Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Forward (+)

20860507 .. 20864287

Gene Structure 3781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTTCAAAGTCGGATGTGAATATAATAGAGACATCCTCAAAGGTTCATTTCTCAGGATTTCATCAAATGGATGGTTTAGCTTCAAATAGACCAGAGCAAATGGCTGAGGAAGAAGAACATGGTCAACCTTTTGTGATCGGAGTTGCTGGAGGTGCAGCATCCGGGAAAACAACTGTCTGTGATATGATTATGCAGCAACTGCATGATCAGAGAGCTGTTGTTGTAAATCAGGATTCTTTCTACCATAATGTAAATGAAGTGGAGCTTGTAAGAGTTCATGATTACAATTTTGACCATCCTGACGCTTTCGATACTGAGCAATTATTGTCTTCCATGGAGAAGTTAAGAAAAGGACAAGCAGTAGATATTCCTAATTATGACTTCAAAAGTTACAAGAACAATGTTTTTCCACCTAGAAGGGTGAATCCTTCTGACGTTATAATTCTGGAAGGTATACTCATTTTCCATGACCCTCGGGTGCGAGATTTGATGAACATGAAGATATTTGTAGACGCAGATGCCGATGTGCGTCTAGCGAGAAGGATAAAACGCGATACTGTTGAGAAGGGCAGAGATATTGCCACTGTTCTTGACCAGTACTCAAAGTTTGTGAAGCCAGCATTTGAGGATTTCATACTCCCAACAAAGAAATACGCAGATATAATAATTCCCCGAGGTGGTGATAACCATGTTGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGATACGTGGTATGCACACTCTAATCCGCGACTCTAAAACAACAAAGCATGACTTTATCTTCTACTCCGATCGATTGATACGTTTGGTCGTTGAACATGGCCTCGGACACCTTCCCTTTACAGAAAAGCAAGTGGTTACTCCAACAGGATCTGTGTATTCGGGTGTGGACTTCTGTAAGAAACTGTGTGGTGTCTCAGTTATCAGAAGCGGTGAGAGTATGGAGAACGCTCTTAGAGCATGCTGCAAAGGCATCAAAATTGGGAAGATTCTGATTCATAGAGAAGGCGACAATGGTCAACAGCTTATCTACGAGAAGCTACCCTCAGACATTTCAGAAAGGCATGTGCTTTTACTGGATCCAATCCTCGGGACAGGAAACTCGGCGGTGCAAGCGATAAGACTGCTCATAAGTAAAGGCGTGCCTGAATCCAACATCATATTTCTCAATTTGATATCTGCACCTGAAGGAGTAAATGTGGTGTGCAAAAAGTTCCCAAGGATAAAGATTGTGACTTCAGAGATAGAACTCGGTTTAAACGACGAGTTCCGAGTTGTTCCTGGTATGGGCGAGTTTGGAGACCGCTATTTTGGAACCGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

466

Amino Acids

52.44

Weight (kDa)

