Prupe.6G029400_v2.0.a1

Belongs to the uridine kinase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
2287512 .. 2294069
6558 bp
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UTR
Exon/CDS
Intron
Prupe.6G029400.3

Sequence Viewer

Length: 1443 bp
ATGATCATGGGTTCAAATTCAGTTGTGGATATGATAGAGGCCTCCTCAGGGGTTCATTTTTCTGGATTTCATATGGATGGTTTAGAGCAAAGACAGAAGGTGGAGCAACCAACAACCTCAGCACATGAAAACATGCATAAGCAGCCTTTTGTTATTGGGGTTGCTGGCGGGGCAGCTTCTGGTAAGACGACAGTTTGTGATATGATTATACAGCAGCTTCATGATCAGCGGGTTGTTCTTGTTAACCAGGATTCCTTTTATCATAATCTGACTGAGGAGGAACTTAAACGAGTACATGAATACAACTTTGACCATCCTGATGCATTCGACACTGAGAAACTATTATCTTCGATGGATAAGTTGAAGCATGGACAAGCAGTAGATATTCCAAATTATGATTTCAAAAGTTACAAAAATAGCGTGTTTCCAGCTAGAAGGGTAAACCCTTCAGATGTCATTATTTTGGAAGGCATTCTTGTTTTCCATGATCCACGTGTTCGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGGTTGGCTAGGAGGATAAGGCGTGATACAGTTGAAAAGGGAAGGGATATTGGTACTGTTCTTGATCAGTACTCAAATTTTGTTAAGCCTGCTTTTGATGACTTTATTCTTCCAACGAAGAAGTATGCTGATATCATAATTCCTCGTGGTGGAGATAATCACATAGCTGTTGATTTGATTGTACAACATATTCGTACTAAGCTTGGTCAACATGACCTTTGTAAAATTTATCCAAACTTATATGTCATTCACTCAACCTTTCAGATACGGGGCATGCATACCCTCATACGCGATGCTCAAACAACAAAGCATGATTTTGTTTTCTATTCTGACAGGTTGATTCGTTTGGTTGTTGAACATGGCCTGGGACATCTACCATTTACTGAAAAGCAGGTGATCACTCCAACTGGGTCTGTGTATATTGGTGTGGATTTTTGTAAGAGGTTATGTGGCGTATCTATCATTAGGAGTGGTGAGAGCATGGAGAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGAAAGATTCTTATTCATAGAGAAGGGGATAATGGTCAGCAGCTGATTTATGAAAAACTACCCAACGACATTTCAGAGAGGCATGTATTACTGTTGGATCCTATCCTGGGCACAGGGAATTCGGCTGTTCAAGCTATTTCTCTACTCTTAAAGAAGGGCGTACCAGAGTCCAACATTATATTTCTGAATCTCATATCTGCACCTCAAGGTGTGCATATGGTTTGCAAACGCTTCCCCAGAATAAAGATTGTGACATCTGAGATTGAAAGTGGTCTCAATGAAGATTTTCGTGTCGTACCCGGAATGGGTGAGTTTGGGGACCGATATTTTGGAACTGATGACGATGATCAACAAGTGGTATCTCCTTCGGTGTAA

Protein Analysis

481

Amino Acids

54.09

Weight (kDa)

