MD01G1201100.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
29752883 .. 29754346
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1201100.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGAACTGTATATATCTGTTTGGTCCAAGGGTTATTCGAAAAATTTCGTGTTATGTTGTCGTAGTACGAAAGTTAAGTGACGGGTGCTTTCGCGGCGATAAGGGGGATAATGGGTATGAGTTTGTGGAGGAAACCTTGAAGACAATGTGGAAAAGTTCGGAATTTGATTCGGTTTTGGATGAGAAACATGGTGTTTGTGAATCTGAGAACCGTCCCCGGGAACATTTCTCGCTGCGACGGAGCTTTTTCAAGAATGCGAAGATTGATACCGCGAGGGTTCTTAAAGTTCTTAGAGAAGATGGACCTGGTTTTGATACTAAAGCAGCTTTGGGTGAGTTGCGTATAGAGGTTTCAGGGCTTCTTGTGAGGGAAGTTCTGTTTGAGATTTTGAAACAGATAGATTATGGGAGTAAAATGCGGTGTGCGAAGTTGGGGTATAAGTTTTTTGTGTGGTCTGGTCAGCTTGAAAATTACAAGCACACAGCAAACACATATCATTTAATGATGAAGATATTTGCTGATTGTGAAGAGTTTAAAGCAATGTGGAGGTTAGTTGATGAGATGATCGAGAAAGGGTATCCGACTACAGCACAGACGTTCAACATTTTGATACGCACTTGTGGTGAGGCAGGCTTGGCTAGGAAAGTAGTGGAAAGGTTCATCAAATCGAAGACGTTTAACTATAGGCCATTTAAACACTCGTACAACGCAATTTTGCATTCCCTTCTTGTGGTGAAGCAGTACAAGTTGATTGAGTGGGCCTATCAACAGATGTTGGCGGAGGGTCACTCAGCAGATATTCTAACTTATAACGTGATGATGTGTGCAAAATATAGATTGGGGAAGTTGGATCAGTTTCACAGACTGCTTGACGAAATGGGTAGGAGTGGATTCACTCCAGATTTTCATACTTACAATATTCTTCTTCATGTACTTGGTAAGGGAGACAAACCGCTTGCAGCTCTTAATCTTTTGAATCACATGAAGGAAGAGGGTTTCAAACCAAGTGTTCTTCACTTCACAACGTTGATAGATGGACTGAGCAGGGCTGGAAATATGGATGCCTGCAAATATTTTTTTGATGAGATGACAAAGCACGAGTGCACGCCGGATGTTGTTTGTTACACTGTAATGATCACCGGGTATATTGTGGCTGGGGAGCTTGAGAAGGCCCAAGTTGTGTTTGATGAGATGATCCCTAATGGGCAGCTTCCGAATGTATTTACATACAATGCCATGATTCGTGGACTTTGTATGGCAAGAAAGTTTGAGGAAGCGTGCTCCGTGCTCAAGGTTATGGAATCCAGAGGCTGTAACCCGAATTTCACTGTGTACAGCACCCTAGTAAGTTATTTGCGAAATGCTGGAAAGCTTGCTGAAGCTCATGAAGTAATAACACGCATGATGGAGAAAGGGCAGTATACCCATCTACTTTCAAAGTTCAAGGGATATAGGAGATGTTAA

Protein Analysis

488

Amino Acids

56.16

Weight (kDa)

8.83

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 164 - 207 1.1e-06 PPR repeat family
PPR_2 PF13041 266 - 313 3.2e-11 PPR repeat family
PPR_long PF17177 268 - 398 1.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 288 - 344 1.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 304 - 348 5.5e-09 PPR repeat family
PPR_3 PF13812 324 - 379 3.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 332 - 364 1.6e-06 PPR repeat
PPR_2 PF13041 335 - 382 3.4e-12 PPR repeat family
PPR_3 PF13812 360 - 414 2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 367 - 398 5.5e-07 PPR repeat
PPR_2 PF13041 370 - 418 9.7e-16 PPR repeat family
PPR_3 PF13812 394 - 450 1.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 402 - 434 4.7e-09 PPR repeat
