Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Forward (+)

61051990 .. 61053900

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0439200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGTAAGCAGCAGAGATACGTGCCTTACTTGGACCGAGTGCCGGAAGAACACGTCATGGATATCTCCGACGACGACGGCGACGACGACCCAGAGAGCCTCCTCCCCTACGAGACACGTGGCATCACCGGAAAGAAATGGCCCTCGTCGGAGAAGTGGGTCCACGCTATTCCTTGGGTTGTGCTCTTCTGCATCTTCGTCCTCTGGTGGTTCTCTTTCACAGTAAAAGTTGTGAGCATAGATGGAAGGATTGCTGCAATACGTGAAACTGATATACCACTCCTCAACAACACTCGAATTGGTATCGCATTCCTGGCAGCTGAGGCAATGTCACCATTCGCCTTGGCTCAGAATCTCTCAGTCAAAAATGTCACTGAAGCGCAGCTGGTGAGTAAGCCAACTCAGAATCTTGCAGCCAACAATGTTACTGAAATTCAATTGGTGAGTAAGCGAACTCAGAATCTCACAGCCCACAAGGTCACTAAACCTCAACTGGTGAGTAAGCGAACTCAGAATCTTACATCCCACAATGTCACTGAAATTCAACTGGTGCGGAAGCGAACTCGGAATCTCACGGACAATAATGTCACTGAAGCTCAACTGGTGAGTAAGCGAACTCAGAATCTCACAGCCAACAATGTCACTGGAGTTGAGGCCGTGAGTTCAGCTTCTCAGAATCTCAAAGAATGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

231

Amino Acids

26.03

Weight (kDa)

