Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010906

Physical Location & Seq

Genomic Coordinates Forward (+)

28621161 .. 28623534

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G294500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAACTGTATATCTCTGTTTGGTCCAAGGGTTATTCAAAAGATTTCGTGTTATTTTGTCGTAGCACGAAAATTAAGTGATGGATGCTTTGGTGGGAATAAAGGGGATAATGGGCATGAGTTTATAGAGGAACCCTTGAAGAGAATATGGCGAAGTTCGGATTTTGATTCAGTTTTAGATGAGAAACAGAATGTTCCTGAGTATGAGAACCGTCCACGGGAGTATTTCTCACTGAGACGGAGTTTTTTCGAGAATGCGAAGATTCATACCAGGAGGGTTCTTGAAGTTCTTCAACAAGATGGCCCTGGGTTTGATACAAAAGCGGCTTTGGATGAGTTGCATATAGAGGTTTCAGGGCTTCTTGTGAGGGAAGTTCTCTTCAAAATTTTGAAACAAGTAAATTATGCCAGTAAAATGCGGTGTGCAAAGTTGGGGTATAAGTTTTTTGTGTGGTCTGGCCAGCTTGAAAATTACAGGCACACAGCAAACACATATCATTTAATGATGAAGATATTTGCAGATTGTGAGGAGTTTAAAGCAATGTGGAGGCTAGTTGATGAGATGATTGAGAAAGGATATCCAACTACAGCACAAACGTTCAACATTTTGATATGCACTTGTGGCGAGGCAGGCTTAGCTAAGAAAGTTGTGGAAAGATTCATCAAATCGAAGACATTTAACTATAGGCCATTTAAACACTCATACAATGCAATTTTGCACTCTCTTGTTGTGGTGAAGCAGTACAAGTTGATTGAGTGGGTATATCAACAGATGTTGGCAGACGGTCACTGCACAGATATTCTAACTTACAATGTTATGATGTATGCAAAATATAGATTGGGGAAGCTGGATCAATTTCACAGACTCCTTGAAGAAATGGGCAGGAGTGGATTCGCTCCAGATTTGCATACTTACAATATTCTTCTTCATGTCCTTGGTAAGGGAGACAAGCCACTTGCCGCGCTTAATCTTTTGAACCACATGAAGGAAGTCGGTTTAGATCCAAGTGTTCTTCACTTCACAACATTGATAGATGGACTAAGCAGGTCTGGAAATTTGGATGCCTGCAAGTATTTTTTTGATGAGATGATAAAGCATGAGTGCTTTCCTGATGTTGTTTGTTATACTGTAATGATATCGGGGTATATTGTGGCTGGGGAGCTTGAGAAGGCTCAAGGGGTGTTTGATGAGATGATCCCTAATGGGCAGCTTCCAAATGTATTTACATACAATGCTATGATTCGTGGCCTTTGTATGGCGGGAAAGTTTGAGGAAGCATGCTCCATGCTTAAGGATATGGAATCTAGAGGCTGCAATCCGAATTTCACTGTATACAGCACCCTAGTAAGTTATTTGCGAAATGCTGGGAAGCTTGCCAAAGCTCATGAAGTAATAACACATATGGTGGAGAAGGGGCAGTATACCCATCTACTTTCGAAGTTCAAGGGATATAGGAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

488

Amino Acids

56.09

Weight (kDa)

