Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Reverse (-)

35208393 .. 35213686

Gene Structure 5294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCTCATGGGTTCAAATTCAGTTGTGGATATGATAGAGGCCTCCTCAGGGGTTCATTTTTCTGGATTTCACATGGATGGCTTAGAGCAAAGACTGAAGATTGAGCCACCAACAACCTCAAATGAAAACATGCATAAGCAGCCTTTTGTTATTGGGGTTGCTGGTGGGGCAGCTTCTGGTAAGACAACGGTTTGTGACATGATTATACAGCAGCTTCACGATCAGCGTGTTGTTCTTGTTAACCAGGACTCGTTTTATCATAATCTGACCAGCGAGGAACTTAAACGGGTTCATGAATACAACTTTGACCATCCTGATGCTTTTGACACGGAGAAACTATTATCTTATATGGACAAGTTGAAGCATGGGCAAGCAGTAGATATTCCAAACTATGATTTCAAAAGTTACAAAAATAGTGTGTTTCCAGCGAGAAGGGTAAACCCTTCAGATGTCATAATTTTGGAAGGCATTCTTGTTTTCCATGATCCTCGTGTCCGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTGCGGTTGGCTAGGAGGATAAGGCGTGATACGGTTGAGAAGGGAAGGGACATCGGAACAGTTCTTGATCAGTATTCACAATTTGTAAAGCCTGCTTTTGATGATTTTATCCTTCCTACAAAGAAGTATGCTGATATCATTATACCTCGGGGTGGAGATAATCACATAGCCGTTGATTTGATTGTACAACATATCCGCACTAAGCTTGGTCAACATGATCTCTGTAAAATATATCCTAATTTATATGTCATTCAGTCAACCTTTCAGATTCGGGGTATGCATACCCTCATACGTGATTCACAAACAACAAAGCATGATTTTGTTTTCTATTCTGATCGATTAATTCGTTTGGTTGTTGAGCATGGCCTGGGACACCTACCTTTTACTGAAAAGCAGGTCATCACTCCAACTGGGTCTGTGTATATTGGTGTGGATTTTTGTAAGAGGTTATGCGGTGTATCTGTCATTAGGAGTGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGCAAGATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATTTATGAAAAGCTACCCAACGACATTTCAGAGAGGCATGTATTGCTGTTGGATCCTATCTTGGGAACAGGGAATTCGGCCGTTCAAGCTATTTCTCTACTTTTAAAGAAGGGTGTACCAGAGTCTAACATCATATTTCTCAACCTCATATCTGCACCTCAAGGTGTGCATGTGGTCTGCAAACGCTTCCCCAGAATAAAGATTGTGACATCTGAGATCGAAACTGGTCTGAATGAAGACTTTCGTGTTGTGCCTGGCATGGGGGAATTTGGAGATAGATATTTTGGAACCGACGATGATGATGAAGGGGTTCCTCCATCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

479

Amino Acids

53.85

Weight (kDa)

