Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Forward (+)

61066210 .. 61067325

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGAACGGCTTCTGGTTGCCTAACAGCAAAGGATGCTTATATTTATCTGACCGGTAATCTTCATGACTCCAGTTGGGGTAATAATATCCGGCATGCAGCTATTCAACCCCGTAAAAACCTAGCTACTTGGAAAATTCTCCATAACAAGATTTTAACGGAGGAACTTCTCCAGCGCAGGGGTGTTCAGTTGTGCTCGAGATGTTGTTTCTGCTTCAAGGCAACAGAATCCACTCGTCACTTGTTTTGGGATTGTCAAGTTATTTTGGGATTGTGGGAGTGGCTTGCCAATCTTTTCCACAGACACTTTGATCCGGGTATGTCTTTGACGGATTATTTCAATGATTCTTTACTGCATGGGTTTGGCACTTCTACTAAATTGTTGTGGTTTATTGTGGGTTGCAACTTATTATGGTGCATCTGGTATGAGAGAAACCAGTTACGATTTAATGCAGGAACCTTCTGCCCAAATCATTTTCGCATCTTTTTCTTGAATGCCCTCCAAGACTCTGCCGGTTTGGCATTCAAACGTGCAGACTCAGCGGATGGCATCCGCCCTATTTTCAATCTATTGGGATTATCACCGTTGCGGTCTGAGGCTCCTAGGTTTTTTCCCATCAATTGGGAACCCCCTGATCCTCCATGGGTGAAGGCTAATACAGATGGATCATTCCGAAACATAAACCAAGCAGGTTCAGGAGGGGTTTTCCGTGGTCATGCTATGAATTTTTTGGGAGCCTTCTCCAAAAAAGTGAATGTTTGTAGTGCAATTGACGCTGAAATCATCGCTTTCTTGGAGGCCTTGAAGATTGCATGGAATAAAGGGTGGAATTATCTATGGCTGGAGACAGACTCTTTGTTACTTGTCCGTTATTTTAAGAACTCAGGTTTGGTTCCTTGGAGATGGCGGACTCATTGGAGGAATGGTATGTATCTTGCTAATCAATTGAACATCAAAGTGTCTCATATCTATCGTGAGGGGAATGCTGTGGCAGATGCTCTTGCTAATTATGGAGCAGCAAATGTTGGTGCTCTTTGGTGGAATGATGCTCCTCACTTCTTATTGCAGTCTCTTAGCTTTGATGCATCATCAAGGTTTTCTTACCGAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

371

Amino Acids

42.37

Weight (kDa)