6.15

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	46 - 232	4.5e-46	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	262 - 463	4.4e-73	Uracil phosphoribosyltransferase
PRTase-CE	PF24390	283 - 448	7e-06	PRTase-CE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccI	GTMKAC	2 cut(s)	457, 513
AccII	CGCG	2 cut(s)	555, 822
AciI	CCGC	4 cut(s)	820, 1002, 1178, 1375
AclWI	GGATC	3 cut(s)	949, 1145, 1158
AcsI	RAATTY	1 cut(s)	756
AcuI	CTGAAG	2 cut(s)	1278, 1293
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	3 cut(s)	680, 1160, 1358
AgsI	TTSAA	5 cut(s)	9, 87, 388, 782, 887
AjnI	CCWGG	1 cut(s)	1351
AluBI	AGCT	6 cut(s)	83, 218, 268, 733, 1096, 1111
AluI	AGCT	6 cut(s)	83, 218, 268, 733, 1096, 1111
Alw26I	GTCTC	3 cut(s)	26, 991, 1365
AlwI	GGATC	3 cut(s)	949, 1145, 1158
AlwNI	CAGNNNCTG	2 cut(s)	202, 944
Ama87I	CYCGRG	3 cut(s)	477, 675, 1160
AoxI	GGCC	1 cut(s)	892
ApeKI	GCWGC	3 cut(s)	158, 196, 1035
ApoI	RAATTY	1 cut(s)	756
ArsI	GACNNNNNNTTYG	2 cut(s)	1364, 1396
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	436, 695, 1016
AvaI	CYCGRG	3 cut(s)	477, 675, 1160
BamHI	GGATCC	1 cut(s)	1150
BbsI	GAAGAC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	170, 208, 1022
BccI	CCATC	2 cut(s)	68, 306
BcgI	CGANNNNNNTGC	2 cut(s)	1177, 1211
BciT130I	CCWGG	1 cut(s)	1353
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	26, 991, 1365
BfaI	CTAG	2 cut(s)	417, 536
BisI	GCNGC	3 cut(s)	159, 197, 1036
BlsI	GCNGC	3 cut(s)	160, 198, 1037
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	2 cut(s)	166, 1353
BmeT110I	CYCGRG	3 cut(s)	477, 675, 1160
BmiI	GGNNCC	2 cut(s)	1152, 1387
BmrFI	CCNGG	2 cut(s)	166, 1353
BmsI	GCATC	3 cut(s)	170, 511, 1053
BoxI	GACNNNNGTC	1 cut(s)	1086
BpiI	GAAGAC	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	865
BsaAI	YACGTR	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	1365
BsaJI	CCNNGG	6 cut(s)	336, 476, 676, 895, 1159, 1289
BsaXI	ACNNNNNCTCC	2 cut(s)	1254, 1284
Bsc4I	CCNNNNNNNGG	3 cut(s)	680, 1160, 1358
Bse1I	ACTGG	2 cut(s)	598, 1152
BseBI	CCWGG	1 cut(s)	1353
BseCI	ATCGAT	1 cut(s)	865
BseDI	CCNNGG	6 cut(s)	336, 476, 676, 895, 1159, 1289
BseGI	GGATG	6 cut(s)	22, 35, 79, 161, 298, 720
BseLI	CCNNNNNNNGG	3 cut(s)	680, 1160, 1358
BseMII	CTCAG	5 cut(s)	69, 99, 309, 1002, 1131
BseNI	ACTGG	2 cut(s)	598, 1152
BseXI	GCAGC	3 cut(s)	170, 208, 1022
BsgI	GTGCAG	2 cut(s)	177, 1236
Bsh1236I	CGCG	2 cut(s)	555, 822
Bsh1285I	CGRYCG	1 cut(s)	865
BshFI	GGCC	1 cut(s)	894
BshVI	ATCGAT	1 cut(s)	865
BsiEI	CGRYCG	1 cut(s)	865
BsiHKCI	CYCGRG	3 cut(s)	477, 675, 1160
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	1177
BslI	CCNNNNNNNGG	3 cut(s)	680, 1160, 1358
BsmAI	GTCTC	3 cut(s)	26, 991, 1365
BsmFI	GGGAC	1 cut(s)	1177
BsnI	GGCC	1 cut(s)	894
Bso31I	GGTCTC	1 cut(s)	1365
BsoBI	CYCGRG	3 cut(s)	477, 675, 1160
Bsp143I	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	4 cut(s)	820, 1002, 1178, 1375
BspANI	GGCC	1 cut(s)	894
BspCNI	CTCAG	5 cut(s)	68, 100, 310, 1001, 1130
BspDI	ATCGAT	1 cut(s)	865
BspFNI	CGCG	2 cut(s)	555, 822
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	1152, 1387
BspPI	GGATC	3 cut(s)	949, 1145, 1158