8.55

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55630 AT3G60050 AT3G60050
fragaria_vesca	FvH4_7g29500 FvH4_7g29500 FvH4_7g29500 FvH4_7g29500
malus_domestica	MD01G1201100.v1.1
prunus_persica	Prupe.2G083800_v2.0.a1 Prupe.2G294500_v2.0.a1
pyrus_communis	pycom01g21080
rosa_chinensis	RchiOBHm_Chr1g0377341
rosa_laevigata	RLG00000026527
rosa_multiflora	Rmu_sc0001944.1_g000006
rosa_rugosa	Rorug01G0402800
rosa_samantha	Rh1AG420600 Rh1BG379400 Rh1CG393400 Rh1DG410400
rosa_wichuraiana	Rw1G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1035
AccI	GTMKAC	2 cut(s)	1332, 1421
AccII	CGCG	1 cut(s)	962
AciI	CCGC	4 cut(s)	323, 418, 960, 1259
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	3 cut(s)	858, 995, 1189
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	3 cut(s)	384, 1054, 1321
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	4 cut(s)	217, 940, 985, 1255
AflII	CTTAAG	1 cut(s)	1289
AjnI	CCWGG	2 cut(s)	269, 304
AluBI	AGCT	7 cut(s)	463, 638, 847, 1162, 1210, 1372, 1382
AluI	AGCT	7 cut(s)	463, 638, 847, 1162, 1210, 1372, 1382
Alw26I	GTCTC	2 cut(s)	229, 939
AlwI	GGATC	3 cut(s)	858, 995, 1189
AoxI	GGCC	4 cut(s)	301, 457, 686, 1246
ApeKI	GCWGC	2 cut(s)	1207, 1311
ApoI	RAATTY	3 cut(s)	384, 1054, 1321
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	23, 302
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	1436
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	677
BbvI	GCAGC	2 cut(s)	1219, 1298
BccI	CCATC	4 cut(s)	74, 293, 1028, 1434
BciT130I	CCWGG	2 cut(s)	271, 306
BcoDI	GTCTC	2 cut(s)	229, 939
BfaI	CTAG	3 cut(s)	551, 1305, 1343
BfmI	CTRYAG	2 cut(s)	585, 682
BfrI	CTTAAG	1 cut(s)	1289
BfuAI	ACCTGC	1 cut(s)	1035
BisI	GCNGC	4 cut(s)	324, 960, 1208, 1312
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	4 cut(s)	325, 961, 1209, 1313
Bme1390I	CCNGG	2 cut(s)	271, 306
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 302
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	271, 306
BmsI	GCATC	2 cut(s)	74, 1051
BpiI	GAAGAC	1 cut(s)	677
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	882
Bpu1102I	GCTNAGC	1 cut(s)	634
Bpu14I	TTCGAA	1 cut(s)	1436
BpuEI	CTTGAG	2 cut(s)	1158, 1184
BsaJI	CCNNGG	5 cut(s)	26, 215, 304, 305, 934
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 940, 985, 1255
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	271, 306
BseDI	CCNNGG	5 cut(s)	26, 215, 304, 305, 934
BseGI	GGATG	3 cut(s)	89, 337, 1066
BseLI	CCNNNNNNNGG	4 cut(s)	217, 940, 985, 1255
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	189, 224
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	1219, 1298
BseYI	CCCAGC	2 cut(s)	1154, 1364
BsgI	GTGCAG	1 cut(s)	775
Bsh1236I	CGCG	1 cut(s)	962
BshFI	GGCC	4 cut(s)	303, 459, 688, 1248
BslI	CCNNNNNNNGG	4 cut(s)	217, 940, 985, 1255
BsmAI	GTCTC	2 cut(s)	229, 939
BsmBI	CGTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	303, 459, 688, 1248
Bsp119I	TTCGAA	1 cut(s)	1436
Bsp143I	GATC	3 cut(s)	850, 1000, 1194
Bsp1720I	GCTNAGC	1 cut(s)	634
BspACI	CCGC	4 cut(s)	323, 418, 960, 1259
BspANI	GGCC	4 cut(s)	303, 459, 688, 1248
BspCNI	CTCAG	2 cut(s)	190, 225
BspFNI	CGCG	1 cut(s)	962
BspHI	TCATGA	1 cut(s)	1384
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	1035
BspPI	GGATC	3 cut(s)	858, 995, 1189
BspT104I	TTCGAA	1 cut(s)	1436
BspTI	CTTAAG	1 cut(s)	1289
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	5 cut(s)	26, 215, 304, 305, 934
