Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004901

Physical Location & Seq

Genomic Coordinates Reverse (-)

81933427 .. 81938963

Gene Structure 5537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGCTTGTTCAAAAAACTAGGAAAAATCCTCATCACATTCTCTCTCTACACAAATTTCTTCAAAACATTTTGCGTTGGAATCTCTCTCTCTCTCTCTCTGGAAAATTCCGGTCTATGCTCATGGGTTCAAATTCAGTTGTCGATATGATAGAGGCCTCCTCGGGGGTTCATTTTTCTGGATTTCACATGGATGGTTTGCAGCAAAGACTGAAGATTGAGCAACCGACAACCTCAGCAAATGAAAACATGCATAAGCAGCCTTTTGTTATTGGGGTTGCTGGTGGGGCGGCTTCTGGTAAGACTACGGTTTGTGACATGATTATACAGCAGCTTCATGATCAGCGTGTTGTTCTTGTTAACCAGGACTCGTTTTATCATAATCTGACCAGCGAGGAACTTAAACGGGTTCATGAATACAACTTTGACCATCCTGATGCTTTCGACACAGAGAAACTATTATCTTATATGGACAAGTTGAAGCATGGGCAAGCAGTAGATATTCCAAACTATGATTTCAAAAGTTACAAAAATAATGTGTTTCCAGCTAGAAGGGTAAACCCTTCGGATGTCATAATTTTGGAAGGCATTCTTGTTTTCCATGATCCTCGTGTCCGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTGCGGTTGGCTAGGAGGATAAGGCGTGATACGGTTGAGAAGGGAAGGGATATTGGTACAGTTCTTGATCAGTATTCACAATTTGTAAAGCCTGCTTTTGATGATTTTATTCTTCCTACAAAAAAGTATGCCGATATCATCATACCTCGCGGTGGAGATAATCACATAGCTGTTGATTTGATTGTACAACATATCCGCACTAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCGAACTTATATGTCATTCATTCAACCTTTCAGATACGGGGTATGCATACCCTCATACGTGATTCTCAAACAACAAAGCATGATTTTGTTTTCTATTCCGACCGATTAATTCGTTTGGTTGTTGAGCATGGCCTGGGACACCTACCTTTTACTGAAAAGCAGGTCATCACTCCAACTGGGTCTGTGTATATTGGTGTGGATTTTTGTAAGAGGTTATGCGGTGTATCTGTCATTAGGAGTGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGCAAGATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATTTATGAAAAGCTACCCAATGACATTTCAGAGAGGCATGTATTGCTGTTGGATCCTATCTTGGGAACAGGGAATTCGGCTGTTCAAGCTATTTCTCTACTTCTAAAGAAGGGTGTACCAGAGTCCAACATCATATTTCTCAATCTCATATCTGCACCTCAAGGTGTGCATGTGGTCTGCAAACGCTTCCCCAGAATAAAGATTGTGACATCTGAGATTGAAACTGGTCTTAATGAAGACTTTCGTGTCGTACCTGGCATGGGTGAGTTTGGGGATAGATATTTTGGAACTGATGACGATGATCAAGAAGGGGTGCCTCCATCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

519

Amino Acids

58.64

Weight (kDa)