BspTNI	GGTCTC	1 cut(s)	1365
BsrI	ACTGG	2 cut(s)	598, 1152
BssECI	CCNNGG	6 cut(s)	336, 476, 676, 895, 1159, 1289
BssMI	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
BssNAI	GTATAC	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	336, 1289
Bst1107I	GTATAC	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	1353
Bst4CI	ACNGT	4 cut(s)	178, 562, 589, 978
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	621, 1033, 1185, 1214
BstDEI	CTNAG	6 cut(s)	55, 108, 318, 988, 1025, 1117
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	6 cut(s)	22, 35, 79, 161, 298, 720
BstFNI	CGCG	2 cut(s)	555, 822
BstKTI	GATC	6 cut(s)	141, 211, 748, 865, 944, 1153
BstMAI	GTCTC	3 cut(s)	26, 991, 1365
BstMBI	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
BstMCI	CGRYCG	1 cut(s)	865
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 202, 1028, 1041, 1184
BstNI	CCWGG	1 cut(s)	1353
BstNSI	RCATGY	2 cut(s)	1035, 1139
BstPAI	GACNNNNGTC	1 cut(s)	1086
BstSCI	CCNGG	2 cut(s)	164, 1351
BstUI	CGCG	2 cut(s)	555, 822
BstV1I	GCAGC	3 cut(s)	170, 208, 1022
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	941, 1150
BstYI	RGATCY	2 cut(s)	941, 1150
BstZ17I	GTATAC	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	865
BsuRI	GGCC	1 cut(s)	894
BsuTUI	ATCGAT	1 cut(s)	865
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	6 cut(s)	22, 35, 79, 161, 298, 720
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	4 cut(s)	621, 1033, 1185, 1214
CaiI	CAGNNNCTG	2 cut(s)	202, 944
CciI	TCATGA	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	865
CseI	GACGC	3 cut(s)	314, 521, 524
Csp6I	GTAC	1 cut(s)	601
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	6 cut(s)	55, 108, 318, 988, 1025, 1117
DpnI	GATC	6 cut(s)	140, 210, 747, 864, 943, 1152
DpnII	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
DraI	TTTAAA	1 cut(s)	1329
Eco130I	CCWWGG	2 cut(s)	336, 1289
Eco31I	GGTCTC	1 cut(s)	1365
Eco32I	GATATC	1 cut(s)	1248
Eco57I	CTGAAG	2 cut(s)	1278, 1293
Eco88I	CYCGRG	3 cut(s)	477, 675, 1160
EcoRII	CCWGG	1 cut(s)	1351
EcoRV	GATATC	1 cut(s)	1248
EcoT14I	CCWWGG	2 cut(s)	336, 1289
ErhI	CCWWGG	2 cut(s)	336, 1289
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 830, 862
FaqI	GGGAC	1 cut(s)	1177
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	2 cut(s)	457, 513
Fnu4HI	GCNGC	3 cut(s)	159, 197, 1036
FokI	GGATG	6 cut(s)	22, 29, 86, 148, 285, 707
Fsp4HI	GCNGC	3 cut(s)	159, 197, 1036
FspBI	CTAG	2 cut(s)	417, 536
GluI	GCNGC	3 cut(s)	159, 197, 1036
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	894
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	3 cut(s)	314, 521, 524
HincII	GTYRAC	3 cut(s)	128, 740, 1091
HindII	GTYRAC	3 cut(s)	128, 740, 1091
HinfI	GANTC	6 cut(s)	236, 427, 824, 1060, 1066, 1220
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	436, 695, 1016
Hpy166II	GTNNAC	6 cut(s)	128, 458, 514, 740, 961, 1091
Hpy188III	TCNNGA	7 cut(s)	57, 233, 281, 302, 449, 593, 1162
Hpy8I	GTNNAC	6 cut(s)	128, 458, 514, 740, 961, 1091
Hpy99I	CGWCG	1 cut(s)	1337
HpyAV	CCTTC	8 cut(s)	414, 441, 446, 537, 562, 914, 1070, 1253
