Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Reverse (-)

75598064 .. 75602927

Gene Structure 4864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG541100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGCTTCGTGTTTGCAAGGAGATTACTCTATTTCATTTTGCTTTGCTAGCTTCGTCTTGTTGTTGTTGTTGTTGTATGATGCAAGTGATACATGGAATGGAGAGTGTCATTGTGGAAACGATGAAGCTGTCTATGCTTATGGGTTCAAATTCAGTTGTGGATATGATAGAGGCCTCCTCGGGGGTTCATTTTTCTGGATTTCACATGGATGGTTTGCACCAAAGACTGAAGATTGAGCAACCGACAACCTCAGCAAATGAAAACATGCATAAGCAGCCTTTTGTTATTGGGGTTGCTGGTGGGGCAGCTTCTGGTAAGACTACGGTTTGTGACATGATTATACAGCAGCTTCATGATCAGCGTGTTGTTCTTGTTAACCAGGACTCGTTTTATCATAATCTGACCAGCGAGGAACTTAAACGGGTTCATGAATACAACTTTGACCATCCTGATGCTTTCGACACAGAGAAACTATTATCTTATATGGACAAATTGAAGCATGGGCAAGCAGTAGATATTCCAAACTATGATTTCAAAAGTTACAAAAATAATGTGTTTCCAGCTAGAAGGGTAAACCCTTCGGATGTCATAATTTTGGAAGGCATTCTTGTTTTCCATGATCCTCGTGTCCGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTGCGGTTGGCTAGGAGGATAAGGCGTGATACAGTTGAGAAGGGAAGGGATATTGGTACAGTTCTTGATCAGTATTCACAATTTGTAAAGCCTGCTTTTGATGATTTTATTCTTCCTACAAAGAAGTATGCCGATATCATCATCCCTCGTGGTGGAGATAATCACATAGCTGTTGATTTGATTGTACAACATATCCGCACTAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCTAACTTATATGTCATTCATTCAACCTTTCAGATACGGGGTATGCATACCCTCATACGTGATTCTCAAACAACAAAGCATGATTTTGTTTTCTATTCCGACCGATTAATTCGTTTGGTTGTTGAGCATGGCCTGGGACACCTACCTTTTACTGAAAAGCAGGTCATCACTCCAACTGGGTCTGTGTATATTGGTGTGGATTTTTGTAAGAGGTTATGCGGTGTATCTGTCATTAGGAGTGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGCAAGATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATTTATGAAAAGCTACCCAACGACATTTCAGAGAGGCATGTATTGCTGTTGGATCCTATCTTGGGAACAGGTAATTCGGCTGTTCAAGCTATTTCTCTACTTCTAAAGAAGGGTGTACCAGAGTCCAACATCATATTTCTCAATCTCATATCTGCACCTCAAGGTGTGCATGTGGTCTGCAAACGCTTCCCCAGAATAAAGATTGTGACATCTGAGATTGAAACTGGTCTGAATGAAGACTTTCGTGTCGTACCTGGCATGGGTGAGTTTGGGGATAGATATTTTGGAACTGATGACGATGATCAAGAAGGGGTGCCTCCATCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

524

Amino Acids

59.05

Weight (kDa)