6.35

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	50 - 236	1.1e-47	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	266 - 467	2e-73	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	925
AciI	CCGC	3 cut(s)	544, 736, 993
AclWI	GGATC	3 cut(s)	479, 1157, 1170
AcoI	YGGCCR	1 cut(s)	1188
AcsI	RAATTY	3 cut(s)	16, 1183, 1376
AcuI	CTGAAG	2 cut(s)	116, 429
AfaI	GTAC	2 cut(s)	726, 1227
AfiI	CCNNNNNNNGG	4 cut(s)	48, 692, 1172, 1370
AgsI	TTSAA	4 cut(s)	15, 361, 400, 1196
AjnI	CCWGG	3 cut(s)	243, 906, 1363
AluBI	AGCT	6 cut(s)	173, 214, 745, 1108, 1123, 1199
AluI	AGCT	6 cut(s)	173, 214, 745, 1108, 1123, 1199
AlwI	GGATC	3 cut(s)	479, 1157, 1170
AlwNI	CAGNNNCTG	2 cut(s)	176, 536
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	3 cut(s)	39, 904, 1188
ApeKI	GCWGC	4 cut(s)	139, 170, 211, 1105
ApoI	RAATTY	3 cut(s)	16, 1183, 1376
AseI	ATTAAT	1 cut(s)	881
Asp700I	GAANNNNTTC	3 cut(s)	468, 1350, 1419
AsuHPI	GGTGA	2 cut(s)	1028, 1103
AvaI	CYCGRG	1 cut(s)	687
AxyI	CCTNAGG	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	1162
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	1353
BbvI	GCAGC	4 cut(s)	151, 182, 223, 1117
BccI	CCATC	3 cut(s)	71, 318, 1435
BceAI	ACGGC	2 cut(s)	695, 1175
BciT130I	CCWGG	3 cut(s)	245, 908, 1365
BclI	TGATCA	1 cut(s)	607
BfaI	CTAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	925
BisI	GCNGC	4 cut(s)	140, 171, 212, 1106
BlsI	GCNGC	4 cut(s)	141, 172, 213, 1107
Bme1390I	CCNGG	3 cut(s)	245, 908, 1365
BmeT110I	CYCGRG	1 cut(s)	687
BmiI	GGNNCC	3 cut(s)	1164, 1399, 1422
BmrFI	CCNGG	3 cut(s)	245, 908, 1365
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	2 cut(s)	307, 523
BmuI	ACTGGG	1 cut(s)	960
BoxI	GACNNNNGTC	1 cut(s)	1098
BpiI	GAAGAC	1 cut(s)	1353
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	1 cut(s)	1254
Bsa29I	ATCGAT	1 cut(s)	877
BsaAI	YACGTR	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	686, 907
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 692, 1172, 1370
Bse1I	ACTGG	2 cut(s)	955, 1339
Bse21I	CCTNAGG	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	245, 908, 1365
BseCI	ATCGAT	1 cut(s)	877
BseDI	CCNNGG	2 cut(s)	686, 907
BseGI	GGATG	2 cut(s)	82, 310
BseLI	CCNNNNNNNGG	4 cut(s)	48, 692, 1172, 1370
BseMII	CTCAG	2 cut(s)	60, 1314
BseNI	ACTGG	2 cut(s)	955, 1339
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	1188
BseXI	GCAGC	4 cut(s)	151, 182, 223, 1117
BsgI	GTGCAG	1 cut(s)	1248
Bsh1285I	CGRYCG	1 cut(s)	1191
BshFI	GGCC	3 cut(s)	41, 906, 1190
BshVI	ATCGAT	1 cut(s)	877
BsiEI	CGRYCG	1 cut(s)	1191
BsiHKCI	CYCGRG	1 cut(s)	687
BslFI	GGGAC	2 cut(s)	602, 924
BslI	CCNNNNNNNGG	4 cut(s)	48, 692, 1172, 1370
BsmFI	GGGAC	2 cut(s)	602, 924
BsmI	GAATGC	2 cut(s)	468, 1036
BsnI	GGCC	3 cut(s)	41, 906, 1190
BsoBI	CYCGRG	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
BspACI	CCGC	3 cut(s)	544, 736, 993
BspANI	GGCC	3 cut(s)	41, 906, 1190
BspCNI	CTCAG	2 cut(s)	59, 1315
BspDI	ATCGAT	1 cut(s)	877
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	1164, 1399, 1422
BspMI	ACCTGC	1 cut(s)	925