6.31

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 928
AccII CGCG 1 cut(s) 837
AciI CCGC 2 cut(s) 168, 229
AclWI GGATC 3 cut(s) 482, 1160, 1173
AcsI RAATTY 4 cut(s) 16, 622, 771, 1186
AcuI CTGAAG 1 cut(s) 432
AcvI CACGTG 1 cut(s) 494
AfaI GTAC 7 cut(s) 294, 601, 617, 729, 742, 1230, 1365
AfiI CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 7 cut(s) 15, 364, 403, 581, 902, 1199, 1334
AjnI CCWGG 3 cut(s) 246, 909, 1173
AluBI AGCT 7 cut(s) 176, 217, 431, 713, 748, 1111, 1202
AluI AGCT 7 cut(s) 176, 217, 431, 713, 748, 1111, 1202
Alw26I GTCTC 1 cut(s) 1346
AlwI GGATC 3 cut(s) 482, 1160, 1173
AlwNI CAGNNNCTG 3 cut(s) 179, 539, 1111
AoxI GGCC 2 cut(s) 39, 907
ApeKI GCWGC 4 cut(s) 142, 173, 214, 1108
ApoI RAATTY 4 cut(s) 16, 622, 771, 1186
ArsI GACNNNNNNTTYG 2 cut(s) 1379, 1411
Asp700I GAANNNNTTC 2 cut(s) 471, 1353
AspS9I GGNCC 1 cut(s) 1387
AsuC2I CCSGG 1 cut(s) 1368
AsuHPI GGTGA 3 cut(s) 952, 1031, 1388
AvaII GGWCC 1 cut(s) 1387
AxyI CCTNAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 1181
BamHI GGATCC 1 cut(s) 1165
BauI CACGAG 1 cut(s) 690
BbrPI CACGTG 1 cut(s) 494
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 154, 185, 226, 1120
BccI CCATC 3 cut(s) 71, 321, 346
BciT130I CCWGG 3 cut(s) 248, 911, 1175
BclI TGATCA 5 cut(s) 3, 223, 610, 942, 1414
BcnI CCSGG 1 cut(s) 1368
BcoDI GTCTC 1 cut(s) 1346
BfaI CTAG 2 cut(s) 432, 555
BfuAI ACCTGC 1 cut(s) 928
BisI GCNGC 4 cut(s) 143, 174, 215, 1109
BlsI GCNGC 4 cut(s) 144, 175, 216, 1110
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 4 cut(s) 248, 911, 1175, 1368
Bme18I GGWCC 1 cut(s) 1387
BmgT120I GGNCC 1 cut(s) 1387
BmiI GGNNCC 2 cut(s) 1167, 1388
BmrFI CCNGG 4 cut(s) 248, 911, 1175, 1368
BmrI ACTGGG 1 cut(s) 963
BmsI GCATC 3 cut(s) 310, 526, 829
BmuI ACTGGG 1 cut(s) 963
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu10I CCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 1257
BpuMI CCSGG 1 cut(s) 1368
BsaAI YACGTR 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 1346
BsaJI CCNNGG 2 cut(s) 910, 1174
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
Bse1I ACTGG 1 cut(s) 958
Bse21I CCTNAGG 1 cut(s) 46
BseBI CCWGG 3 cut(s) 248, 911, 1175
BseDI CCNNGG 2 cut(s) 910, 1174
BseGI GGATG 2 cut(s) 82, 313
BseLI CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
BseMII CTCAG 5 cut(s) 60, 132, 264, 324, 1317
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 2 cut(s) 34, 290
BseSI GKGCMC 1 cut(s) 1181
BseXI GCAGC 4 cut(s) 154, 185, 226, 1120
BsgI GTGCAG 1 cut(s) 1251
Bsh1236I CGCG 1 cut(s) 837
BshFI GGCC 2 cut(s) 41, 909
BsiSI CCGG 1 cut(s) 1368
BslFI GGGAC 2 cut(s) 927, 1400
BslI CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
BsmAI GTCTC 1 cut(s) 1346
BsmFI GGGAC 2 cut(s) 927, 1400
BsmI GAATGC 3 cut(s) 323, 471, 1039
BsnI GGCC 2 cut(s) 41, 909
Bso31I GGTCTC 1 cut(s) 1346
Bsp1286I GDGCHC 1 cut(s) 1181
Bsp1407I TGTACA 1 cut(s) 727
Bsp143I GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
BspACI CCGC 2 cut(s) 168, 229
BspANI GGCC 2 cut(s) 41, 909
BspCNI CTCAG 5 cut(s) 59, 131, 265, 325, 1318
BspFNI CGCG 1 cut(s) 837
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 1167, 1388
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 3 cut(s) 482, 1160, 1173
BspTNI GGTCTC 1 cut(s) 1346
BsrGI TGTACA 1 cut(s) 727
