Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Forward (+)

51022690 .. 51023515

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0402800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATCCCTATTATGAACAAAGACTCAGAGACGAAGTCATATACCTCCACTCTCTCTGGCACCAAGGTCCCCCTAATCGCCGAAACCCCATTCCCATTCCCTTTCCCAGTTCCACAATCCGAGCCACCCCAAATGGCGGAAACCCCCAATTGCCGTACCCGATCGCCGCCCAAGAAGGCCCCACCACCAAGAGGAAAACAAGAACCGAAATTGAATTGCCCAGCAGCAACAAGAAGCCCTCCCAACCCGACCCGCGTTCGGAATGCCCGGGTCCGGCTTTGAACGATGACTCAACCTCTGAGTGGCCCTCGTCTGGGTGGACAGTGACTTCAGCCAAGCTCAATTTGGCTCCAGCATCGGCGGAAGAGCAGTTGAGGCACCACGCGCTTCGGCTACACAACAAGGCCTTGGAGGCCTGCAGCGGATTCTTTGAGGGCAATGCCGGGTCGGGTGGTGGGTCCGAGAGTGAGGAGGAAGAAAAGGATTGCAAGGTTGGAGATGAGGAGAATGAGGAGTACAAGTTGTTGTTGAATTTGTTTGTGGAGGAGAGTGGGTTGAGGAGTTATTACGAGGGGAATTGGGATAGTGGTGATTTCTATTGCTTGGTGTGTGGTGGGTTGGGGAAGACGAAGAGGATCAAGGGTTGTATCGGGCTTGTTCAGCACGCGGTTTTGATAAGCAAGACGAAGAAGAAGAGAGCTCACAGGGCTTTTGCTCAGGTTGTGTGTAGGGTTTCAGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

248

Amino Acids

27.43

Weight (kDa)