BspPI	GGATC	3 cut(s)	479, 1157, 1170
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	2 cut(s)	955, 1339
BssECI	CCNNGG	2 cut(s)	686, 907
BssMI	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	3 cut(s)	245, 908, 1365
Bst4CI	ACNGT	3 cut(s)	190, 574, 601
BstAPI	GCANNNNNTGC	1 cut(s)	1153
BstAUI	TGTACA	1 cut(s)	724
BstBAI	YACGTR	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	372, 633, 1041
BstDEI	CTNAG	4 cut(s)	46, 82, 741, 1323
BstF5I	GGATG	2 cut(s)	82, 310
BstKTI	GATC	7 cut(s)	223, 487, 610, 760, 877, 1165, 1329
BstMBI	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
BstMCI	CGRYCG	1 cut(s)	1191
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 167, 1040, 1153, 1196
BstNI	CCWGG	3 cut(s)	245, 908, 1365
BstNSI	RCATGY	4 cut(s)	133, 1047, 1151, 1283
BstPAI	GACNNNNGTC	1 cut(s)	1098
BstSCI	CCNGG	3 cut(s)	243, 906, 1363
BstV1I	GCAGC	4 cut(s)	151, 182, 223, 1117
BstV2I	GAAGAC	1 cut(s)	1353
BstX2I	RGATCY	1 cut(s)	1162
BstYI	RGATCY	1 cut(s)	1162
BstZI	CGGCCG	1 cut(s)	1188
Bsu15I	ATCGAT	1 cut(s)	877
Bsu36I	CCTNAGG	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	41, 906, 1190
BsuTUI	ATCGAT	1 cut(s)	877
BtsCI	GGATG	2 cut(s)	82, 310
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	3 cut(s)	372, 633, 1041
CaiI	CAGNNNCTG	2 cut(s)	176, 536
CciI	TCATGA	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	877
Csp6I	GTAC	2 cut(s)	725, 1226
CviQI	GTAC	2 cut(s)	725, 1226
DdeI	CTNAG	4 cut(s)	46, 82, 741, 1323
DpnI	GATC	7 cut(s)	222, 486, 609, 759, 876, 1164, 1328
DpnII	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
DraI	TTTAAA	1 cut(s)	1215
EaeI	YGGCCR	1 cut(s)	1188
EagI	CGGCCG	1 cut(s)	1188
EclXI	CGGCCG	1 cut(s)	1188
Eco147I	AGGCCT	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	1188
Eco57I	CTGAAG	2 cut(s)	116, 429
Eco81I	CCTNAGG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	1183
EcoRII	CCWGG	3 cut(s)	243, 906, 1363
EcoRV	GATATC	1 cut(s)	676
EcoT22I	ATGCAT	2 cut(s)	135, 822
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	602, 924
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	140, 171, 212, 1106
FokI	GGATG	2 cut(s)	89, 297
Fsp4HI	GCNGC	4 cut(s)	140, 171, 212, 1106
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	4 cut(s)	140, 171, 212, 1106
HaeIII	GGCC	3 cut(s)	41, 906, 1190
HincII	GTYRAC	3 cut(s)	241, 752, 798
HindII	GTYRAC	3 cut(s)	241, 752, 798
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	5 cut(s)	248, 808, 836, 1072, 1232
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	1028, 1103
Hpy166II	GTNNAC	5 cut(s)	241, 439, 752, 798, 1226
Hpy188I	TCNGA	9 cut(s)	267, 448, 497, 596, 807, 874, 1141, 1324, 1341
Hpy188III	TCNNGA	6 cut(s)	63, 218, 293, 314, 605, 1060
Hpy8I	GTNNAC	5 cut(s)	241, 439, 752, 798, 1226
Hpy99I	CGWCG	1 cut(s)	1406
HpyAV	CCTTC	9 cut(s)	426, 453, 458, 574, 579, 662, 1082, 1213, 1409
HpyCH4III	ACNGT	3 cut(s)	190, 574, 601
HpyCH4IV	ACGT	1 cut(s)	832
HpyCH4V	TGCA	5 cut(s)	133, 820, 1265, 1279, 1290
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 167, 1040, 1153, 1196
HpyF3I	CTNAG	4 cut(s)	46, 82, 741, 1323