BsrI ACTGG 1 cut(s) 958
BssECI CCNNGG 2 cut(s) 910, 1174
BssMI GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
BssSI CACGAG 1 cut(s) 690
Bst2BI CACGAG 1 cut(s) 690
Bst2UI CCWGG 3 cut(s) 248, 911, 1175
Bst4CI ACNGT 4 cut(s) 193, 577, 604, 1161
BstAUI TGTACA 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 4 cut(s) 166, 636, 821, 1044
BstDEI CTNAG 6 cut(s) 46, 118, 273, 333, 744, 1326
BstF5I GGATG 2 cut(s) 82, 313
BstFNI CGCG 1 cut(s) 837
BstKTI GATC 7 cut(s) 6, 226, 490, 613, 945, 1168, 1417
BstMAI GTCTC 1 cut(s) 1346
BstMBI GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
BstMWI GCNNNNNNNGC 4 cut(s) 142, 170, 1043, 1199
BstNI CCWGG 3 cut(s) 248, 911, 1175
BstNSI RCATGY 4 cut(s) 136, 823, 1050, 1154
BstSCI CCNGG 4 cut(s) 246, 909, 1173, 1366
BstSLI GKGCMC 1 cut(s) 1181
BstUI CGCG 1 cut(s) 837
BstV1I GCAGC 4 cut(s) 154, 185, 226, 1120
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
Bsu36I CCTNAGG 1 cut(s) 46
BsuRI GGCC 2 cut(s) 41, 909
BtgZI GCGATG 1 cut(s) 852
BtsCI GGATG 2 cut(s) 82, 313
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 166, 636, 821, 1044
CaiI CAGNNNCTG 3 cut(s) 179, 539, 1111
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 1387
Csp6I GTAC 7 cut(s) 293, 600, 616, 728, 741, 1229, 1364
CviQI GTAC 7 cut(s) 293, 600, 616, 728, 741, 1229, 1364
DdeI CTNAG 6 cut(s) 46, 118, 273, 333, 744, 1326
DpnI GATC 7 cut(s) 5, 225, 489, 612, 944, 1167, 1416
DpnII GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
Eco147I AGGCCT 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 1346
Eco32I GATATC 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 1387
Eco57I CTGAAG 1 cut(s) 432
Eco72I CACGTG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 1186
EcoRII CCWGG 3 cut(s) 246, 909, 1173
EcoRV GATATC 1 cut(s) 679
EcoT22I ATGCAT 3 cut(s) 138, 325, 825
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 927, 1400
FauI CCCGC 2 cut(s) 161, 222
FauNDI CATATG 2 cut(s) 72, 1284
FbaI TGATCA 5 cut(s) 3, 223, 610, 942, 1414
Fnu4HI GCNGC 4 cut(s) 143, 174, 215, 1109
FokI GGATG 2 cut(s) 89, 300
Fsp4HI GCNGC 4 cut(s) 143, 174, 215, 1109
FspBI CTAG 2 cut(s) 432, 555
GluI GCNGC 4 cut(s) 143, 174, 215, 1109
HaeIII GGCC 2 cut(s) 41, 909
HapII CCGG 1 cut(s) 1368
HincII GTYRAC 2 cut(s) 244, 755
HindII GTYRAC 2 cut(s) 244, 755
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 5 cut(s) 251, 886, 1075, 1235, 1255
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 1 cut(s) 1368
HphI GGTGA 3 cut(s) 952, 1031, 1388
Hpy166II GTNNAC 3 cut(s) 244, 442, 755
Hpy188I TCNGA 7 cut(s) 270, 451, 810, 877, 1144, 1254, 1327
Hpy188III TCNNGA 6 cut(s) 63, 221, 317, 500, 608, 1063
Hpy8I GTNNAC 3 cut(s) 244, 442, 755
HpyAV CCTTC 8 cut(s) 91, 429, 456, 461, 582, 1085, 1216, 1443
HpyCH4III ACNGT 4 cut(s) 193, 577, 604, 1161
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 6 cut(s) 136, 323, 823, 1268, 1282, 1293
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 170, 1043, 1199
HpyF3I CTNAG 6 cut(s) 46, 118, 273, 333, 744, 1326
HpySE526I ACGT 1 cut(s) 493
Ksp22I TGATCA 5 cut(s) 3, 223, 610, 942, 1414
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 4 cut(s) 154, 185, 226, 1120
LweI GCATC 3 cut(s) 310, 526, 829
MaeI CTAG 2 cut(s) 432, 555
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 2 cut(s) 407, 1318