7.04

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	60, 378
AccII	CGCG	3 cut(s)	256, 386, 668
AciI	CCGC	6 cut(s)	138, 168, 254, 362, 423, 668
AclWI	GGATC	2 cut(s)	12, 644
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	158, 518
AfiI	CCNNNNNNNGG	7 cut(s)	137, 192, 259, 274, 303, 314, 315
AgsI	TTSAA	3 cut(s)	215, 283, 532
AluBI	AGCT	2 cut(s)	340, 701
AluI	AGCT	2 cut(s)	340, 701
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	12, 644
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	4 cut(s)	178, 305, 405, 414
ApeKI	GCWGC	2 cut(s)	225, 420
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	5 cut(s)	68, 179, 272, 306, 459
AsuC2I	CCSGG	3 cut(s)	269, 270, 445
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	3 cut(s)	68, 272, 459
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	60, 378
BanII	GRGCYC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	2 cut(s)	237, 432
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	3 cut(s)	269, 270, 445
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	418
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	168, 226, 421
BlsI	GCNGC	3 cut(s)	169, 227, 422
Bme1390I	CCNGG	3 cut(s)	269, 270, 445
Bme18I	GGWCC	3 cut(s)	68, 272, 459
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	68, 179, 272, 306, 459
BmiI	GGNNCC	8 cut(s)	6, 62, 70, 181, 273, 351, 380, 460
BmrFI	CCNGG	3 cut(s)	269, 270, 445
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	717
BpuMI	CCSGG	3 cut(s)	269, 270, 445
BsaJI	CCNNGG	3 cut(s)	64, 268, 408
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 536, 539, 569
Bsc4I	CCNNNNNNNGG	7 cut(s)	137, 192, 259, 274, 303, 314, 315
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	3 cut(s)	64, 268, 408
BseLI	CCNNNNNNNGG	7 cut(s)	137, 192, 259, 274, 303, 314, 315
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	3 cut(s)	40, 291, 731
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	5 cut(s)	485, 518, 527, 560, 574
BseXI	GCAGC	2 cut(s)	237, 432
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	3 cut(s)	256, 386, 668
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	180, 307, 407, 416
BshNI	GGYRCC	2 cut(s)	60, 378
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	269, 275, 444
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	7 cut(s)	137, 192, 259, 274, 303, 314, 315
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	4 cut(s)	180, 307, 407, 416
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	3 cut(s)	4, 162, 636
BspACI	CCGC	6 cut(s)	138, 168, 254, 362, 423, 668
BspANI	GGCC	4 cut(s)	180, 307, 407, 416
BspCNI	CTCAG	3 cut(s)	39, 292, 730
BspFNI	CGCG	3 cut(s)	256, 386, 668
BspLI	GGNNCC	8 cut(s)	6, 62, 70, 181, 273, 351, 380, 460
BspMAI	CTGCAG	1 cut(s)	422
BspPI	GGATC	2 cut(s)	12, 644
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	2 cut(s)	60, 378
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	64, 268, 408
BssMI	GATC	3 cut(s)	4, 162, 636
BssT1I	CCWWGG	2 cut(s)	64, 408
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	3 cut(s)	360, 626, 689
BstC8I	GCNNGC	2 cut(s)	418, 666
BstDEI	CTNAG	3 cut(s)	26, 300, 717
BstFNI	CGCG	3 cut(s)	256, 386, 668
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	7, 165, 639
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	4, 162, 636
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 385, 413, 661, 707
BstSCI	CCNGG	3 cut(s)	267, 268, 443
BstSFI	CTRYAG	1 cut(s)	418
BstUI	CGCG	3 cut(s)	256, 386, 668
BstV1I	GCAGC	2 cut(s)	237, 432
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	180, 307, 407, 416
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	418, 666
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	5 cut(s)	68, 179, 272, 306, 459
Cfr9I	CCCGGG	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	157, 517
CviQI	GTAC	2 cut(s)	157, 517
DdeI	CTNAG	3 cut(s)	26, 300, 717
DpnI	GATC	3 cut(s)	6, 164, 638
DpnII	GATC	3 cut(s)	4, 162, 636
Eam1104I	CTCTTC	3 cut(s)	360, 626, 689
EarI	CTCTTC	3 cut(s)	360, 626, 689
EciI	GGCGGA	2 cut(s)	153, 377
Ecl136II	GAGCTC	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	64, 408
Eco147I	AGGCCT	2 cut(s)	407, 416
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	3 cut(s)	68, 272, 459
Eco53kI	GAGCTC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	701
EcoO109I	RGGNCCY	2 cut(s)	68, 179
EcoT14I	CCWWGG	2 cut(s)	64, 408
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	2 cut(s)	64, 408
Esp3I	CGTCTC	1 cut(s)	24
FaiI	YATR	3 cut(s)	15, 41, 43
FaqI	GGGAC	1 cut(s)	54
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	168, 226, 421
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	3 cut(s)	168, 226, 421
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	3 cut(s)	168, 226, 421
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	4 cut(s)	180, 307, 407, 416
HapII	CCGG	3 cut(s)	269, 275, 444
HhaI	GCGC	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	24, 290, 426
HpaII	CCGG	3 cut(s)	269, 275, 444
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	5 cut(s)	29, 122, 262, 301, 463
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	420, 489
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 385, 413, 661, 707
HpyF3I	CTNAG	3 cut(s)	26, 300, 717
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	4, 162, 636
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	2 cut(s)	237, 432
LweI	GCATC	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	6, 164, 638
MboI	GATC	3 cut(s)	4, 162, 636
MboII	GAAGA	7 cut(s)	377, 488, 637, 643, 700, 703, 706
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	6 cut(s)	149, 210, 215, 343, 532, 577
MlyI	GAGTC	2 cut(s)	18, 284
MmeI	TCCRAC	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	3 cut(s)	269, 275, 444
MspR9I	CCNGG	3 cut(s)	269, 270, 445
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	269
MvnI	CGCG	3 cut(s)	256, 386, 668
MwoI	GCNNNNNNNGC	5 cut(s)	376, 385, 413, 661, 707
NciI	CCSGG	3 cut(s)	269, 270, 445
NdeII	GATC	3 cut(s)	4, 162, 636
NlaIV	GGNNCC	8 cut(s)	6, 62, 70, 181, 273, 351, 380, 460
NmuCI	GTSAC	1 cut(s)	325
PceI	AGGCCT	2 cut(s)	407, 416
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	426
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	169, 227, 422
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	18, 284
PpsI	GAGTC	2 cut(s)	18, 284
PpuMI	RGGWCCY	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	8 cut(s)	6, 62, 70, 181, 273, 351, 380, 460
PspPI	GGNCC	5 cut(s)	68, 179, 272, 306, 459
PspPPI	RGGWCCY	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	158, 518
RsaNI	GTAC	2 cut(s)	157, 517
SacI	GAGCTC	1 cut(s)	703
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	3 cut(s)	168, 226, 421
Sau3AI	GATC	3 cut(s)	4, 162, 636
Sau96I	GGNCC	5 cut(s)	68, 179, 272, 306, 459
SchI	GAGTC	2 cut(s)	18, 284
ScrFI	CCNGG	3 cut(s)	269, 270, 445
SduI	GDGCHC	1 cut(s)	703
SetI	ASST	7 cut(s)	48, 70, 299, 342, 495, 703, 723
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	418
SfiI	GGCCNNNNNGGCC	1 cut(s)	413
SinI	GGWCC	3 cut(s)	68, 272, 459
SmaI	CCCGGG	1 cut(s)	270
Sse9I	AATT	6 cut(s)	149, 210, 215, 343, 532, 577
SseBI	AGGCCT	2 cut(s)	407, 416
SsiI	CCGC	6 cut(s)	138, 168, 254, 362, 423, 668
SstI	GAGCTC	1 cut(s)	703
StuI	AGGCCT	2 cut(s)	407, 416
StyD4I	CCNGG	3 cut(s)	267, 268, 443
StyI	CCWWGG	2 cut(s)	64, 408
TaaI	ACNGT	1 cut(s)	325
TasI	AATT	6 cut(s)	149, 210, 215, 343, 532, 577
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	426
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	225, 420
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	30
TspMI	CCCGGG	1 cut(s)	268
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	3 cut(s)	68, 272, 459
XapI	RAATTY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmaI	CCCGGG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.