Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Forward (+)

8149283 .. 8153389

Gene Structure 4107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGCTTATGGGTTCAAATTCAGTTGTGGATATGATAGAGGCCTCCTCGGGGGTTCATTTTTCTGGATTTCACATGGATGGTTTGCAGCAAAGACTGAAGATTGAGCAACCGACAACCTCAGCAAATGAAAACATGCATAAGCAGCCTTTTGTTATTGGGGTTGCTGGTGGGGCGGCTTCTGGTAAGACTACAGTTTGTGACATGATTATACAGCAGCTTCATGATCAGCGTGTAGTTCTTGTTAACCAGGACTCGTTTTATCATAATCTGACCAGCGAGGAACTTAAACGGGTTCATGAATACAACTTTGACCATCCTGATGCTTTCGACACAGAGAAACTATTATCTTATATGGACAAGTTGAAGCATGGGCAAGCAGTAGATATTCCAAACTATGATTTCAAAAGTTACAAAAATAATGTGTTTCCAGCTAGAAGGGTAAACCCTTCGGATGTCATAATTTTGGAAGGCATTCTTGTTTTCCATGATCCTCGTGTCCGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTGCGGTTGGCTAGGAGGATAAGGCGTGATACGGTTGAGAAGGGAAGGGATATTGGTACAGTTCTTGATCAGTATTCACAATTTGTAAAGCCTGCTTTTGATGATTTTATTCTTCCTACAAAGAAGTATGCCGATATCATCATACCTCGTGGTGGAGATAATCACATAGCTGTTGATTTGATTGTACAACATATCCGCACTAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCTAACTTATATGTCATTCATTCAACCTTTCAGATACGGGGTATGCATACCCTCATACGTGATTCTCAAACAACAAAGCATGATTTTGTTTTCTATTCCGACCGATTAATTCGTTTGGTTGTTGAGCATGGCCTGGGACACCTACCTTTTACTGAAAAGCAGGTCATCACTCCAACTGGGTCTGTGTATATTGGTGTGGATTTTTGTAAGAGGTTATGCGGTGTTTCTGTCATTAGGAGTGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGCAAGATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATTTATGAAAAGCTACCCAGCGACATTTCAGAGAGGCATGTATTGCTGTTGGATCCTATCTTGGGAACAGGGAATTCGGCTGTTCAAGCTATTTCTCTACTTCTAAAGAAGGGTGTACCAGAGTCCAACATCATATTTCTCAATCTCATATCTGCACCTCAAGGTGTGCATGTGGTCTGCAAACGCTTCCCCAGAATAAAGATTGTGACATCTGAGATTGAAACTGGTCTGAATGAAGACTTTCGTGTCGTACCTGGCATGGGTGAGTTTGGGGATAGATATTTTGGAACTGATGACGATGATCAAGAAGGGGTGCCTCCATCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

480

Amino Acids

54.09

Weight (kDa)