8.07

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	89 - 275	9.7e-48	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	305 - 506	2.5e-73	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810 AT1G55810
fragaria_vesca	FvH4_3g42151
malus_domestica	MD03G1037600.v1.1 MD11G1038800.v1.1
prunus_persica	Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1 Prupe.6G029400_v2.0.a1
pyrus_communis	pycom03g02880 pycom11g03280
rosa_chinensis	RchiOBHm_Chr5g0075381
rosa_laevigata	RLG00000036559
rosa_multiflora	Rmu_sc0000770.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006110
rosa_rugosa	Rorug05G0439200 Rorug05G0439300 Rorug05G0439300 Rorug05G0439400 Rorug05G0439500
rosa_samantha	Rh5BG517500 Rh5CG541100 Rh5DG531800
rosa_wichuraiana	Rw5G046020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1472
Acc36I	ACCTGC	1 cut(s)	1042
AccB1I	GGYRCC	1 cut(s)	1540
AccII	CGCG	1 cut(s)	807
AciI	CCGC	5 cut(s)	287, 661, 807, 853, 1110
AclWI	GGATC	3 cut(s)	596, 1274, 1287
AcsI	RAATTY	4 cut(s)	53, 104, 130, 1300
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	4 cut(s)	715, 843, 1344, 1479
AfiI	CCNNNNNNNGG	4 cut(s)	162, 809, 1289, 1487
AgsI	TTSAA	8 cut(s)	11, 62, 129, 478, 517, 915, 1313, 1448
AjnI	CCWGG	3 cut(s)	360, 1023, 1480
AluBI	AGCT	7 cut(s)	331, 545, 827, 862, 1225, 1240, 1316
AluI	AGCT	7 cut(s)	331, 545, 827, 862, 1225, 1240, 1316
AlwI	GGATC	3 cut(s)	596, 1274, 1287
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	153, 1021
ApeKI	GCWGC	4 cut(s)	199, 256, 328, 1222
ApoI	RAATTY	4 cut(s)	53, 104, 130, 1300
AseI	ATTAAT	1 cut(s)	998
Asp700I	GAANNNNTTC	2 cut(s)	585, 1467
AsuHPI	GGTGA	3 cut(s)	1145, 1220, 1502
AvaI	CYCGRG	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	1279
BanI	GGYRCC	1 cut(s)	1540
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	1470
BbvCI	CCTCAGC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	211, 268, 340, 1234
BccI	CCATC	3 cut(s)	185, 435, 1555
BciT130I	CCWGG	3 cut(s)	362, 1025, 1482
BclI	TGATCA	3 cut(s)	337, 724, 1528
BfaI	CTAG	3 cut(s)	18, 546, 669
BfuAI	ACCTGC	1 cut(s)	1042
BisI	GCNGC	5 cut(s)	200, 257, 288, 329, 1223
BlsI	GCNGC	5 cut(s)	201, 258, 289, 330, 1224
Bme1390I	CCNGG	3 cut(s)	362, 1025, 1482
BmeT110I	CYCGRG	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	1281, 1542
BmrFI	CCNGG	3 cut(s)	362, 1025, 1482
BmrI	ACTGGG	1 cut(s)	1077
BmsI	GCATC	2 cut(s)	424, 640
BmuI	ACTGGG	1 cut(s)	1077
BoxI	GACNNNNGTC	1 cut(s)	1215
BpiI	GAAGAC	1 cut(s)	1470
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	1371
BsaAI	YACGTR	1 cut(s)	950
BsaJI	CCNNGG	2 cut(s)	159, 1024
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 809, 1289, 1487
Bse1I	ACTGG	2 cut(s)	1072, 1456
BseBI	CCWGG	3 cut(s)	362, 1025, 1482
BseDI	CCNNGG	2 cut(s)	159, 1024
BseGI	GGATG	3 cut(s)	196, 427, 571
BseLI	CCNNNNNNNGG	4 cut(s)	162, 809, 1289, 1487
BseMII	CTCAG	2 cut(s)	246, 1431
BseNI	ACTGG	2 cut(s)	1072, 1456
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	211, 268, 340, 1234
BsgI	GTGCAG	1 cut(s)	1365
Bsh1236I	CGCG	1 cut(s)	807
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	2 cut(s)	155, 1023
BshNI	GGYRCC	1 cut(s)	1540
BsiEI	CGRYCG	1 cut(s)	994
