AT1G56110

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014044
Physical Location & Seq
Reverse (-)
20984273 .. 20986952
2680 bp
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UTR
Exon/CDS
Intron
AT1G56110.1

Sequence Viewer

Length: 1569 bp
ATGGCGATGTATGTTATCTACGAGTCTTCTTCCGGCTATGGTCTCTTCGAGGTTCACGGACTAGATGAGATCGGACAGAACACTGAGGCGGTTCGGACTTCTGTCTCCGACCTCAGTCGCTTTGGCCGTGTTGTTCAGCTCACAGCGTTTCATCCCTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGGTGTTATGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGTCAAGGAGGGAAAGAAACCCAAGTTCAGTTTAGGATTGGCTGAGCCTAAACTCGGTTCACATATATTTGAAGCTACTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAGCCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGGTTATTCAAGCTATCTTCATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGAGAGTCAGGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAACTATCTTTACGCCCGTGTTTCAAAGATGATTGATGACAAGTCAAAGTTGACTGAAGATCACATCCCCATGCTTACTGAAGTCTTAGGGGATGAAGATAAGGCAAAGGAGGTCATCGAAGCTGGAAAAGCATCCATGGGCTCGGATTTATCACCGCTTGACTTAATCAACGTACAGACCTTTGCTCAGAAAGTTATGGACCTTGCTGACTACAGGAAGAAGCTCTATGATTATCTTGTCACTAAGATGAGCGACATTGCCCCTAATTTGGCTGCTTTGATTGGAGAAATGGTCGGTGCCCGTTTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCCACCCTCCAGATTCTTGGAGCCGAGAAGGCTCTTTTCAGGGCACTTAAAACACGTGGAAACACTCCCAAGTATGGATTGATTTTCCATTCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGATGGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAAGGCTAGAATTTTATGACAAAGGTGTTGCCCCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAATCTAAAGCAAGAAGAGGAAGGGAAGGAGCCAGTTGATGCCTCGGTGAAGAAAAGCAAGAAGAAGAAGGCAAAGGGTGAAGAAGAAGAAGAGGTGGTGGCAATGGAGGAGGACAAGTCAGAGAAAAAGAAGAAGAAAGAGAAGAGGAAGATGGAGACTGCAGAGGAGAACGAGAAATCAGAGAAGAAGAAGACAAAGAAGAGTAAAGCTGGAGGAGAAGAGGAGACTGATGATGGTCACAGCACCAAGAAGAAGAAGAAGAAGTCTAAGAGCGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

522

Amino Acids

58.67

Weight (kDa)