6.47

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	51 - 237	8.2e-48	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	267 - 468	2.7e-73	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1358
Acc36I	ACCTGC	1 cut(s)	928
AccB1I	GGYRCC	1 cut(s)	1426
AciI	CCGC	4 cut(s)	173, 547, 739, 996
AclWI	GGATC	3 cut(s)	482, 1160, 1173
AcsI	RAATTY	2 cut(s)	16, 1186
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	4 cut(s)	601, 729, 1230, 1365
AfiI	CCNNNNNNNGG	4 cut(s)	48, 695, 1175, 1373
AgsI	TTSAA	6 cut(s)	15, 364, 403, 801, 1199, 1334
AjnI	CCWGG	3 cut(s)	246, 909, 1366
AluBI	AGCT	7 cut(s)	217, 431, 713, 748, 1111, 1126, 1202
AluI	AGCT	7 cut(s)	217, 431, 713, 748, 1111, 1126, 1202
AlwI	GGATC	3 cut(s)	482, 1160, 1173
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	2 cut(s)	39, 907
ApeKI	GCWGC	4 cut(s)	85, 142, 214, 1108
ApoI	RAATTY	2 cut(s)	16, 1186
AseI	ATTAAT	1 cut(s)	884
Asp700I	GAANNNNTTC	2 cut(s)	471, 1353
AsuHPI	GGTGA	3 cut(s)	1031, 1106, 1388
AvaI	CYCGRG	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	1165
BanI	GGYRCC	1 cut(s)	1426
BauI	CACGAG	2 cut(s)	492, 690
BbsI	GAAGAC	1 cut(s)	1356
BbvCI	CCTCAGC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	97, 154, 226, 1120
BccI	CCATC	3 cut(s)	71, 321, 1441
BciT130I	CCWGG	3 cut(s)	248, 911, 1368
BclI	TGATCA	3 cut(s)	223, 610, 1414
BfaI	CTAG	2 cut(s)	432, 555
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	928
BisI	GCNGC	5 cut(s)	86, 143, 174, 215, 1109
BlsI	GCNGC	5 cut(s)	87, 144, 175, 216, 1110
Bme1390I	CCNGG	3 cut(s)	248, 911, 1368
BmeT110I	CYCGRG	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	1167, 1428
BmrFI	CCNGG	3 cut(s)	248, 911, 1368
BmrI	ACTGGG	1 cut(s)	963
BmsI	GCATC	2 cut(s)	310, 526
BmuI	ACTGGG	1 cut(s)	963
BoxI	GACNNNNGTC	1 cut(s)	1101
BpiI	GAAGAC	1 cut(s)	1356
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	1257
BsaAI	YACGTR	1 cut(s)	836
BsaJI	CCNNGG	2 cut(s)	45, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 695, 1175, 1373
Bse1I	ACTGG	2 cut(s)	958, 1342
BseBI	CCWGG	3 cut(s)	248, 911, 1368
BseDI	CCNNGG	2 cut(s)	45, 910
BseGI	GGATG	3 cut(s)	82, 313, 457
BseLI	CCNNNNNNNGG	4 cut(s)	48, 695, 1175, 1373
BseMII	CTCAG	2 cut(s)	132, 1317
BseNI	ACTGG	2 cut(s)	958, 1342
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	4 cut(s)	97, 154, 226, 1120
BseYI	CCCAGC	1 cut(s)	1130
BsgI	GTGCAG	1 cut(s)	1251
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	2 cut(s)	41, 909
BshNI	GGYRCC	1 cut(s)	1426
BsiEI	CGRYCG	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	4 cut(s)	48, 695, 1175, 1373
BsmFI	GGGAC	1 cut(s)	927
BsmI	GAATGC	2 cut(s)	471, 1039
BsnI	GGCC	2 cut(s)	41, 909
BsoBI	CYCGRG	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	223, 487, 610, 1165, 1414
BspACI	CCGC	4 cut(s)	173, 547, 739, 996
BspANI	GGCC	2 cut(s)	41, 909
BspCNI	CTCAG	2 cut(s)	131, 1318
BspHI	TCATGA	2 cut(s)	220, 295
BspLI	GGNNCC	2 cut(s)	1167, 1428