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	1041
BslI	CCNNNNNNNGG	4 cut(s)	162, 809, 1289, 1487
BsmFI	GGGAC	1 cut(s)	1041
BsmI	GAATGC	2 cut(s)	585, 1153
BsnI	GGCC	2 cut(s)	155, 1023
BsoBI	CYCGRG	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	5 cut(s)	337, 601, 724, 1279, 1528
BspACI	CCGC	5 cut(s)	287, 661, 807, 853, 1110
BspANI	GGCC	2 cut(s)	155, 1023
BspCNI	CTCAG	2 cut(s)	245, 1432
BspFNI	CGCG	1 cut(s)	807
BspHI	TCATGA	2 cut(s)	334, 409
BspLI	GGNNCC	2 cut(s)	1281, 1542
BspMI	ACCTGC	1 cut(s)	1042
BspPI	GGATC	3 cut(s)	596, 1274, 1287
BspT107I	GGYRCC	1 cut(s)	1540
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	2 cut(s)	1072, 1456
BssECI	CCNNGG	2 cut(s)	159, 1024
BssMI	GATC	5 cut(s)	337, 601, 724, 1279, 1528
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	3 cut(s)	362, 1025, 1482
Bst4CI	ACNGT	3 cut(s)	307, 691, 718
BstAPI	GCANNNNNTGC	1 cut(s)	1270
BstAUI	TGTACA	1 cut(s)	841
BstBAI	YACGTR	1 cut(s)	950
BstC8I	GCNNGC	3 cut(s)	489, 750, 1158
BstDEI	CTNAG	3 cut(s)	232, 858, 1440
BstF5I	GGATG	3 cut(s)	196, 427, 571
BstFNI	CGCG	1 cut(s)	807
BstKTI	GATC	5 cut(s)	340, 604, 727, 1282, 1531
BstMBI	GATC	5 cut(s)	337, 601, 724, 1279, 1528
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	6 cut(s)	256, 284, 868, 1157, 1270, 1313
BstNI	CCWGG	3 cut(s)	362, 1025, 1482
BstNSI	RCATGY	4 cut(s)	250, 1164, 1268, 1400
BstPAI	GACNNNNGTC	1 cut(s)	1215
BstSCI	CCNGG	3 cut(s)	360, 1023, 1480
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	4 cut(s)	211, 268, 340, 1234
BstV2I	GAAGAC	1 cut(s)	1470
BstX2I	RGATCY	1 cut(s)	1279
BstYI	RGATCY	1 cut(s)	1279
BsuRI	GGCC	2 cut(s)	155, 1023
BtsCI	GGATG	3 cut(s)	196, 427, 571
BveI	ACCTGC	1 cut(s)	1042
Cac8I	GCNNGC	3 cut(s)	489, 750, 1158
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	2 cut(s)	334, 409
Csp6I	GTAC	4 cut(s)	714, 842, 1343, 1478
CviQI	GTAC	4 cut(s)	714, 842, 1343, 1478
DdeI	CTNAG	3 cut(s)	232, 858, 1440
DpnI	GATC	5 cut(s)	339, 603, 726, 1281, 1530
DpnII	GATC	5 cut(s)	337, 601, 724, 1279, 1528
DrdI	GACNNNNNNGTC	1 cut(s)	1472
DseDI	GACNNNNNNGTC	1 cut(s)	1472
Eco147I	AGGCCT	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	1300
EcoRII	CCWGG	3 cut(s)	360, 1023, 1480
EcoRV	GATATC	1 cut(s)	793
EcoT22I	ATGCAT	2 cut(s)	252, 939
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	1041
FbaI	TGATCA	3 cut(s)	337, 724, 1528
Fnu4HI	GCNGC	5 cut(s)	200, 257, 288, 329, 1223
FokI	GGATG	3 cut(s)	203, 414, 578
Fsp4HI	GCNGC	5 cut(s)	200, 257, 288, 329, 1223
FspBI	CTAG	3 cut(s)	18, 546, 669
GluI	GCNGC	5 cut(s)	200, 257, 288, 329, 1223
HaeIII	GGCC	2 cut(s)	155, 1023
HapII	CCGG	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	5 cut(s)	79, 365, 953, 1189, 1349
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	3 cut(s)	1145, 1220, 1502
Hpy166II	GTNNAC	3 cut(s)	358, 556, 1343
Hpy188I	TCNGA	8 cut(s)	384, 565, 614, 894, 924, 991, 1258, 1441
Hpy188III	TCNNGA	8 cut(s)	99, 177, 335, 410, 431, 722, 1177, 1532
Hpy8I	GTNNAC	3 cut(s)	358, 556, 1343
HpyAV	CCTTC	8 cut(s)	543, 570, 575, 691, 696, 1199, 1330, 1529
HpyCH4III	ACNGT	3 cut(s)	307, 691, 718
HpyCH4IV	ACGT	1 cut(s)	949
HpyCH4V	TGCA	6 cut(s)	199, 250, 937, 1382, 1396, 1407