6.54

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	95 - 281	9.9e-48	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	311 - 512	2.6e-73	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1490
Acc36I	ACCTGC	1 cut(s)	1060
AccB1I	GGYRCC	1 cut(s)	1558
AciI	CCGC	3 cut(s)	679, 871, 1128
AclWI	GGATC	3 cut(s)	614, 1292, 1305
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	4 cut(s)	733, 861, 1362, 1497
AfiI	CCNNNNNNNGG	4 cut(s)	180, 827, 1307, 1505
AgsI	TTSAA	6 cut(s)	147, 496, 535, 933, 1331, 1466
AjnI	CCWGG	3 cut(s)	378, 1041, 1498
AlwI	GGATC	3 cut(s)	614, 1292, 1305
AlwNI	CAGNNNCTG	2 cut(s)	311, 671
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	2 cut(s)	171, 1039
ApeKI	GCWGC	4 cut(s)	274, 305, 346, 1240
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	1016
Asp700I	GAANNNNTTC	2 cut(s)	603, 1485
AsuHPI	GGTGA	3 cut(s)	1163, 1238, 1520
AsuNHI	GCTAGC	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	1297
BanI	GGYRCC	1 cut(s)	1558
BauI	CACGAG	2 cut(s)	624, 822
BbsI	GAAGAC	1 cut(s)	1488
BbvCI	CCTCAGC	1 cut(s)	250
BbvI	GCAGC	4 cut(s)	286, 317, 358, 1252
BccI	CCATC	3 cut(s)	203, 453, 1573
BciT130I	CCWGG	3 cut(s)	380, 1043, 1500
BclI	TGATCA	3 cut(s)	355, 742, 1546
BfaI	CTAG	3 cut(s)	47, 564, 687
BfuAI	ACCTGC	1 cut(s)	1060
BisI	GCNGC	4 cut(s)	275, 306, 347, 1241
BlsI	GCNGC	4 cut(s)	276, 307, 348, 1242
Bme1390I	CCNGG	3 cut(s)	380, 1043, 1500
BmeT110I	CYCGRG	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	1299, 1560
BmrFI	CCNGG	3 cut(s)	380, 1043, 1500
BmrI	ACTGGG	1 cut(s)	1095
BmsI	GCATC	3 cut(s)	69, 442, 658
BmtI	GCTAGC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	1095
BoxI	GACNNNNGTC	1 cut(s)	1233
BpiI	GAAGAC	1 cut(s)	1488
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bpu10I	CCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	1389
BsaAI	YACGTR	1 cut(s)	968
BsaJI	CCNNGG	2 cut(s)	177, 1042
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 827, 1307, 1505
Bse1I	ACTGG	2 cut(s)	1090, 1474
BseBI	CCWGG	3 cut(s)	380, 1043, 1500
BseDI	CCNNGG	2 cut(s)	177, 1042
BseGI	GGATG	4 cut(s)	214, 445, 589, 816
BseLI	CCNNNNNNNGG	4 cut(s)	180, 827, 1307, 1505
BseMII	CTCAG	2 cut(s)	264, 1449
BseNI	ACTGG	2 cut(s)	1090, 1474
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	4 cut(s)	286, 317, 358, 1252
BsgI	GTGCAG	1 cut(s)	1383
Bsh1285I	CGRYCG	1 cut(s)	1012
BshFI	GGCC	2 cut(s)	173, 1041
BshNI	GGYRCC	1 cut(s)	1558
BsiEI	CGRYCG	1 cut(s)	1012
BsiHKCI	CYCGRG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	4 cut(s)	180, 827, 1307, 1505
BsmFI	GGGAC	1 cut(s)	1059
BsmI	GAATGC	2 cut(s)	603, 1171
BsnI	GGCC	2 cut(s)	173, 1041
BsoBI	CYCGRG	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	5 cut(s)	355, 619, 742, 1297, 1546
BspACI	CCGC	3 cut(s)	679, 871, 1128
BspANI	GGCC	2 cut(s)	173, 1041
BspCNI	CTCAG	2 cut(s)	263, 1450
BspHI	TCATGA	2 cut(s)	352, 427
BspLI	GGNNCC	2 cut(s)	1299, 1560
BspMI	ACCTGC	1 cut(s)	1060