PPR_2 PF13041 405 - 450 6.6e-13 PPR repeat family
PPR PF01535 408 - 438 3.1e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010906)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
AccI GTMKAC 1 cut(s) 1421
AccII CGCG 2 cut(s) 93, 272
AciI CCGC 5 cut(s) 93, 270, 418, 779, 953
AclI AACGTT 1 cut(s) 1025
AclWI GGATC 2 cut(s) 858, 1189
AcsI RAATTY 3 cut(s) 42, 161, 1321
AcuI CTGAAG 1 cut(s) 1398
AfaI GTAC 5 cut(s) 66, 704, 743, 933, 1334
AfiI CCNNNNNNNGG 2 cut(s) 217, 730
AgsI TTSAA 9 cut(s) 139, 250, 391, 467, 601, 976, 1000, 1437, 1444
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 8 cut(s) 243, 326, 463, 962, 1162, 1210, 1372, 1382
AluI AGCT 8 cut(s) 243, 326, 463, 962, 1162, 1210, 1372, 1382
Alw21I GWGCWC 3 cut(s) 1106, 1283, 1290
Alw26I GTCTC 1 cut(s) 939
Alw44I GTGCAC 1 cut(s) 1102
AlwI GGATC 2 cut(s) 858, 1189
AlwNI CAGNNNCTG 1 cut(s) 1311
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 3 cut(s) 686, 759, 1170
ApaLI GTGCAC 1 cut(s) 1102
ApeKI GCWGC 4 cut(s) 232, 323, 959, 1207
ApoI RAATTY 3 cut(s) 42, 161, 1321
Asp700I GAANNNNTTC 1 cut(s) 43
AspS9I GGNCC 4 cut(s) 23, 302, 759, 1171
AsuC2I CCSGG 3 cut(s) 217, 218, 1141
AsuHPI GGTGA 4 cut(s) 344, 635, 745, 1129
AsuII TTCGAA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 2 cut(s) 23, 302
BaeGI GKGCMC 1 cut(s) 1106
BauI CACGAG 1 cut(s) 1097
BbsI GAAGAC 2 cut(s) 146, 677
Bbv12I GWGCWC 3 cut(s) 1106, 1283, 1290
BbvI GCAGC 4 cut(s) 219, 335, 971, 1219
BccI CCATC 4 cut(s) 293, 1028, 1399, 1434
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 1134
BcnI CCSGG 3 cut(s) 217, 218, 1141
BcoDI GTCTC 1 cut(s) 939
BfaI CTAG 2 cut(s) 639, 1343
BfmI CTRYAG 2 cut(s) 585, 682
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 5 cut(s) 94, 233, 324, 960, 1208
BlsI GCNGC 5 cut(s) 95, 234, 325, 961, 1209
Bme1390I CCNGG 4 cut(s) 217, 218, 306, 1141
Bme18I GGWCC 2 cut(s) 23, 302
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 4 cut(s) 23, 302, 759, 1171
BmrFI CCNGG 4 cut(s) 217, 218, 306, 1141
BmsI GCATC 1 cut(s) 1051
BpiI GAAGAC 2 cut(s) 146, 677
BplI GAGNNNNNCTC 2 cut(s) 773, 805
BpmI CTGGAG 1 cut(s) 882
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 1184, 1274
BpuMI CCSGG 3 cut(s) 217, 218, 1141
BsaJI CCNNGG 3 cut(s) 26, 215, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 730
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 26, 215, 216
BseGI GGATG 3 cut(s) 184, 1066, 1117
BseLI CCNNNNNNNGG 2 cut(s) 217, 730
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 195, 804, 1031