BspMI	ACCTGC	1 cut(s)	928
BspPI	GGATC	3 cut(s)	482, 1160, 1173
BspT107I	GGYRCC	1 cut(s)	1426
BsrGI	TGTACA	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	958, 1342
BssECI	CCNNGG	2 cut(s)	45, 910
BssMI	GATC	5 cut(s)	223, 487, 610, 1165, 1414
BssSI	CACGAG	2 cut(s)	492, 690
Bst2BI	CACGAG	2 cut(s)	492, 690
Bst2UI	CCWGG	3 cut(s)	248, 911, 1368
Bst4CI	ACNGT	3 cut(s)	193, 577, 604
BstAPI	GCANNNNNTGC	1 cut(s)	1156
BstAUI	TGTACA	1 cut(s)	727
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	3 cut(s)	375, 636, 1044
BstDEI	CTNAG	3 cut(s)	118, 744, 1326
BstF5I	GGATG	3 cut(s)	82, 313, 457
BstKTI	GATC	5 cut(s)	226, 490, 613, 1168, 1417
BstMBI	GATC	5 cut(s)	223, 487, 610, 1165, 1414
BstMCI	CGRYCG	1 cut(s)	880
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 170, 754, 1043, 1156, 1199
BstNI	CCWGG	3 cut(s)	248, 911, 1368
BstNSI	RCATGY	4 cut(s)	136, 1050, 1154, 1286
BstPAI	GACNNNNGTC	1 cut(s)	1101
BstSCI	CCNGG	3 cut(s)	246, 909, 1366
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	97, 154, 226, 1120
BstV2I	GAAGAC	1 cut(s)	1356
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
BsuRI	GGCC	2 cut(s)	41, 909
BtsCI	GGATG	3 cut(s)	82, 313, 457
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	3 cut(s)	375, 636, 1044
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	2 cut(s)	220, 295
Csp6I	GTAC	4 cut(s)	600, 728, 1229, 1364
CviQI	GTAC	4 cut(s)	600, 728, 1229, 1364
DdeI	CTNAG	3 cut(s)	118, 744, 1326
DpnI	GATC	5 cut(s)	225, 489, 612, 1167, 1416
DpnII	GATC	5 cut(s)	223, 487, 610, 1165, 1414
DrdI	GACNNNNNNGTC	1 cut(s)	1358
DseDI	GACNNNNNNGTC	1 cut(s)	1358
Eco147I	AGGCCT	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	1186
EcoRII	CCWGG	3 cut(s)	246, 909, 1366
EcoRV	GATATC	1 cut(s)	679
EcoT22I	ATGCAT	2 cut(s)	138, 825
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	927
FbaI	TGATCA	3 cut(s)	223, 610, 1414
Fnu4HI	GCNGC	5 cut(s)	86, 143, 174, 215, 1109
FokI	GGATG	3 cut(s)	89, 300, 464
Fsp4HI	GCNGC	5 cut(s)	86, 143, 174, 215, 1109
FspBI	CTAG	2 cut(s)	432, 555
GluI	GCNGC	5 cut(s)	86, 143, 174, 215, 1109
GsaI	CCCAGC	1 cut(s)	1134
HaeIII	GGCC	2 cut(s)	41, 909
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	4 cut(s)	251, 839, 1075, 1235
HpaI	GTTAAC	1 cut(s)	244
HphI	GGTGA	3 cut(s)	1031, 1106, 1388
Hpy166II	GTNNAC	3 cut(s)	244, 442, 1229
Hpy188I	TCNGA	8 cut(s)	270, 451, 500, 810, 877, 1144, 1327, 1344
Hpy188III	TCNNGA	7 cut(s)	63, 221, 296, 317, 608, 1063, 1418
Hpy8I	GTNNAC	3 cut(s)	244, 442, 1229
HpyAV	CCTTC	8 cut(s)	429, 456, 461, 577, 582, 1085, 1216, 1415
HpyCH4III	ACNGT	3 cut(s)	193, 577, 604
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	6 cut(s)	85, 136, 823, 1268, 1282, 1293
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 170, 754, 1043, 1156, 1199
HpyF3I	CTNAG	3 cut(s)	118, 744, 1326
HpySE526I	ACGT	1 cut(s)	835
Ksp22I	TGATCA	3 cut(s)	223, 610, 1414