8.78

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOP5NT PF08156 4 - 69 5e-22 NOP5NT (NUC127) domain
Nop PF01798 177 - 409 2.9e-87 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56110 AT3G12860
fragaria_vesca FvH4_5g07871
malus_domestica MD06G1145200.v1.1 MD14G1159900.v1.1
prunus_persica Prupe.5G153500_v2.0.a1 Prupe.5G153500_v2.0.a1
pyrus_communis pycom06g13450
rosa_chinensis RchiOBHm_Chr7g0190581
rosa_laevigata RLG00000004513
rosa_multiflora Rmu_sc0036974.1_g000001
rosa_roxburghii Rroxscaffold_3G00264490
rosa_rugosa Rorug06G0505400
rosa_samantha Rh7BG114800 Rh7CG116900 Rh7DG116000
rosa_wichuraiana Rw7G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 923
AccII CGCG 1 cut(s) 1203
AciI CCGC 2 cut(s) 89, 782
AcoI YGGCCR 2 cut(s) 124, 1081
AcsI RAATTY 1 cut(s) 1226
AcuI CTGAAG 3 cut(s) 222, 702, 726
AcvI CACGTG 1 cut(s) 1034
AfaI GTAC 1 cut(s) 801
AfeI AGCGCT 1 cut(s) 1561
AfiI CCNNNNNNNGG 3 cut(s) 308, 895, 1052
AflIII ACRYGT 1 cut(s) 1031
AgsI TTSAA 6 cut(s) 244, 326, 434, 487, 518, 651
AhlI ACTAGT 1 cut(s) 607
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
Alw21I GWGCWC 1 cut(s) 1139
Alw26I GTCTC 5 cut(s) 47, 109, 202, 1436, 1505
Aor51HI AGCGCT 1 cut(s) 1561
AoxI GGCC 3 cut(s) 124, 1081, 1105
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 1 cut(s) 1226
AspLEI GCGC 1 cut(s) 1562
AspS9I GGNCC 2 cut(s) 826, 1105
AsuC2I CCSGG 1 cut(s) 1150
AsuHPI GGTGA 7 cut(s) 437, 490, 771, 1202, 1291, 1345, 1376
AvaII GGWCC 1 cut(s) 826
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 928, 1024
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 770
BbrPI CACGTG 1 cut(s) 1034
BbsI GAAGAC 2 cut(s) 18, 1484
Bbv12I GWGCWC 1 cut(s) 1139
BbvI GCAGC 1 cut(s) 886
BccI CCATC 4 cut(s) 982, 1163, 1432, 1514
BceAI ACGGC 3 cut(s) 111, 179, 1092
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 1 cut(s) 1150
BcoDI GTCTC 5 cut(s) 47, 109, 202, 1436, 1505
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 3 cut(s) 62, 608, 1223
BfmI CTRYAG 4 cut(s) 463, 838, 1140, 1446
BfoI RGCGCY 1 cut(s) 1563
BglI GCCNNNNNGGC 1 cut(s) 1007
BisI GCNGC 1 cut(s) 900
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 901
Bme1390I CCNGG 2 cut(s) 423, 1150
Bme18I GGWCC 1 cut(s) 826
BmgT120I GGNCC 2 cut(s) 826, 1105
BmiI GGNNCC 3 cut(s) 925, 1000, 1317
BmrFI CCNGG 2 cut(s) 423, 1150
BmsI GCATC 5 cut(s) 163, 767, 1097, 1154, 1315
BoxI GACNNNNGTC 2 cut(s) 101, 114
BpiI GAAGAC 2 cut(s) 18, 1484
BpmI CTGGAG 3 cut(s) 257, 971, 1518
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 1150
BsaAI YACGTR 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 474, 762, 1329
BsaXI ACNNNNNCTCC 4 cut(s) 903, 933, 1388, 1418
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 895, 1052
Bse1I ACTGG 1 cut(s) 1319
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 3 cut(s) 358, 882, 1395
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 474, 762, 1329
BseGI GGATG 6 cut(s) 151, 690, 724, 758, 1145, 1270
BseLI CCNNNNNNNGG 3 cut(s) 308, 895, 1052
BseMI GCAATG 3 cut(s) 358, 882, 1395
BseMII CTCAG 6 cut(s) 75, 127, 288, 388, 455, 827
BseNI ACTGG 1 cut(s) 1319
BseRI GAGGAG 4 cut(s) 1409, 1466, 1515, 1523
BseSI GKGCMC 2 cut(s) 928, 1024
BseXI GCAGC 1 cut(s) 886
Bsh1236I CGCG 1 cut(s) 1203
BshFI GGCC 3 cut(s) 126, 1083, 1107
BshNI GGYRCC 1 cut(s) 923
BsiHKAI GWGCWC 1 cut(s) 1139
BsiSI CCGG 2 cut(s) 33, 1150
BslI CCNNNNNNNGG 3 cut(s) 308, 895, 1052