HpyF10VI	GCNNNNNNNGC	6 cut(s)	256, 284, 868, 1157, 1270, 1313
HpyF3I	CTNAG	3 cut(s)	232, 858, 1440
HpySE526I	ACGT	1 cut(s)	949
Ksp22I	TGATCA	3 cut(s)	337, 724, 1528
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	337, 601, 724, 1279, 1528
Lsp1109I	GCAGC	4 cut(s)	211, 268, 340, 1234
LweI	GCATC	2 cut(s)	424, 640
MaeI	CTAG	3 cut(s)	18, 546, 669
MaeII	ACGT	1 cut(s)	949
MaeIII	GTNAC	4 cut(s)	311, 521, 1208, 1432
MalI	GATC	5 cut(s)	339, 603, 726, 1281, 1530
MboI	GATC	5 cut(s)	337, 601, 724, 1279, 1528
MboII	GAAGA	5 cut(s)	50, 223, 643, 761, 1475
MflI	RGATCY	1 cut(s)	1279
MluCI	AATT	8 cut(s)	53, 104, 130, 573, 737, 999, 1227, 1300
MlyI	GAGTC	2 cut(s)	359, 1358
MmeI	TCCRAC	5 cut(s)	56, 1014, 1088, 1257, 1377
Mph1103I	ATGCAT	2 cut(s)	252, 939
MroXI	GAANNNNTTC	2 cut(s)	585, 1467
MseI	TTAA	4 cut(s)	357, 399, 998, 1458
MslI	CAYNNNNRTG	2 cut(s)	189, 432
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	362, 1025, 1482
Mva1269I	GAATGC	2 cut(s)	585, 1153
MvaI	CCWGG	3 cut(s)	362, 1025, 1482
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	6 cut(s)	256, 284, 868, 1157, 1270, 1313
NdeII	GATC	5 cut(s)	337, 601, 724, 1279, 1528
NlaIV	GGNNCC	2 cut(s)	1281, 1542
NmuCI	GTSAC	3 cut(s)	311, 1208, 1432
NsiI	ATGCAT	2 cut(s)	252, 939
NspI	RCATGY	4 cut(s)	250, 1164, 1268, 1400
PagI	TCATGA	2 cut(s)	334, 409
PceI	AGGCCT	1 cut(s)	155
PctI	GAATGC	2 cut(s)	585, 1153
PdmI	GAANNNNTTC	2 cut(s)	585, 1467
PfeI	GAWTC	3 cut(s)	79, 953, 1189
PkrI	GCNGC	5 cut(s)	201, 258, 289, 330, 1224
PleI	GAGTC	2 cut(s)	359, 1357
PpsI	GAGTC	2 cut(s)	359, 1357
Ppu21I	YACGTR	1 cut(s)	950
PshAI	GACNNNNGTC	1 cut(s)	1215
PshBI	ATTAAT	1 cut(s)	998
Psp6I	CCWGG	3 cut(s)	360, 1023, 1480
PspGI	CCWGG	3 cut(s)	360, 1023, 1480
PspN4I	GGNNCC	2 cut(s)	1281, 1542
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	1279
RsaI	GTAC	4 cut(s)	715, 843, 1344, 1479
RsaNI	GTAC	4 cut(s)	714, 842, 1343, 1478
RseI	CAYNNNNRTG	2 cut(s)	189, 432
SaqAI	TTAA	4 cut(s)	357, 399, 998, 1458
SatI	GCNGC	5 cut(s)	200, 257, 288, 329, 1223
Sau3AI	GATC	5 cut(s)	337, 601, 724, 1279, 1528
SchI	GAGTC	2 cut(s)	359, 1358
ScrFI	CCNGG	3 cut(s)	362, 1025, 1482
SfaNI	GCATC	2 cut(s)	424, 640
SmiMI	CAYNNNNRTG	2 cut(s)	189, 432
SmlI	CTYRAG	1 cut(s)	1386
SmoI	CTYRAG	1 cut(s)	1386
Sse9I	AATT	8 cut(s)	53, 104, 130, 573, 737, 999, 1227, 1300
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	5 cut(s)	287, 661, 807, 853, 1110
SspMI	CTAG	3 cut(s)	18, 546, 669
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	360, 1023, 1480
TaaI	ACNGT	3 cut(s)	307, 691, 718
TaiI	ACGT	1 cut(s)	952
TaqI	TCGA	2 cut(s)	141, 441
TaqII	GACCGA	1 cut(s)	1008
TasI	AATT	8 cut(s)	53, 104, 130, 573, 737, 999, 1227, 1300
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	79, 953, 1189
Tru1I	TTAA	4 cut(s)	357, 399, 998, 1458
Tru9I	TTAA	4 cut(s)	357, 399, 998, 1458
TseFI	GTSAC	3 cut(s)	311, 1208, 1432
TseI	GCWGC	4 cut(s)	199, 256, 328, 1222
Tsp45I	GTSAC	3 cut(s)	311, 1208, 1432
VspI	ATTAAT	1 cut(s)	998
XapI	RAATTY	4 cut(s)	53, 104, 130, 1300
XceI	RCATGY	4 cut(s)	250, 1164, 1268, 1400
XmnI	GAANNNNTTC	2 cut(s)	585, 1467
XspI	CTAG	3 cut(s)	18, 546, 669
Zsp2I	ATGCAT	2 cut(s)	252, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.