HpySE526I	ACGT	1 cut(s)	832
Ksp22I	TGATCA	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
Lsp1109I	GCAGC	4 cut(s)	151, 182, 223, 1117
LweI	GCATC	2 cut(s)	307, 523
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	832
MaeIII	GTNAC	4 cut(s)	194, 404, 1091, 1315
MalI	GATC	7 cut(s)	222, 486, 609, 759, 876, 1164, 1328
MboI	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
MboII	GAAGA	3 cut(s)	109, 526, 1358
MflI	RGATCY	1 cut(s)	1162
MluCI	AATT	8 cut(s)	16, 456, 620, 778, 882, 1110, 1183, 1376
MlyI	GAGTC	2 cut(s)	242, 1241
MmeI	TCCRAC	2 cut(s)	971, 1140
Mph1103I	ATGCAT	2 cut(s)	135, 822
MroXI	GAANNNNTTC	3 cut(s)	468, 1350, 1419
MseI	TTAA	4 cut(s)	240, 282, 881, 1214
MslI	CAYNNNNRTG	2 cut(s)	75, 315
MspR9I	CCNGG	3 cut(s)	245, 908, 1365
Mva1269I	GAATGC	2 cut(s)	468, 1036
MvaI	CCWGG	3 cut(s)	245, 908, 1365
MwoI	GCNNNNNNNGC	5 cut(s)	139, 167, 1040, 1153, 1196
NdeII	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
NlaIV	GGNNCC	3 cut(s)	1164, 1399, 1422
NmuCI	GTSAC	3 cut(s)	194, 1091, 1315
NsiI	ATGCAT	2 cut(s)	135, 822
NspI	RCATGY	4 cut(s)	133, 1047, 1151, 1283
PagI	TCATGA	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	883
PctI	GAATGC	2 cut(s)	468, 1036
PdmI	GAANNNNTTC	3 cut(s)	468, 1350, 1419
PfeI	GAWTC	3 cut(s)	808, 836, 1072
PkrI	GCNGC	4 cut(s)	141, 172, 213, 1107
PleI	GAGTC	2 cut(s)	242, 1240
PpsI	GAGTC	2 cut(s)	242, 1240
Ppu21I	YACGTR	1 cut(s)	833
PshAI	GACNNNNGTC	1 cut(s)	1098
PshBI	ATTAAT	1 cut(s)	881
Psp6I	CCWGG	3 cut(s)	243, 906, 1363
PspGI	CCWGG	3 cut(s)	243, 906, 1363
PspN4I	GGNNCC	3 cut(s)	1164, 1399, 1422
PstNI	CAGNNNCTG	2 cut(s)	176, 536
PsuI	RGATCY	1 cut(s)	1162
RsaI	GTAC	2 cut(s)	726, 1227
RsaNI	GTAC	2 cut(s)	725, 1226
RseI	CAYNNNNRTG	2 cut(s)	75, 315
SaqAI	TTAA	4 cut(s)	240, 282, 881, 1214
SatI	GCNGC	4 cut(s)	140, 171, 212, 1106
Sau3AI	GATC	7 cut(s)	220, 484, 607, 757, 874, 1162, 1326
SchI	GAGTC	2 cut(s)	242, 1241
ScrFI	CCNGG	3 cut(s)	245, 908, 1365
SfaNI	GCATC	2 cut(s)	307, 523
SmiMI	CAYNNNNRTG	2 cut(s)	75, 315
SmlI	CTYRAG	1 cut(s)	1269
SmoI	CTYRAG	1 cut(s)	1269
Sse9I	AATT	8 cut(s)	16, 456, 620, 778, 882, 1110, 1183, 1376
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	3 cut(s)	544, 736, 993
SspMI	CTAG	1 cut(s)	552
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	243, 906, 1363
TaaI	ACNGT	3 cut(s)	190, 574, 601
TaiI	ACGT	1 cut(s)	835
TaqI	TCGA	2 cut(s)	877, 1329
TasI	AATT	8 cut(s)	16, 456, 620, 778, 882, 1110, 1183, 1376
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	3 cut(s)	808, 836, 1072
Tru1I	TTAA	4 cut(s)	240, 282, 881, 1214
Tru9I	TTAA	4 cut(s)	240, 282, 881, 1214
TseFI	GTSAC	3 cut(s)	194, 1091, 1315
TseI	GCWGC	4 cut(s)	139, 170, 211, 1105
Tsp45I	GTSAC	3 cut(s)	194, 1091, 1315
TspGWI	ACGGA	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	881
XapI	RAATTY	3 cut(s)	16, 1183, 1376
XceI	RCATGY	4 cut(s)	133, 1047, 1151, 1283
XmnI	GAANNNNTTC	3 cut(s)	468, 1350, 1419
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	2 cut(s)	135, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.