 675, 690, 963, 971, 1287
SatI	GCNGC	2 cut(s)	321, 957
Sau3AI	GATC	4 cut(s)	166, 747, 847, 1131
Sau96I	GGNCC	2 cut(s)	206, 353
ScaI	AGTACT	1 cut(s)	1070
ScrFI	CCNGG	3 cut(s)	214, 215, 303
SfaNI	GCATC	4 cut(s)	301, 402, 407, 583
SinI	GGWCC	1 cut(s)	206
SmaI	CCCGGG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	278, 1160, 1439
SmoI	CTYRAG	3 cut(s)	278, 1160, 1439
SpeI	ACTAGT	1 cut(s)	1339
SphI	GCATGC	1 cut(s)	1278
Sse9I	AATT	8 cut(s)	171, 397, 466, 676, 851, 1228, 1262, 1318
SseBI	AGGCCT	1 cut(s)	1061
SsiI	CCGC	2 cut(s)	482, 950
SspI	AATATT	2 cut(s)	601, 811
SspMI	CTAG	3 cut(s)	636, 1172, 1340
StuI	AGGCCT	1 cut(s)	1061
StyD4I	CCNGG	3 cut(s)	212, 213, 301
StyI	CCWWGG	1 cut(s)	1001
TaaI	ACNGT	4 cut(s)	8, 521, 1126, 1327
TaiI	ACGT	2 cut(s)	596, 674
TaqI	TCGA	3 cut(s)	246, 665, 750
TasI	AATT	8 cut(s)	171, 397, 466, 676, 851, 1228, 1262, 1318
TatI	WGTACW	6 cut(s)	263, 611, 738, 928, 1068, 1329
TfiI	GAWTC	3 cut(s)	222, 888, 1298
Tru1I	TTAA	9 cut(s)	342, 435, 531, 597, 675, 690, 963, 971, 1287
Tru9I	TTAA	9 cut(s)	342, 435, 531, 597, 675, 690, 963, 971, 1287
TscAI	CASTG	2 cut(s)	484, 1330
TseI	GCWGC	2 cut(s)	320, 956
TspDTI	ATGAA	5 cut(s)	17, 518, 885, 893, 1398
TspMI	CCCGGG	1 cut(s)	213
TspRI	CASTG	2 cut(s)	484, 1330
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	1262, 1318
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	1 cut(s)	1278
XmaI	CCCGGG	1 cut(s)	213
XmnI	GAANNNNTTC	2 cut(s)	1217, 1369
XspI	CTAG	3 cut(s)	636, 1172, 1340
ZrmI	AGTACT	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.