BseSI GKGCMC 1 cut(s) 1106
BseXI GCAGC 4 cut(s) 219, 335, 971, 1219
BseYI CCCAGC 1 cut(s) 1154
Bsh1236I CGCG 2 cut(s) 93, 272
BshFI GGCC 3 cut(s) 688, 761, 1172
BsiHKAI GWGCWC 3 cut(s) 1106, 1283, 1290
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 3 cut(s) 217, 1109, 1140
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 217, 730
BsmAI GTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 198
BsmI GAATGC 2 cut(s) 259, 718
BsnI GGCC 3 cut(s) 688, 761, 1172
BsoBI CYCGRG 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 37
Bsp1286I GDGCHC 3 cut(s) 1106, 1283, 1290
Bsp1407I TGTACA 1 cut(s) 1332
Bsp143I GATC 4 cut(s) 564, 850, 1134, 1194
BspACI CCGC 5 cut(s) 93, 270, 418, 779, 953
BspANI GGCC 3 cut(s) 688, 761, 1172
BspCNI CTCAG 3 cut(s) 196, 803, 1032
BspFNI CGCG 2 cut(s) 93, 272
BspHI TCATGA 1 cut(s) 1384
BspPI GGATC 2 cut(s) 858, 1189
BspT104I TTCGAA 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 1332
BssECI CCNNGG 3 cut(s) 26, 215, 216
BssMI GATC 4 cut(s) 564, 850, 1134, 1194
BssNAI GTATAC 1 cut(s) 1422
BssSI CACGAG 1 cut(s) 1097
BssT1I CCWWGG 1 cut(s) 26
Bst1107I GTATAC 1 cut(s) 1422
Bst2BI CACGAG 1 cut(s) 1097
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 4 cut(s) 8, 212, 1129, 1330
Bst6I CTCTTC 2 cut(s) 522, 984
BstAUI TGTACA 1 cut(s) 1332
BstBI TTCGAA 1 cut(s) 37
BstC8I GCNNGC 6 cut(s) 631, 957, 1066, 1106, 1279, 1374
BstDEI CTNAG 4 cut(s) 204, 290, 790, 1040
BstF5I GGATG 3 cut(s) 184, 1066, 1117
BstFNI CGCG 2 cut(s) 93, 272
BstKTI GATC 4 cut(s) 567, 853, 1137, 1197
BstMAI GTCTC 1 cut(s) 939
BstMBI GATC 4 cut(s) 564, 850, 1134, 1194
BstMWI GCNNNNNNNGC 2 cut(s) 93, 635
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 4 cut(s) 215, 216, 304, 1139
BstSFI CTRYAG 2 cut(s) 585, 682
BstSLI GKGCMC 1 cut(s) 1106
BstUI CGCG 2 cut(s) 93, 272
BstV1I GCAGC 4 cut(s) 219, 335, 971, 1219
BstV2I GAAGAC 2 cut(s) 146, 677
BstZ17I GTATAC 1 cut(s) 1422
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 3 cut(s) 688, 761, 1172
BtsCI GGATG 3 cut(s) 184, 1066, 1117
BtsIMutI CAGTG 2 cut(s) 1125, 1326
Cac8I GCNNGC 6 cut(s) 631, 957, 1066, 1106, 1279, 1374
CaiI CAGNNNCTG 1 cut(s) 1311
CciI TCATGA 1 cut(s) 1384
Cfr13I GGNCC 4 cut(s) 23, 302, 759, 1171
Cfr9I CCCGGG 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 5 cut(s) 65, 703, 742, 932, 1333
CviAII CATG 6 cut(s) 188, 929, 982, 1237, 1385, 1402
CviQI GTAC 5 cut(s) 65, 703, 742, 932, 1333
DdeI CTNAG 4 cut(s) 204, 290, 790, 1040