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	223, 487, 610, 1165, 1414
Lsp1109I	GCAGC	4 cut(s)	97, 154, 226, 1120
LweI	GCATC	2 cut(s)	310, 526
MaeI	CTAG	2 cut(s)	432, 555
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	4 cut(s)	197, 407, 1094, 1318
MalI	GATC	5 cut(s)	225, 489, 612, 1167, 1416
MboI	GATC	5 cut(s)	223, 487, 610, 1165, 1414
MboII	GAAGA	4 cut(s)	109, 529, 647, 1361
MflI	RGATCY	1 cut(s)	1165
MluCI	AATT	6 cut(s)	16, 459, 623, 885, 1113, 1186
MlyI	GAGTC	2 cut(s)	245, 1244
MmeI	TCCRAC	4 cut(s)	900, 974, 1143, 1263
Mph1103I	ATGCAT	2 cut(s)	138, 825
MroXI	GAANNNNTTC	2 cut(s)	471, 1353
MseI	TTAA	3 cut(s)	243, 285, 884
MslI	CAYNNNNRTG	2 cut(s)	75, 318
MspR9I	CCNGG	3 cut(s)	248, 911, 1368
Mva1269I	GAATGC	2 cut(s)	471, 1039
MvaI	CCWGG	3 cut(s)	248, 911, 1368
MwoI	GCNNNNNNNGC	6 cut(s)	142, 170, 754, 1043, 1156, 1199
NdeII	GATC	5 cut(s)	223, 487, 610, 1165, 1414
NlaIV	GGNNCC	2 cut(s)	1167, 1428
NmuCI	GTSAC	3 cut(s)	197, 1094, 1318
NsiI	ATGCAT	2 cut(s)	138, 825
NspI	RCATGY	4 cut(s)	136, 1050, 1154, 1286
PagI	TCATGA	2 cut(s)	220, 295
PceI	AGGCCT	1 cut(s)	41
PctI	GAATGC	2 cut(s)	471, 1039
PdmI	GAANNNNTTC	2 cut(s)	471, 1353
PfeI	GAWTC	2 cut(s)	839, 1075
PkrI	GCNGC	5 cut(s)	87, 144, 175, 216, 1110
PleI	GAGTC	2 cut(s)	245, 1243
PpsI	GAGTC	2 cut(s)	245, 1243
Ppu21I	YACGTR	1 cut(s)	836
PshAI	GACNNNNGTC	1 cut(s)	1101
PshBI	ATTAAT	1 cut(s)	884
Psp6I	CCWGG	3 cut(s)	246, 909, 1366
PspFI	CCCAGC	1 cut(s)	1130
PspGI	CCWGG	3 cut(s)	246, 909, 1366
PspN4I	GGNNCC	2 cut(s)	1167, 1428
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	1165
RsaI	GTAC	4 cut(s)	601, 729, 1230, 1365
RsaNI	GTAC	4 cut(s)	600, 728, 1229, 1364
RseI	CAYNNNNRTG	2 cut(s)	75, 318
SaqAI	TTAA	3 cut(s)	243, 285, 884
SatI	GCNGC	5 cut(s)	86, 143, 174, 215, 1109
Sau3AI	GATC	5 cut(s)	223, 487, 610, 1165, 1414
SchI	GAGTC	2 cut(s)	245, 1244
ScrFI	CCNGG	3 cut(s)	248, 911, 1368
SfaNI	GCATC	2 cut(s)	310, 526
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	2 cut(s)	75, 318
SmlI	CTYRAG	1 cut(s)	1272
SmoI	CTYRAG	1 cut(s)	1272
Sse9I	AATT	6 cut(s)	16, 459, 623, 885, 1113, 1186
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	173, 547, 739, 996
SspMI	CTAG	2 cut(s)	432, 555
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	246, 909, 1366
TaaI	ACNGT	3 cut(s)	193, 577, 604
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	6 cut(s)	16, 459, 623, 885, 1113, 1186
TatI	WGTACW	1 cut(s)	727
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	839, 1075
Tru1I	TTAA	3 cut(s)	243, 285, 884
Tru9I	TTAA	3 cut(s)	243, 285, 884
TseFI	GTSAC	3 cut(s)	197, 1094, 1318
TseI	GCWGC	4 cut(s)	85, 142, 214, 1108
Tsp45I	GTSAC	3 cut(s)	197, 1094, 1318
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	2 cut(s)	16, 1186
XceI	RCATGY	4 cut(s)	136, 1050, 1154, 1286
XmnI	GAANNNNTTC	2 cut(s)	471, 1353
XspI	CTAG	2 cut(s)	432, 555
Zsp2I	ATGCAT	2 cut(s)	138, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.