8.87

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	584
AciI	CCGC	1 cut(s)	553
AcsI	RAATTY	2 cut(s)	432, 540
AcuI	CTGAAG	2 cut(s)	396, 612
AcvI	CACGTG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	2 cut(s)	52, 116
AgsI	TTSAA	2 cut(s)	437, 545
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	320, 385, 596, 668
AluI	AGCT	4 cut(s)	320, 385, 596, 668
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	2 cut(s)	140, 654
ApeKI	GCWGC	5 cut(s)	10, 254, 317, 382, 413
ApoI	RAATTY	2 cut(s)	432, 540
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	34, 141, 160
AsuHPI	GGTGA	6 cut(s)	118, 324, 400, 454, 508, 616
AvaII	GGWCC	2 cut(s)	34, 160
BbrPI	CACGTG	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	22, 241, 329, 394, 425
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	94, 641
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	5 cut(s)	11, 255, 318, 383, 414
BlsI	GCNGC	5 cut(s)	12, 256, 319, 384, 415
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	34, 160
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	34, 141, 160
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	132, 201
BpmI	CTGGAG	1 cut(s)	666
Bpu10I	CCTNAGC	1 cut(s)	321
BsaAI	YACGTR	3 cut(s)	22, 119, 263
BsaJI	CCNNGG	2 cut(s)	173, 342
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	4 cut(s)	498, 552, 606, 649
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	173, 342
BseGI	GGATG	1 cut(s)	521
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	8 cut(s)	312, 362, 372, 416, 470, 524, 632, 686
BseNI	ACTGG	4 cut(s)	498, 552, 606, 649
BseRI	GAGGAG	2 cut(s)	92, 272
BseXI	GCAGC	5 cut(s)	22, 241, 329, 394, 425
BshFI	GGCC	2 cut(s)	142, 656
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	44, 129
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	142, 656
Bsp1286I	GDGCHC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	2 cut(s)	142, 656
BspCNI	CTCAG	8 cut(s)	313, 361, 371, 415, 469, 523, 631, 685
BspLI	GGNNCC	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	4 cut(s)	498, 552, 606, 649
BssECI	CCNNGG	2 cut(s)	173, 342
BssT1I	CCWWGG	2 cut(s)	173, 342
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	191
BstBAI	YACGTR	3 cut(s)	22, 119, 263
BstDEI	CTNAG	8 cut(s)	321, 348, 358, 402, 456, 510, 618, 672
BstF5I	GGATG	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 314, 323
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	5 cut(s)	22, 241, 329, 394, 425
BsuRI	GGCC	2 cut(s)	142, 656
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	521
BtsIMutI	CAGTG	5 cut(s)	372, 534, 588, 642, 691
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	34, 141, 160
CviAII	CATG	1 cut(s)	58
DdeI	CTNAG	8 cut(s)	321, 348, 358, 402, 456, 510, 618, 672
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	173, 342
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	34, 160
Eco57I	CTGAAG	2 cut(s)	396, 612
Eco72I	CACGTG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	173, 342
ErhI	CCWWGG	2 cut(s)	173, 342
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 239, 275
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	11, 255, 318, 383, 414
FokI	GGATG	1 cut(s)	508
Fsp4HI	GCNGC	5 cut(s)	11, 255, 318, 383, 414
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	5 cut(s)	11, 255, 318, 383, 414
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	142, 656
HapII	CCGG	2 cut(s)	44, 129
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	7 cut(s)	352, 406, 460, 514, 568, 622, 676
HpaII	CCGG	2 cut(s)	44, 129
HphI	GGTGA	6 cut(s)	118, 324, 400, 454, 508, 616
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	9 cut(s)	70, 151, 351, 405, 459, 513, 567, 621, 675
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	6 cut(s)	74, 77, 80, 86, 89, 151
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	4 cut(s)	21, 54, 118, 262
HpyCH4V	TGCA	3 cut(s)	192, 257, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 314, 323
HpyF3I	CTNAG	8 cut(s)	321, 348, 358, 402, 456, 510, 618, 672
HpySE526I	ACGT	4 cut(s)	21, 54, 118, 262
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	380
LguI	GCTCTTC	1 cut(s)	191
Lsp1109I	GCAGC	5 cut(s)	22, 241, 329, 394, 425
LweI	GCATC	2 cut(s)	132, 201
MaeII	ACGT	4 cut(s)	21, 54, 118, 262
MaeIII	GTNAC	8 cut(s)	330, 370, 424, 478, 532, 586, 640, 689
MboII	GAAGA	3 cut(s)	59, 178, 187
MfeI	CAATTG	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	297, 432, 437, 540
MmeI	TCCRAC	2 cut(s)	93, 129
MnlI	CCTC	8 cut(s)	110, 113, 154, 212, 293, 316, 498, 646
MspA1I	CMGCKG	2 cut(s)	320, 385
MspI	CCGG	2 cut(s)	44, 129
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	10, 314, 323
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	7 cut(s)	330, 370, 478, 532, 586, 640, 689
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 81, 84
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	7 cut(s)	352, 406, 460, 514, 568, 622, 676
PkrI	GCNGC	5 cut(s)	12, 256, 319, 384, 415
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
Ppu21I	YACGTR	3 cut(s)	22, 119, 263
Psp6I	CCWGG	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	3 cut(s)	34, 141, 160
PvuII	CAGCTG	2 cut(s)	320, 385
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	5 cut(s)	11, 255, 318, 383, 414
Sau96I	GGNCC	3 cut(s)	34, 141, 160
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	132, 201
SinI	GGWCC	2 cut(s)	34, 160
Sse9I	AATT	4 cut(s)	297, 432, 437, 540
SsiI	CCGC	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	173, 342
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	4 cut(s)	24, 57, 121, 265
TaqI	TCGA	1 cut(s)	295
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	297, 432, 437, 540
TfiI	GAWTC	7 cut(s)	352, 406, 460, 514, 568, 622, 676
TscAI	CASTG	4 cut(s)	379, 541, 595, 649
TseFI	GTSAC	7 cut(s)	330, 370, 478, 532, 586, 640, 689
TseI	GCWGC	5 cut(s)	10, 254, 317, 382, 413
Tsp45I	GTSAC	7 cut(s)	330, 370, 478, 532, 586, 640, 689
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	4 cut(s)	379, 541, 595, 649
VpaK11BI	GGWCC	2 cut(s)	34, 160
XapI	RAATTY	2 cut(s)	432, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.