DpnI GATC 4 cut(s) 566, 852, 1136, 1196
DpnII GATC 4 cut(s) 564, 850, 1134, 1194
DraI TTTAAA 2 cut(s) 535, 694
Eam1104I CTCTTC 2 cut(s) 522, 984
EarI CTCTTC 2 cut(s) 522, 984
EciI GGCGGA 1 cut(s) 794
Eco130I CCWWGG 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 23, 302
Eco57I CTGAAG 1 cut(s) 1398
Eco88I CYCGRG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 6 cut(s) 191, 932, 985, 1240, 1388, 1405
FaqI GGGAC 1 cut(s) 198
FatI CATG 6 cut(s) 187, 928, 981, 1236, 1384, 1401
FbaI TGATCA 1 cut(s) 1134
FblI GTMKAC 1 cut(s) 1421
Fnu4HI GCNGC 5 cut(s) 94, 233, 324, 960, 1208
FokI GGATG 3 cut(s) 191, 1073, 1124
Fsp4HI GCNGC 5 cut(s) 94, 233, 324, 960, 1208
FspBI CTAG 2 cut(s) 639, 1343
GluI GCNGC 5 cut(s) 94, 233, 324, 960, 1208
GsaI CCCAGC 1 cut(s) 1158
GsuI CTGGAG 1 cut(s) 882
HaeIII GGCC 3 cut(s) 688, 761, 1172
HapII CCGG 3 cut(s) 217, 1109, 1140
Hin1II CATG 6 cut(s) 191, 932, 985, 1240, 1388, 1405
HindIII AAGCTT 1 cut(s) 1370
HinfI GANTC 6 cut(s) 167, 200, 891, 976, 1240, 1301
HpaII CCGG 3 cut(s) 217, 1109, 1140
HphI GGTGA 4 cut(s) 344, 635, 745, 1129
Hpy166II GTNNAC 4 cut(s) 1104, 1247, 1333, 1422
Hpy188I TCNGA 4 cut(s) 160, 205, 582, 1215
Hpy188III TCNNGA 5 cut(s) 250, 568, 899, 1305, 1385
Hpy8I GTNNAC 4 cut(s) 1104, 1247, 1333, 1422
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 3 cut(s) 734, 979, 1162
HpyCH4III ACNGT 4 cut(s) 8, 212, 1129, 1330
HpyCH4IV ACGT 4 cut(s) 596, 674, 813, 1025
HpyCH4V TGCA 5 cut(s) 718, 827, 959, 1068, 1104
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 635
HpyF3I CTNAG 4 cut(s) 204, 290, 790, 1040
HpySE526I ACGT 4 cut(s) 596, 674, 813, 1025
Hsp92II CATG 6 cut(s) 191, 932, 985, 1240, 1388, 1405
Ksp22I TGATCA 1 cut(s) 1134
Kzo9I GATC 4 cut(s) 564, 850, 1134, 1194
LmnI GCTCC 3 cut(s) 240, 1159, 1286
Lsp1109I GCAGC 4 cut(s) 219, 335, 971, 1219
LweI GCATC 1 cut(s) 1051
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 2 cut(s) 639, 1343
MaeII ACGT 4 cut(s) 596, 674, 813, 1025
MaeIII GTNAC 4 cut(s) 77, 785, 1121, 1313
MalI GATC 4 cut(s) 566, 852, 1136, 1196
MboI GATC 4 cut(s) 564, 850, 1134, 1194
MhlI GDGCHC 3 cut(s) 1106, 1283, 1290
MluCI AATT 5 cut(s) 42, 161, 469, 711, 1321
MmeI TCCRAC 2 cut(s) 605, 828
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 8 cut(s) 74, 282, 500, 534, 678, 693, 966, 1462
MslI CAYNNNNRTG 1 cut(s) 1130
MspI CCGG 3 cut(s) 217, 1109, 1140
MspR9I CCNGG 4 cut(s) 217, 218, 306, 1141
Mva1269I GAATGC 2 cut(s) 259, 718
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 2 cut(s) 93, 272