MalI GATC 7 cut(s) 5, 225, 489, 612, 944, 1167, 1416
MboI GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
MboII GAAGA 5 cut(s) 339, 529, 647, 676, 1361
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 1 cut(s) 1181
MluCI AATT 6 cut(s) 16, 391, 622, 684, 771, 1186
MlyI GAGTC 1 cut(s) 1244
MmeI TCCRAC 4 cut(s) 683, 974, 1143, 1263
Mph1103I ATGCAT 3 cut(s) 138, 325, 825
MroXI GAANNNNTTC 2 cut(s) 471, 1353
MseI TTAA 4 cut(s) 243, 285, 630, 1217
MslI CAYNNNNRTG 2 cut(s) 75, 318
MspA1I CMGCKG 2 cut(s) 229, 1111
MspI CCGG 1 cut(s) 1368
MspR9I CCNGG 4 cut(s) 248, 911, 1175, 1368
Mva1269I GAATGC 3 cut(s) 323, 471, 1039
MvaI CCWGG 3 cut(s) 248, 911, 1175
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 4 cut(s) 142, 170, 1043, 1199
NciI CCSGG 1 cut(s) 1368
NdeI CATATG 2 cut(s) 72, 1284
NdeII GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
NlaIV GGNNCC 2 cut(s) 1167, 1388
NmuCI GTSAC 1 cut(s) 1318
NsiI ATGCAT 3 cut(s) 138, 325, 825
NspI RCATGY 4 cut(s) 136, 823, 1050, 1154
PaeI GCATGC 1 cut(s) 823
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 928
PceI AGGCCT 1 cut(s) 41
PctI GAATGC 3 cut(s) 323, 471, 1039
PdmI GAANNNNTTC 2 cut(s) 471, 1353
PfeI GAWTC 4 cut(s) 251, 886, 1075, 1255
PkrI GCNGC 4 cut(s) 144, 175, 216, 1110
PleI GAGTC 1 cut(s) 1243
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 1 cut(s) 1243
Ppu21I YACGTR 1 cut(s) 494
Psp6I CCWGG 3 cut(s) 246, 909, 1173
PspCI CACGTG 1 cut(s) 494
PspGI CCWGG 3 cut(s) 246, 909, 1173
PspN4I GGNNCC 2 cut(s) 1167, 1388
PspPI GGNCC 1 cut(s) 1387
PstNI CAGNNNCTG 3 cut(s) 179, 539, 1111
PsuI RGATCY 1 cut(s) 1165
PvuII CAGCTG 1 cut(s) 1111
RsaI GTAC 7 cut(s) 294, 601, 617, 729, 742, 1230, 1365
RsaNI GTAC 7 cut(s) 293, 600, 616, 728, 741, 1229, 1364
RseI CAYNNNNRTG 2 cut(s) 75, 318
SaqAI TTAA 4 cut(s) 243, 285, 630, 1217
SatI GCNGC 4 cut(s) 143, 174, 215, 1109
Sau3AI GATC 7 cut(s) 3, 223, 487, 610, 942, 1165, 1414
Sau96I GGNCC 1 cut(s) 1387
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 1 cut(s) 1244
ScrFI CCNGG 4 cut(s) 248, 911, 1175, 1368
SduI GDGCHC 1 cut(s) 1181
SfaNI GCATC 3 cut(s) 310, 526, 829
SinI GGWCC 1 cut(s) 1387
SmiMI CAYNNNNRTG 2 cut(s) 75, 318
SmlI CTYRAG 1 cut(s) 1272
SmoI CTYRAG 1 cut(s) 1272
SphI GCATGC 1 cut(s) 823
Sse9I AATT 6 cut(s) 16, 391, 622, 684, 771, 1186
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 2 cut(s) 168, 229
SspMI CTAG 2 cut(s) 432, 555
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 246, 909, 1173, 1366
TaaI ACNGT 4 cut(s) 193, 577, 604, 1161
TaiI ACGT 1 cut(s) 496
TaqI TCGA 3 cut(s) 327, 350, 499
TaqII GACCGA 1 cut(s) 1404
TasI AATT 6 cut(s) 16, 391, 622, 684, 771, 1186
TatI WGTACW 3 cut(s) 292, 615, 727
TfiI GAWTC 4 cut(s) 251, 886, 1075, 1255
Tru1I TTAA 4 cut(s) 243, 285, 630, 1217
Tru9I TTAA 4 cut(s) 243, 285, 630, 1217
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 1318
TseI GCWGC 4 cut(s) 142, 173, 214, 1108
Tsp45I GTSAC 1 cut(s) 1318
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 1387
XapI RAATTY 4 cut(s) 16, 622, 771, 1186
XceI RCATGY 4 cut(s) 136, 823, 1050, 1154
XmnI GAANNNNTTC 2 cut(s) 471, 1353
XspI CTAG 2 cut(s) 432, 555
ZrmI AGTACT 1 cut(s) 617
Zsp2I ATGCAT 3 cut(s) 138, 325, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.