BssMI	GATC	3 cut(s)	850, 1000, 1194
BssNAI	GTATAC	2 cut(s)	1333, 1422
BssT1I	CCWWGG	2 cut(s)	26, 934
Bst1107I	GTATAC	2 cut(s)	1333, 1422
Bst2UI	CCWGG	2 cut(s)	271, 306
Bst4CI	ACNGT	5 cut(s)	8, 212, 785, 1129, 1330
Bst6I	CTCTTC	2 cut(s)	134, 383
BstAFI	CTTAAG	1 cut(s)	1289
BstBI	TTCGAA	1 cut(s)	1436
BstC8I	GCNNGC	5 cut(s)	461, 631, 1066, 1279, 1374
BstDEI	CTNAG	5 cut(s)	198, 233, 634, 639, 1040
BstDSI	CCRYGG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	938
BstF5I	GGATG	3 cut(s)	89, 337, 1066
BstFNI	CGCG	1 cut(s)	962
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	3 cut(s)	853, 1003, 1197
BstMAI	GTCTC	2 cut(s)	229, 939
BstMBI	GATC	3 cut(s)	850, 1000, 1194
BstMWI	GCNNNNNNNGC	3 cut(s)	621, 630, 635
BstNI	CCWGG	2 cut(s)	271, 306
BstNSI	RCATGY	1 cut(s)	1281
BstSCI	CCNGG	2 cut(s)	269, 304
BstSFI	CTRYAG	2 cut(s)	585, 682
BstUI	CGCG	1 cut(s)	962
BstV1I	GCAGC	2 cut(s)	1219, 1298
BstV2I	GAAGAC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	1000
BstZ17I	GTATAC	2 cut(s)	1333, 1422
BsuRI	GGCC	4 cut(s)	303, 459, 688, 1248
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	89, 337, 1066
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	3 cut(s)	230, 787, 1326
BveI	ACCTGC	1 cut(s)	1035
Cac8I	GCNNGC	5 cut(s)	461, 631, 1066, 1279, 1374
CciI	TCATGA	1 cut(s)	1384
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	2 cut(s)	23, 302
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	7 cut(s)	116, 929, 982, 1097, 1278, 1285, 1385
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	5 cut(s)	198, 233, 634, 639, 1040
DpnI	GATC	3 cut(s)	852, 1002, 1196
DpnII	GATC	3 cut(s)	850, 1000, 1194
DraI	TTTAAA	2 cut(s)	535, 694
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	134, 383
EarI	CTCTTC	2 cut(s)	134, 383
Eco130I	CCWWGG	2 cut(s)	26, 934
Eco32I	GATATC	2 cut(s)	578, 1137
Eco47I	GGWCC	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	938
EcoRII	CCWGG	2 cut(s)	269, 304
EcoRV	GATATC	2 cut(s)	578, 1137
EcoT14I	CCWWGG	2 cut(s)	26, 934
ErhI	CCWWGG	2 cut(s)	26, 934
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	7 cut(s)	119, 932, 985, 1100, 1281, 1288, 1388
FatI	CATG	7 cut(s)	115, 928, 981, 1096, 1277, 1284, 1384
FauI	CCCGC	1 cut(s)	1252
FauNDI	CATATG	1 cut(s)	1401
FblI	GTMKAC	2 cut(s)	1332, 1421
Fnu4HI	GCNGC	4 cut(s)	324, 960, 1208, 1312
FokI	GGATG	3 cut(s)	96, 344, 1073
Fsp4HI	GCNGC	4 cut(s)	324, 960, 1208, 1312
FspBI	CTAG	3 cut(s)	551, 1305, 1343
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	4 cut(s)	324, 960, 1208, 1312
GsaI	CCCAGC	2 cut(s)	1158, 1368
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	4 cut(s)	303, 459, 688, 1248
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	7 cut(s)	119, 932, 985, 1100, 1281, 1288, 1388
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HindIII	AAGCTT	1 cut(s)	1370
HinfI	GANTC	7 cut(s)	167, 262, 657, 864, 891, 1240, 1301
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	3 cut(s)	215, 1333, 1422
Hpy188I	TCNGA	2 cut(s)	160, 1320
Hpy188III	TCNNGA	8 cut(s)	197, 250, 281, 899, 1050, 1109, 1305, 1385
Hpy8I	GTNNAC	3 cut(s)	215, 1333, 1422
HpyAV	CCTTC	3 cut(s)	979, 1162, 1405
HpyCH4III	ACNGT	5 cut(s)	8, 212, 785, 1129, 1330
HpyCH4IV	ACGT	1 cut(s)	596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	621, 630, 635
HpyF3I	CTNAG	5 cut(s)	198, 233, 634, 639, 1040
HpySE526I	ACGT	1 cut(s)	596
Hsp92II	CATG	7 cut(s)	119, 932, 985, 1100, 1281, 1288, 1388