9.16

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	10 - 92	2e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	219 - 337	5e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	621
AciI	CCGC	4 cut(s)	542, 553, 589, 907
AclWI	GGATC	3 cut(s)	305, 629, 673
AcsI	RAATTY	2 cut(s)	135, 724
AfiI	CCNNNNNNNGG	2 cut(s)	178, 621
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	8 cut(s)	107, 217, 340, 493, 526, 565, 805, 949
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AluBI	AGCT	4 cut(s)	101, 125, 1077, 1112
AluI	AGCT	4 cut(s)	101, 125, 1077, 1112
Alw21I	GWGCWC	2 cut(s)	197, 1033
Alw26I	GTCTC	3 cut(s)	839, 966, 1074
AlwI	GGATC	3 cut(s)	305, 629, 673
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	98, 1016
ApoI	RAATTY	2 cut(s)	135, 724
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	573, 658
AvaI	CYCGRG	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	602
Bbv12I	GWGCWC	2 cut(s)	197, 1033
BbvI	GCAGC	2 cut(s)	110, 1028
BccI	CCATC	4 cut(s)	539, 623, 656, 897
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	3 cut(s)	839, 966, 1074
BfaI	CTAG	2 cut(s)	122, 603
BfuAI	ACCTGC	1 cut(s)	680
BglI	GCCNNNNNGGC	1 cut(s)	518
BisI	GCNGC	2 cut(s)	99, 1017
BlnI	CCTAGG	1 cut(s)	602
BlsI	GCNGC	2 cut(s)	100, 1018
Bme1390I	CCNGG	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	5 cut(s)	457, 600, 627, 736, 894
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	8 cut(s)	25, 426, 489, 558, 985, 1036, 1072, 1094
BplI	GAGNNNNNCTC	2 cut(s)	836, 868
BpmI	CTGGAG	3 cut(s)	55, 155, 863
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	5 cut(s)	602, 641, 709, 896, 1105
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	910, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 621
Bse118I	RCCGGY	2 cut(s)	53, 512
Bse1I	ACTGG	2 cut(s)	72, 436
BseDI	CCNNGG	5 cut(s)	602, 641, 709, 896, 1105
BseGI	GGATG	3 cut(s)	40, 549, 550
BseLI	CCNNNNNNNGG	2 cut(s)	178, 621
BseMII	CTCAG	3 cut(s)	552, 585, 897
BseNI	ACTGG	2 cut(s)	72, 436
BseRI	GAGGAG	1 cut(s)	1041
BseXI	GCAGC	2 cut(s)	110, 1028
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	1 cut(s)	800
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	197, 1033
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	4 cut(s)	54, 91, 314, 513
BslI	CCNNNNNNNGG	2 cut(s)	178, 621
BsmAI	GTCTC	3 cut(s)	839, 966, 1074
BsmI	GAATGC	3 cut(s)	499, 521, 988
BsnI	GGCC	1 cut(s)	800
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	197, 1033
Bsp143I	GATC	3 cut(s)	310, 634, 665
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	4 cut(s)	542, 553, 589, 907
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	3 cut(s)	551, 586, 896
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	5 cut(s)	457, 600, 627, 736, 894
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	3 cut(s)	305, 629, 673
BsrFI	RCCGGY	2 cut(s)	53, 512
BsrI	ACTGG	2 cut(s)	72, 436
BssAI	RCCGGY	2 cut(s)	53, 512
BssECI	CCNNGG	5 cut(s)	602, 641, 709, 896, 1105
BssMI	GATC	3 cut(s)	310, 634, 665
BssT1I	CCWWGG	3 cut(s)	602, 641, 896
Bst4CI	ACNGT	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	96, 285
BstDEI	CTNAG	4 cut(s)	538, 594, 883, 1073
BstDSI	CCRYGG	2 cut(s)	641, 709
BstF5I	GGATG	3 cut(s)	40, 549, 550
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	313, 637, 668
BstMAI	GTCTC	3 cut(s)	839, 966, 1074
BstMBI	GATC	3 cut(s)	310, 634, 665
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 518, 539, 773
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	110, 1028
BsuRI	GGCC	1 cut(s)	800
BtgI	CCRYGG	2 cut(s)	641, 709
BtgZI	GCGATG	1 cut(s)	769
BtsCI	GGATG	3 cut(s)	40, 549, 550
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	96, 285
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	2 cut(s)	53, 512
CseI	GACGC	1 cut(s)	782
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	6 cut(s)	65, 95, 356, 642, 716, 813
DdeI	CTNAG	4 cut(s)	538, 594, 883, 1073
DpnI	GATC	3 cut(s)	312, 636, 667
DpnII	GATC	3 cut(s)	310, 634, 665
EciI	GGCGGA	2 cut(s)	542, 922
Eco130I	CCWWGG	3 cut(s)	602, 641, 896