BsmAI GTCTC 5 cut(s) 47, 109, 202, 1436, 1505
BsmBI CGTCTC 1 cut(s) 202
BsnI GGCC 3 cut(s) 126, 1083, 1107
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 4 cut(s) 770, 928, 1024, 1139
Bsp143I GATC 3 cut(s) 69, 427, 685
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 762
Bsp68I TCGCGA 1 cut(s) 1203
BspACI CCGC 2 cut(s) 89, 782
BspANI GGCC 3 cut(s) 126, 1083, 1107
BspCNI CTCAG 6 cut(s) 76, 126, 289, 387, 454, 826
BspFNI CGCG 1 cut(s) 1203
BspLI GGNNCC 3 cut(s) 925, 1000, 1317
BspMAI CTGCAG 1 cut(s) 1450
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 3 cut(s) 358, 882, 1395
BsrI ACTGG 1 cut(s) 1319
BssECI CCNNGG 3 cut(s) 474, 762, 1329
BssMI GATC 3 cut(s) 69, 427, 685
BssT1I CCWWGG 2 cut(s) 474, 762
Bst2UI CCWGG 1 cut(s) 423
Bst6I CTCTTC 6 cut(s) 50, 1296, 1371, 1424, 1481, 1500
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstBAI YACGTR 1 cut(s) 1034
BstC8I GCNNGC 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 762
BstF5I GGATG 6 cut(s) 151, 690, 724, 758, 1145, 1270
BstFNI CGCG 1 cut(s) 1203
BstH2I RGCGCY 1 cut(s) 1563
BstHHI GCGC 1 cut(s) 1562
BstKTI GATC 3 cut(s) 72, 430, 688
BstMAI GTCTC 5 cut(s) 47, 109, 202, 1436, 1505
BstMBI GATC 3 cut(s) 69, 427, 685
BstMWI GCNNNNNNNGC 6 cut(s) 173, 538, 755, 1007, 1172, 1181
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 944
BstPAI GACNNNNGTC 2 cut(s) 101, 114
BstSCI CCNGG 2 cut(s) 421, 1148
BstSFI CTRYAG 4 cut(s) 463, 838, 1140, 1446
BstSLI GKGCMC 2 cut(s) 928, 1024
BstUI CGCG 1 cut(s) 1203
BstV1I GCAGC 1 cut(s) 886
BstV2I GAAGAC 2 cut(s) 18, 1484
BstXI CCANNNNNNTGG 1 cut(s) 995
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 3 cut(s) 126, 1083, 1107
BtgI CCRYGG 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 6 cut(s) 151, 690, 724, 758, 1145, 1270
BtsIMutI CAGTG 1 cut(s) 81
BtuMI TCGCGA 1 cut(s) 1203
Cac8I GCNNGC 1 cut(s) 389
CfoI GCGC 1 cut(s) 1562
Cfr13I GGNCC 2 cut(s) 826, 1105
Csp6I GTAC 1 cut(s) 800
CviAII CATG 7 cut(s) 342, 508, 529, 568, 697, 763, 941
CviQI GTAC 1 cut(s) 800
DpnI GATC 3 cut(s) 71, 429, 687
DpnII GATC 3 cut(s) 69, 427, 685
EaeI YGGCCR 2 cut(s) 124, 1081
Eam1104I CTCTTC 6 cut(s) 50, 1296, 1371, 1424, 1481, 1500
EarI CTCTTC 6 cut(s) 50, 1296, 1371, 1424, 1481, 1500
Eco130I CCWWGG 2 cut(s) 474, 762
Eco24I GRGCYC 1 cut(s) 770
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 826
Eco47III AGCGCT 1 cut(s) 1561
Eco57I CTGAAG 3 cut(s) 222, 702, 726
Eco72I CACGTG 1 cut(s) 1034
Eco81I CCTNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 2 cut(s) 474, 762
EcoT38I GRGCYC 1 cut(s) 770
ErhI CCWWGG 2 cut(s) 474, 762
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 7 cut(s) 345, 511, 532, 571, 700, 766, 944
FatI CATG 7 cut(s) 341, 507, 528, 567, 696, 762, 940
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 6 cut(s) 138, 677, 731, 745, 1132, 1277
FriOI GRGCYC 1 cut(s) 770
Fsp4HI GCNGC 1 cut(s) 900
FspBI CTAG 3 cut(s) 62, 608, 1223
GlaI GCGC 1 cut(s) 1561
GluI GCNGC 1 cut(s) 900
GsuI CTGGAG 3 cut(s) 257, 971, 1518
HaeII RGCGCY 1 cut(s) 1563
HaeIII GGCC 3 cut(s) 126, 1083, 1107
HapII CCGG 2 cut(s) 33, 1150
HhaI GCGC 1 cut(s) 1562
Hin1II CATG 7 cut(s) 345, 511, 532, 571, 700, 766, 944
Hin6I GCGC 1 cut(s) 1560
HinP1I GCGC 1 cut(s) 1560
HincII GTYRAC 3 cut(s) 190, 493, 678
HindII GTYRAC 3 cut(s) 190, 493, 678
HindIII AAGCTT 1 cut(s) 1196
HinfI GANTC 6 cut(s) 23, 161, 244, 573, 991, 1288
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 2 cut(s) 33, 1150