MwoI GCNNNNNNNGC 2 cut(s) 93, 635
NciI CCSGG 3 cut(s) 217, 218, 1141
NdeII GATC 4 cut(s) 564, 850, 1134, 1194
NlaIII CATG 6 cut(s) 191, 932, 985, 1240, 1388, 1405
NmuCI GTSAC 2 cut(s) 77, 785
NspV TTCGAA 1 cut(s) 37
PagI TCATGA 1 cut(s) 1384
PctI GAATGC 2 cut(s) 259, 718
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 6 cut(s) 167, 200, 891, 976, 1240, 1301
PkrI GCNGC 5 cut(s) 95, 234, 325, 961, 1209
PsiI TTATAA 1 cut(s) 810
Psp1406I AACGTT 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 1 cut(s) 304
PspPI GGNCC 4 cut(s) 23, 302, 759, 1171
PstNI CAGNNNCTG 1 cut(s) 1311
RsaI GTAC 5 cut(s) 66, 704, 743, 933, 1334
RsaNI GTAC 5 cut(s) 65, 703, 742, 932, 1333
RseI CAYNNNNRTG 1 cut(s) 1130
SaqAI TTAA 8 cut(s) 74, 282, 500, 534, 678, 693, 966, 1462
SatI GCNGC 5 cut(s) 94, 233, 324, 960, 1208
Sau3AI GATC 4 cut(s) 564, 850, 1134, 1194
Sau96I GGNCC 4 cut(s) 23, 302, 759, 1171
ScrFI CCNGG 4 cut(s) 217, 218, 306, 1141
SduI GDGCHC 3 cut(s) 1106, 1283, 1290
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 1 cut(s) 1051
SfcI CTRYAG 2 cut(s) 585, 682
SfuI TTCGAA 1 cut(s) 37
SinI GGWCC 2 cut(s) 23, 302
SmaI CCCGGG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 1130
SmlI CTYRAG 2 cut(s) 1163, 1289
SmoI CTYRAG 2 cut(s) 1163, 1289
Sse9I AATT 5 cut(s) 42, 161, 469, 711, 1321
SsiI CCGC 5 cut(s) 93, 270, 418, 779, 953
SspI AATATT 2 cut(s) 919, 1073
SspMI CTAG 2 cut(s) 639, 1343
StyD4I CCNGG 4 cut(s) 215, 216, 304, 1139
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 4 cut(s) 8, 212, 1129, 1330
TaiI ACGT 4 cut(s) 599, 677, 816, 1028
TaqI TCGA 3 cut(s) 37, 567, 668
TasI AATT 5 cut(s) 42, 161, 469, 711, 1321
TatI WGTACW 3 cut(s) 741, 931, 1332
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 6 cut(s) 167, 200, 891, 976, 1240, 1301
Tru1I TTAA 8 cut(s) 74, 282, 500, 534, 678, 693, 966, 1462
Tru9I TTAA 8 cut(s) 74, 282, 500, 534, 678, 693, 966, 1462
TscAI CASTG 2 cut(s) 1132, 1333
TseFI GTSAC 2 cut(s) 77, 785
TseI GCWGC 4 cut(s) 232, 323, 959, 1207
Tsp45I GTSAC 2 cut(s) 77, 785
TspDTI ATGAA 7 cut(s) 17, 521, 649, 896, 917, 998, 1401
TspGWI ACGGA 2 cut(s) 253, 1273
TspMI CCCGGG 1 cut(s) 216
TspRI CASTG 2 cut(s) 1132, 1333
VneI GTGCAC 1 cut(s) 1102
VpaK11BI GGWCC 2 cut(s) 23, 302
XapI RAATTY 3 cut(s) 42, 161, 1321
XmaI CCCGGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 1421
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 2 cut(s) 639, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.