Eco147I	AGGCCT	1 cut(s)	800
Eco88I	CYCGRG	1 cut(s)	196
EcoT14I	CCWWGG	3 cut(s)	602, 641, 896
EcoT22I	ATGCAT	1 cut(s)	1087
ErhI	CCWWGG	3 cut(s)	602, 641, 896
FaeI	CATG	6 cut(s)	68, 98, 359, 645, 719, 816
FalI	AAGNNNNNCTT	2 cut(s)	1084, 1116
FatI	CATG	6 cut(s)	64, 94, 355, 641, 715, 812
Fnu4HI	GCNGC	2 cut(s)	99, 1017
FokI	GGATG	3 cut(s)	47, 536, 557
Fsp4HI	GCNGC	2 cut(s)	99, 1017
FspBI	CTAG	2 cut(s)	122, 603
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	2 cut(s)	99, 1017
GsuI	CTGGAG	3 cut(s)	55, 155, 863
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	4 cut(s)	54, 91, 314, 513
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	68, 98, 359, 645, 719, 816
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	7 cut(s)	68, 227, 344, 506, 536, 851, 910
HpaII	CCGG	4 cut(s)	54, 91, 314, 513
HphI	GGTGA	2 cut(s)	573, 658
Hpy188I	TCNGA	3 cut(s)	51, 595, 674
Hpy188III	TCNNGA	5 cut(s)	65, 198, 490, 696, 974
HpyAV	CCTTC	3 cut(s)	469, 643, 748
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 518, 539, 773
HpyF3I	CTNAG	4 cut(s)	538, 594, 883, 1073
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	6 cut(s)	68, 98, 359, 645, 719, 816
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	310, 634, 665
LmnI	GCTCC	5 cut(s)	604, 734, 1013, 1054, 1109
Lsp1109I	GCAGC	2 cut(s)	110, 1028
LweI	GCATC	8 cut(s)	25, 426, 489, 558, 985, 1036, 1072, 1094
MaeI	CTAG	2 cut(s)	122, 603
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	3 cut(s)	236, 438, 858
MalI	GATC	3 cut(s)	312, 636, 667
MboI	GATC	3 cut(s)	310, 634, 665
MboII	GAAGA	2 cut(s)	53, 817
MfeI	CAATTG	3 cut(s)	619, 768, 944
MhlI	GDGCHC	2 cut(s)	197, 1033
MluCI	AATT	8 cut(s)	135, 377, 619, 724, 768, 829, 944, 1006
MlyI	GAGTC	5 cut(s)	62, 500, 530, 845, 904
Mph1103I	ATGCAT	1 cut(s)	1087
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	3 cut(s)	155, 447, 876
MslI	CAYNNNNRTG	1 cut(s)	956
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	4 cut(s)	54, 91, 314, 513
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	3 cut(s)	619, 768, 944
Mva1269I	GAATGC	3 cut(s)	499, 521, 988
MwoI	GCNNNNNNNGC	4 cut(s)	35, 518, 539, 773
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	3 cut(s)	310, 634, 665
NlaIII	CATG	6 cut(s)	68, 98, 359, 645, 719, 816
NlaIV	GGNNCC	5 cut(s)	457, 600, 627, 736, 894
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	1087
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	800
PctI	GAATGC	3 cut(s)	499, 521, 988
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	227, 344
PflMI	CCANNNNNTGG	1 cut(s)	621
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	100, 1018
PleI	GAGTC	5 cut(s)	62, 500, 530, 845, 904
PpsI	GAGTC	5 cut(s)	62, 500, 530, 845, 904
PspN4I	GGNNCC	5 cut(s)	457, 600, 627, 736, 894
RseI	CAYNNNNRTG	1 cut(s)	956
SaqAI	TTAA	3 cut(s)	155, 447, 876
SatI	GCNGC	2 cut(s)	99, 1017
Sau3AI	GATC	3 cut(s)	310, 634, 665
SchI	GAGTC	5 cut(s)	62, 500, 530, 845, 904
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	197, 1033
SfaNI	GCATC	8 cut(s)	25, 426, 489, 558, 985, 1036, 1072, 1094
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	8 cut(s)	135, 377, 619, 724, 768, 829, 944, 1006
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	4 cut(s)	542, 553, 589, 907
SspMI	CTAG	2 cut(s)	122, 603
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	3 cut(s)	602, 641, 896
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	197
TasI	AATT	8 cut(s)	135, 377, 619, 724, 768, 829, 944, 1006
TfiI	GAWTC	2 cut(s)	227, 344
Tru1I	TTAA	3 cut(s)	155, 447, 876
Tru9I	TTAA	3 cut(s)	155, 447, 876
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	98, 1016
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	53, 737
TspGWI	ACGGA	4 cut(s)	173, 344, 698, 857
Van91I	CCANNNNNTGG	1 cut(s)	621
XapI	RAATTY	2 cut(s)	135, 724
XceI	RCATGY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	196
XmaJI	CCTAGG	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	2 cut(s)	122, 603
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.