HphI GGTGA 7 cut(s) 437, 490, 771, 1202, 1291, 1345, 1376
Hpy166II GTNNAC 5 cut(s) 55, 190, 314, 493, 678
Hpy188III TCNNGA 6 cut(s) 170, 236, 365, 431, 988, 1202
Hpy8I GTNNAC 5 cut(s) 55, 190, 314, 493, 678
HpyAV CCTTC 7 cut(s) 197, 1000, 1084, 1267, 1301, 1306, 1348
HpyCH4IV ACGT 3 cut(s) 798, 1033, 1260
HpyCH4V TGCA 3 cut(s) 1127, 1175, 1448
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 538, 755, 1007, 1172, 1181
HpySE526I ACGT 3 cut(s) 798, 1033, 1260
Hsp92II CATG 7 cut(s) 345, 511, 532, 571, 700, 766, 944
HspAI GCGC 1 cut(s) 1560
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 69, 427, 685
LmnI GCTCC 2 cut(s) 998, 1315
Lsp1109I GCAGC 1 cut(s) 886
LweI GCATC 5 cut(s) 163, 767, 1097, 1154, 1315
MaeI CTAG 3 cut(s) 62, 608, 1223
MaeII ACGT 3 cut(s) 798, 1033, 1260
MaeIII GTNAC 2 cut(s) 865, 1523
MalI GATC 3 cut(s) 71, 429, 687
MboI GATC 3 cut(s) 69, 427, 685
MhlI GDGCHC 4 cut(s) 770, 928, 1024, 1139
MluCI AATT 3 cut(s) 556, 892, 1226
MlyI GAGTC 3 cut(s) 32, 170, 582
MmeI TCCRAC 1 cut(s) 132
MseI TTAA 4 cut(s) 416, 492, 791, 1026
MslI CAYNNNNRTG 2 cut(s) 695, 872
MspI CCGG 2 cut(s) 33, 1150
MspR9I CCNGG 2 cut(s) 423, 1150
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 1203
MwoI GCNNNNNNNGC 6 cut(s) 173, 538, 755, 1007, 1172, 1181
NciI CCSGG 1 cut(s) 1150
NcoI CCATGG 1 cut(s) 762
NdeII GATC 3 cut(s) 69, 427, 685
NlaIII CATG 7 cut(s) 345, 511, 532, 571, 700, 766, 944
NlaIV GGNNCC 3 cut(s) 925, 1000, 1317
NmeAIII GCCGAG 2 cut(s) 1027, 1109
NmuCI GTSAC 2 cut(s) 865, 1523
NruI TCGCGA 1 cut(s) 1203
NspI RCATGY 1 cut(s) 944
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 3 cut(s) 244, 991, 1288
PfoI TCCNGGA 1 cut(s) 1148
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 3 cut(s) 31, 169, 581
PmaCI CACGTG 1 cut(s) 1034
PmlI CACGTG 1 cut(s) 1034
PpsI GAGTC 3 cut(s) 31, 169, 581
Ppu21I YACGTR 1 cut(s) 1034
PshAI GACNNNNGTC 2 cut(s) 101, 114
Psp6I CCWGG 1 cut(s) 421
PspCI CACGTG 1 cut(s) 1034
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 3 cut(s) 925, 1000, 1317
PspPI GGNCC 2 cut(s) 826, 1105
PstI CTGCAG 1 cut(s) 1450
RruI TCGCGA 1 cut(s) 1203
RsaI GTAC 1 cut(s) 801
RsaNI GTAC 1 cut(s) 800
RseI CAYNNNNRTG 2 cut(s) 695, 872
SaqAI TTAA 4 cut(s) 416, 492, 791, 1026
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 3 cut(s) 69, 427, 685
Sau96I GGNCC 2 cut(s) 826, 1105
SchI GAGTC 3 cut(s) 32, 170, 582
ScrFI CCNGG 2 cut(s) 423, 1150
SduI GDGCHC 4 cut(s) 770, 928, 1024, 1139
SfaNI GCATC 5 cut(s) 163, 767, 1097, 1154, 1315
SfcI CTRYAG 4 cut(s) 463, 838, 1140, 1446
SinI GGWCC 1 cut(s) 826
SmiMI CAYNNNNRTG 2 cut(s) 695, 872
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 3 cut(s) 556, 892, 1226
SsiI CCGC 2 cut(s) 89, 782
SspMI CTAG 3 cut(s) 62, 608, 1223
StyD4I CCNGG 2 cut(s) 421, 1148
StyI CCWWGG 2 cut(s) 474, 762
TaiI ACGT 3 cut(s) 801, 1036, 1263
TaqI TCGA 3 cut(s) 48, 171, 744
TasI AATT 3 cut(s) 556, 892, 1226
TfiI GAWTC 3 cut(s) 244, 991, 1288
Tru1I TTAA 4 cut(s) 416, 492, 791, 1026
Tru9I TTAA 4 cut(s) 416, 492, 791, 1026
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 865, 1523
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 2 cut(s) 865, 1523
TspDTI ATGAA 5 cut(s) 140, 517, 735, 1066, 1286
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 826
XapI RAATTY 1 cut(s) 1226
XceI RCATGY 1 cut(s) 944
XspI CTAG 3 cut(s) 62, 608, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.