HpyCH4III	ACNGT	4 cut(s)	178, 562, 589, 978
HpyCH4IV	ACGT	3 cut(s)	438, 799, 874
HpyCH4V	TGCA	9 cut(s)	158, 196, 205, 715, 808, 1038, 1183, 1253, 1278
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 202, 1028, 1041, 1184
HpyF3I	CTNAG	6 cut(s)	55, 108, 318, 988, 1025, 1117
HpySE526I	ACGT	3 cut(s)	438, 799, 874
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	170, 208, 1022
LweI	GCATC	3 cut(s)	170, 511, 1053
MaeI	CTAG	2 cut(s)	417, 536
MaeII	ACGT	3 cut(s)	438, 799, 874
MaeIII	GTNAC	3 cut(s)	392, 928, 1303
MalI	GATC	6 cut(s)	140, 210, 747, 864, 943, 1152
MboI	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
MboII	GAAGA	6 cut(s)	125, 128, 324, 514, 844, 1069
MflI	RGATCY	2 cut(s)	941, 1150
MluCI	AATT	8 cut(s)	289, 323, 376, 444, 669, 756, 1050, 1240
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	2 cut(s)	959, 1248
MnlI	CCTC	9 cut(s)	49, 103, 146, 486, 622, 671, 905, 1126, 1169
MseI	TTAA	2 cut(s)	347, 1328
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	166, 1353
MssI	GTTTAAAC	1 cut(s)	1329
MvaI	CCWGG	1 cut(s)	1353
MvnI	CGCG	2 cut(s)	555, 822
MwoI	GCNNNNNNNGC	5 cut(s)	155, 202, 1028, 1041, 1184
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
NlaIV	GGNNCC	2 cut(s)	1152, 1387
NmeAIII	GCCGAG	1 cut(s)	1154
NmuCI	GTSAC	1 cut(s)	1303
NspI	RCATGY	2 cut(s)	1035, 1139
PaeI	GCATGC	1 cut(s)	1035
PagI	TCATGA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	3 cut(s)	522, 871, 1329
PfeI	GAWTC	5 cut(s)	236, 427, 1060, 1066, 1220
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	160, 198, 1037
Ple19I	CGATCG	1 cut(s)	865
PleI	GAGTC	1 cut(s)	818
PmeI	GTTTAAAC	1 cut(s)	1329
PpsI	GAGTC	1 cut(s)	818
Ppu21I	YACGTR	1 cut(s)	800
PshAI	GACNNNNGTC	1 cut(s)	1086
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	1351
PspGI	CCWGG	1 cut(s)	1351
PspN4I	GGNNCC	2 cut(s)	1152, 1387
PstNI	CAGNNNCTG	2 cut(s)	202, 944
PsuI	RGATCY	2 cut(s)	941, 1150
PvuI	CGATCG	1 cut(s)	865
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	347, 1328
SatI	GCNGC	3 cut(s)	159, 197, 1036
Sau3AI	GATC	6 cut(s)	138, 208, 745, 862, 941, 1150
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	2 cut(s)	166, 1353
SfaNI	GCATC	3 cut(s)	170, 511, 1053
SphI	GCATGC	1 cut(s)	1035
Sse9I	AATT	8 cut(s)	289, 323, 376, 444, 669, 756, 1050, 1240
SsiI	CCGC	4 cut(s)	820, 1002, 1178, 1375
SspMI	CTAG	2 cut(s)	417, 536
StyD4I	CCNGG	2 cut(s)	164, 1351
StyI	CCWWGG	2 cut(s)	336, 1289
TaaI	ACNGT	4 cut(s)	178, 562, 589, 978
TaiI	ACGT	3 cut(s)	441, 802, 877
TaqI	TCGA	2 cut(s)	312, 865
TaqII	GACCGA	1 cut(s)	725
TasI	AATT	8 cut(s)	289, 323, 376, 444, 669, 756, 1050, 1240
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	5 cut(s)	236, 427, 1060, 1066, 1220
Tru1I	TTAA	2 cut(s)	347, 1328
Tru9I	TTAA	2 cut(s)	347, 1328
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	1303
TseI	GCWGC	3 cut(s)	158, 196, 1035
Tsp45I	GTSAC	1 cut(s)	1303
TspDTI	ATGAA	8 cut(s)	38, 53, 269, 273, 509, 515, 625, 1058
TspRI	CASTG	1 cut(s)	592
XapI	RAATTY	1 cut(s)	756
XceI	RCATGY	2 cut(s)	1035, 1139
XmiI	GTMKAC	2 cut(s)	457, 513
XspI	CTAG	2 cut(s)	417, 536
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.