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	3 cut(s)	614, 1292, 1305
BspT107I	GGYRCC	1 cut(s)	1558
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	2 cut(s)	1090, 1474
BssECI	CCNNGG	2 cut(s)	177, 1042
BssMI	GATC	5 cut(s)	355, 619, 742, 1297, 1546
BssSI	CACGAG	2 cut(s)	624, 822
Bst2BI	CACGAG	2 cut(s)	624, 822
Bst2UI	CCWGG	3 cut(s)	380, 1043, 1500
Bst4CI	ACNGT	3 cut(s)	325, 709, 736
BstAPI	GCANNNNNTGC	1 cut(s)	1288
BstAUI	TGTACA	1 cut(s)	859
BstBAI	YACGTR	1 cut(s)	968
BstC8I	GCNNGC	4 cut(s)	48, 507, 768, 1176
BstDEI	CTNAG	3 cut(s)	250, 876, 1458
BstF5I	GGATG	4 cut(s)	214, 445, 589, 816
BstKTI	GATC	5 cut(s)	358, 622, 745, 1300, 1549
BstMBI	GATC	5 cut(s)	355, 619, 742, 1297, 1546
BstMCI	CGRYCG	1 cut(s)	1012
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 133, 274, 302, 886, 1175, 1288, 1331
BstNI	CCWGG	3 cut(s)	380, 1043, 1500
BstNSI	RCATGY	4 cut(s)	268, 1182, 1286, 1418
BstPAI	GACNNNNGTC	1 cut(s)	1233
BstSCI	CCNGG	3 cut(s)	378, 1041, 1498
BstV1I	GCAGC	4 cut(s)	286, 317, 358, 1252
BstV2I	GAAGAC	1 cut(s)	1488
BstX2I	RGATCY	1 cut(s)	1297
BstYI	RGATCY	1 cut(s)	1297
BsuRI	GGCC	2 cut(s)	173, 1041
BtsCI	GGATG	4 cut(s)	214, 445, 589, 816
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	4 cut(s)	48, 507, 768, 1176
CaiI	CAGNNNCTG	2 cut(s)	311, 671
CciI	TCATGA	2 cut(s)	352, 427
Csp6I	GTAC	4 cut(s)	732, 860, 1361, 1496
CviQI	GTAC	4 cut(s)	732, 860, 1361, 1496
DdeI	CTNAG	3 cut(s)	250, 876, 1458
DpnI	GATC	5 cut(s)	357, 621, 744, 1299, 1548
DpnII	GATC	5 cut(s)	355, 619, 742, 1297, 1546
DrdI	GACNNNNNNGTC	1 cut(s)	1490
DseDI	GACNNNNNNGTC	1 cut(s)	1490
Eco147I	AGGCCT	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	378, 1041, 1498
EcoRV	GATATC	1 cut(s)	811
EcoT22I	ATGCAT	2 cut(s)	270, 957
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	1059
FbaI	TGATCA	3 cut(s)	355, 742, 1546
Fnu4HI	GCNGC	4 cut(s)	275, 306, 347, 1241
FokI	GGATG	4 cut(s)	221, 432, 596, 803
Fsp4HI	GCNGC	4 cut(s)	275, 306, 347, 1241
FspBI	CTAG	3 cut(s)	47, 564, 687
GluI	GCNGC	4 cut(s)	275, 306, 347, 1241
HaeIII	GGCC	2 cut(s)	173, 1041
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	4 cut(s)	383, 971, 1207, 1367
HpaI	GTTAAC	1 cut(s)	376
HphI	GGTGA	3 cut(s)	1163, 1238, 1520
Hpy166II	GTNNAC	3 cut(s)	376, 574, 1361
Hpy188I	TCNGA	8 cut(s)	402, 583, 632, 942, 1009, 1276, 1459, 1476
Hpy188III	TCNNGA	7 cut(s)	195, 353, 428, 449, 740, 1195, 1550
Hpy8I	GTNNAC	3 cut(s)	376, 574, 1361
HpyAV	CCTTC	8 cut(s)	561, 588, 593, 709, 714, 1217, 1348, 1547
HpyCH4III	ACNGT	3 cut(s)	325, 709, 736
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	8 cut(s)	15, 82, 217, 268, 955, 1400, 1414, 1425
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 133, 274, 302, 886, 1175, 1288, 1331
HpyF3I	CTNAG	3 cut(s)	250, 876, 1458
HpySE526I	ACGT	1 cut(s)	967
Ksp22I	TGATCA	3 cut(s)	355, 742, 1546
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	355, 619, 742, 1297, 1546