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	3 cut(s)	850, 1000, 1194
LmnI	GCTCC	3 cut(s)	901, 1159, 1286
Lsp1109I	GCAGC	2 cut(s)	1219, 1298
LweI	GCATC	2 cut(s)	74, 1051
MaeI	CTAG	3 cut(s)	551, 1305, 1343
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	3 cut(s)	852, 1002, 1196
MboI	GATC	3 cut(s)	850, 1000, 1194
MflI	RGATCY	1 cut(s)	1000
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	8 cut(s)	71, 384, 400, 469, 711, 854, 1054, 1321
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	9 cut(s)	121, 267, 340, 360, 520, 540, 619, 1264, 1301
Mox20I	TGGCCA	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	7 cut(s)	74, 500, 534, 678, 693, 966, 1290
Msp20I	TGGCCA	1 cut(s)	459
MspCI	CTTAAG	1 cut(s)	1289
MspR9I	CCNGG	2 cut(s)	271, 306
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	2 cut(s)	271, 306
MvnI	CGCG	1 cut(s)	962
MwoI	GCNNNNNNNGC	3 cut(s)	621, 630, 635
NdeI	CATATG	1 cut(s)	1401
NdeII	GATC	3 cut(s)	850, 1000, 1194
NlaIII	CATG	7 cut(s)	119, 932, 985, 1100, 1281, 1288, 1388
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	1 cut(s)	1281
NspV	TTCGAA	1 cut(s)	1436
PaeI	GCATGC	1 cut(s)	1281
PagI	TCATGA	1 cut(s)	1384
PasI	CCCWGGG	1 cut(s)	305
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	6 cut(s)	167, 262, 657, 891, 1240, 1301
PkrI	GCNGC	4 cut(s)	325, 961, 1209, 1313
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
Psp1406I	AACGTT	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	269, 304
PspFI	CCCAGC	2 cut(s)	1154, 1364
PspGI	CCWGG	2 cut(s)	269, 304
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	23, 302
PsuI	RGATCY	1 cut(s)	1000
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SaqAI	TTAA	7 cut(s)	74, 500, 534, 678, 693, 966, 1290
SatI	GCNGC	4 cut(s)	324, 960, 1208, 1312
Sau3AI	GATC	3 cut(s)	850, 1000, 1194
Sau96I	GGNCC	2 cut(s)	23, 302
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	2 cut(s)	271, 306
SfaNI	GCATC	2 cut(s)	74, 1051
SfcI	CTRYAG	2 cut(s)	585, 682
SfuI	TTCGAA	1 cut(s)	1436
SinI	GGWCC	1 cut(s)	23
SmlI	CTYRAG	3 cut(s)	1163, 1173, 1289
SmoI	CTYRAG	3 cut(s)	1163, 1173, 1289
SphI	GCATGC	1 cut(s)	1281
Sse9I	AATT	8 cut(s)	71, 384, 400, 469, 711, 854, 1054, 1321
SsiI	CCGC	4 cut(s)	323, 418, 960, 1259
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	3 cut(s)	551, 1305, 1343
StyD4I	CCNGG	2 cut(s)	269, 304
StyI	CCWWGG	2 cut(s)	26, 934
TaaI	ACNGT	5 cut(s)	8, 212, 785, 1129, 1330
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	3 cut(s)	249, 668, 1436
TasI	AATT	8 cut(s)	71, 384, 400, 469, 711, 854, 1054, 1321
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	2 cut(s)	326, 962
TfiI	GAWTC	6 cut(s)	167, 262, 657, 891, 1240, 1301
Tru1I	TTAA	7 cut(s)	74, 500, 534, 678, 693, 966, 1290
Tru9I	TTAA	7 cut(s)	74, 500, 534, 678, 693, 966, 1290
TscAI	CASTG	3 cut(s)	237, 794, 1333
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	2 cut(s)	1207, 1311
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	7 cut(s)	17, 254, 521, 649, 917, 998, 1401
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	237, 794, 1333
Vha464I	CTTAAG	1 cut(s)	1289
VpaK11BI	GGWCC	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	938
XapI	RAATTY	3 cut(s)	384, 1054, 1321
XbaI	TCTAGA	1 cut(s)	1304
XceI	RCATGY	1 cut(s)	1281
XmiI	GTMKAC	2 cut(s)	1332, 1421
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	3 cut(s)	551, 1305, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.