Lsp1109I	GCAGC	4 cut(s)	286, 317, 358, 1252
LweI	GCATC	3 cut(s)	69, 442, 658
MaeI	CTAG	3 cut(s)	47, 564, 687
MaeII	ACGT	1 cut(s)	967
MaeIII	GTNAC	4 cut(s)	329, 539, 1226, 1450
MalI	GATC	5 cut(s)	357, 621, 744, 1299, 1548
MboI	GATC	5 cut(s)	355, 619, 742, 1297, 1546
MboII	GAAGA	4 cut(s)	241, 661, 779, 1493
MflI	RGATCY	1 cut(s)	1297
MluCI	AATT	7 cut(s)	148, 491, 591, 755, 1017, 1245, 1318
MlyI	GAGTC	2 cut(s)	377, 1376
MmeI	TCCRAC	4 cut(s)	1032, 1106, 1275, 1395
Mph1103I	ATGCAT	2 cut(s)	270, 957
MroXI	GAANNNNTTC	2 cut(s)	603, 1485
MseI	TTAA	3 cut(s)	375, 417, 1016
MslI	CAYNNNNRTG	2 cut(s)	207, 450
MspR9I	CCNGG	3 cut(s)	380, 1043, 1500
Mva1269I	GAATGC	2 cut(s)	603, 1171
MvaI	CCWGG	3 cut(s)	380, 1043, 1500
MwoI	GCNNNNNNNGC	8 cut(s)	47, 133, 274, 302, 886, 1175, 1288, 1331
NdeII	GATC	5 cut(s)	355, 619, 742, 1297, 1546
NheI	GCTAGC	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	1299, 1560
NmuCI	GTSAC	3 cut(s)	329, 1226, 1450
NsiI	ATGCAT	2 cut(s)	270, 957
NspI	RCATGY	4 cut(s)	268, 1182, 1286, 1418
PagI	TCATGA	2 cut(s)	352, 427
PceI	AGGCCT	1 cut(s)	173
PctI	GAATGC	2 cut(s)	603, 1171
PdmI	GAANNNNTTC	2 cut(s)	603, 1485
PfeI	GAWTC	2 cut(s)	971, 1207
PkrI	GCNGC	4 cut(s)	276, 307, 348, 1242
PleI	GAGTC	2 cut(s)	377, 1375
PpsI	GAGTC	2 cut(s)	377, 1375
Ppu21I	YACGTR	1 cut(s)	968
PshAI	GACNNNNGTC	1 cut(s)	1233
PshBI	ATTAAT	1 cut(s)	1016
Psp6I	CCWGG	3 cut(s)	378, 1041, 1498
PspGI	CCWGG	3 cut(s)	378, 1041, 1498
PspN4I	GGNNCC	2 cut(s)	1299, 1560
PstNI	CAGNNNCTG	2 cut(s)	311, 671
PsuI	RGATCY	1 cut(s)	1297
RsaI	GTAC	4 cut(s)	733, 861, 1362, 1497
RsaNI	GTAC	4 cut(s)	732, 860, 1361, 1496
RseI	CAYNNNNRTG	2 cut(s)	207, 450
SaqAI	TTAA	3 cut(s)	375, 417, 1016
SatI	GCNGC	4 cut(s)	275, 306, 347, 1241
Sau3AI	GATC	5 cut(s)	355, 619, 742, 1297, 1546
SchI	GAGTC	2 cut(s)	377, 1376
ScrFI	CCNGG	3 cut(s)	380, 1043, 1500
SfaNI	GCATC	3 cut(s)	69, 442, 658
SmiMI	CAYNNNNRTG	2 cut(s)	207, 450
SmlI	CTYRAG	1 cut(s)	1404
SmoI	CTYRAG	1 cut(s)	1404
Sse9I	AATT	7 cut(s)	148, 491, 591, 755, 1017, 1245, 1318
SseBI	AGGCCT	1 cut(s)	173
SsiI	CCGC	3 cut(s)	679, 871, 1128
SspMI	CTAG	3 cut(s)	47, 564, 687
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	378, 1041, 1498
TaaI	ACNGT	3 cut(s)	325, 709, 736
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	1 cut(s)	459
TaqII	GACCGA	1 cut(s)	1026
TasI	AATT	7 cut(s)	148, 491, 591, 755, 1017, 1245, 1318
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	2 cut(s)	971, 1207
Tru1I	TTAA	3 cut(s)	375, 417, 1016
Tru9I	TTAA	3 cut(s)	375, 417, 1016
TseFI	GTSAC	3 cut(s)	329, 1226, 1450
TseI	GCWGC	4 cut(s)	274, 305, 346, 1240
Tsp45I	GTSAC	3 cut(s)	329, 1226, 1450
VspI	ATTAAT	1 cut(s)	1016
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	4 cut(s)	268, 1182, 1286, 1418
XmnI	GAANNNNTTC	2 cut(s)	603, 1485
XspI	CTAG	3 cut(s)	47, 564, 687
Zsp2I	ATGCAT	2 cut(s)	270, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.