Prupe.5G153500_v2.0.a1

Nucleolar protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014044
Physical Location & Seq
Forward (+)
13808053 .. 13811801
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G153500.2

Sequence Viewer

Length: 1650 bp
ATGGCGCTTTACCTGCTCTATGAAGCAGCTTCAGGCTACTCTCTGTTCCTAGCTCATGGCATCGACGAAATCGGTCAGAACACCGACGCGGTTCGGAGCTCCGTTTCTGACCTAAACCGGTTCGGGAAGGTGGTCCAGCTCACAGCTTTCCACCCATTTGAGTCTGCCCTCGATGCCCTTAACCAATGCAACTCAATCTCTGAAGGGGTTATGACTGATGAGTTGAGAAACTTTTTGGAAATTAATCTCCCAAAAGTGAAGGATGGTAAGAAGCCAAAGTTCAGTTTGGGGTTGGCTGAACCTAAGATCGGGTCTCACATCTTTGAAGCGACAAAAATTCCTTGCCAAAGTAATGATTTTGTCCTTGAGCTGATTCGTGGAGTGCGGCTACATTTTGATAGGTTTATCAAGGACCTGAAGCCTGGGGACTTAGAGAAAGCCCAGCTTGGTCTAGGGCACAGTTACAGCAGGGCCAAGGTCAAGTTCAATGTGAACCGCGTTGACAATATGGTGATTCAAGCAATCTTCCTTTTAGATACCCTTGATAAGGATGTCAATTCCTTCTCCATGAGAGTCAGAGAATGGTACTCTTGGCATTTTCCTGAATTGGTGAAGATTGTCAATGACAATTATCTCTATGCTAAAGTGTCAAAATTTATAGAGGACAAGTCAACATTGTCTGAAGACAAACTTCCAGAATTGACTGACATTGTTGGAGATGAAGATAAGGCAAAGGAGATTATAGAAGCTGCCAAAGCATCCATGGGTCAGGATTTGTCTCCAATTGATTTGATTAATGTTCAGCAATTTGCACAGAGGGTGATGGACCTATCTGAGTACAGGAAAAGGCTTTATGACTATCTGGTTACTAAAATGAATGACATTGCACCCAATTTGGCCTCCTTAATTGGTGAAGTAGTTGGAGCGCGTTTGATTTCTCATGCTGGTAGTCTTACAAATTTGGCTAAATGCCCTTCTTCAACCCTTCAGATCCTCGGGGCAGAGAAAGCTCTCTTCAGGGCATTAAAAACCAGGGGAAACACACCCAAATATGGACTGATATTTCATTCATCTTTTATTGGTCGAGCATCTGCAAGGAACAAGGGCCGAATGGCTCGTTATCTTGCAAACAAGTGCTCTATTGCTTCTCGCATTGATTGCTTTGCAGATAGTAGCACTACTGTTTTTGGGGAGAAACTTCGTGAGCAAGTTGAGGAGCGACTTGACTTTTATGACAAGGGTGTTGCACCTCGCAAAAACATTGATGTCATGAAATCTGCAATCGAGAATACTCAAATCAAAGAGATGGAGACAGAAGAAGTTCCTACCGAAGCTTCAGGGAAGAAAAGCAAGAAGAAGAAGTCAAAGGCTGCAGCTAATGGTGATGGGGCTGTGGATGAACCAGCTGAGACTACAAATGGAGATGCTGGTGAGGGTAAATCTGAAAAGAAGAAGAAGAAGGACAAGCGGAAGTTGGATCAGGAGGATCAACCCATGGAGGATGCGAATAATGGGCATGTTGAGGAGGATGGAGCAGCCAAACAGAAGAAAAAGAAGAAGAGTAAACATGAAAATGGAGAGGATCTACAGGCTGCCAGCGAAGTCAAGAAGAAGAAGAAGAAAAAATCAAGAAGTGAGGACACTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

550

Amino Acids

61.32

Weight (kDa)

8.67

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56110 AT3G12860
fragaria_vesca FvH4_5g07871
malus_domestica MD06G1145200.v1.1 MD14G1159900.v1.1
prunus_persica Prupe.5G153500_v2.0.a1 Prupe.5G153500_v2.0.a1
pyrus_communis pycom06g13450
rosa_chinensis RchiOBHm_Chr7g0190581
rosa_laevigata RLG00000004513
rosa_multiflora Rmu_sc0036974.1_g000001
rosa_roxburghii Rroxscaffold_3G00264490
rosa_rugosa Rorug06G0505400
rosa_samantha Rh7BG114800 Rh7CG116900 Rh7DG116000
rosa_wichuraiana Rw7G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
AccII CGCG 3 cut(s) 89, 498, 928
AciI CCGC 4 cut(s) 89, 385, 496, 1468
AclWI GGATC 4 cut(s) 985, 1485, 1494, 1590
AcsI RAATTY 3 cut(s) 336, 653, 958
AcuI CTGAAG 7 cut(s) 15, 222, 437, 702, 971, 1000, 1320
AfaI GTAC 2 cut(s) 587, 839
AfiI CCNNNNNNNGG 3 cut(s) 308, 547, 1052
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 4 cut(s) 326, 487, 518, 981
AjnI CCWGG 2 cut(s) 421, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
Alw21I GWGCWC 2 cut(s) 101, 1139
Alw26I GTCTC 4 cut(s) 318, 783, 1304, 1403
AlwI GGATC 4 cut(s) 985, 1485, 1494, 1590
Ama87I CYCGRG 1 cut(s) 995
AoxI GGCC 3 cut(s) 471, 897, 1105
ApeKI GCWGC 6 cut(s) 26, 749, 1370, 1373, 1535, 1592
ApoI RAATTY 3 cut(s) 336, 653, 958
AseI ATTAAT 2 cut(s) 243, 795
AsiGI ACCGGT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 1320
AspLEI GCGC 2 cut(s) 7, 928
AspS9I GGNCC 5 cut(s) 133, 412, 471, 826, 1105
AsuHPI GGTGA 6 cut(s) 523, 622, 832, 923, 1394, 1442
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 3 cut(s) 133, 412, 826
BaeGI GKGCMC 1 cut(s) 459
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 101, 1139
BbvI GCAGC 6 cut(s) 38, 736, 1357, 1385, 1547, 1579
BccI CCATC 5 cut(s) 257, 817, 1300, 1379, 1523
BciT130I CCWGG 2 cut(s) 423, 1033
BcoDI GTCTC 4 cut(s) 318, 783, 1304, 1403
BfaI CTAG 2 cut(s) 50, 452
BfmI CTRYAG 2 cut(s) 1371, 1586
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 21
BisI GCNGC 7 cut(s) 27, 386, 750, 1371, 1374, 1536, 1593
BlsI GCNGC 7 cut(s) 28, 387, 751, 1372, 1375, 1537, 1594
Bme1390I CCNGG 2 cut(s) 423, 1033
Bme18I GGWCC 3 cut(s) 133, 412, 826
BmeT110I CYCGRG 1 cut(s) 995
BmgT120I GGNCC 5 cut(s) 133, 412, 471, 826, 1105
BmrFI CCNGG 2 cut(s) 423, 1033
BmsI GCATC 6 cut(s) 69, 163, 767, 1097, 1414, 1492
BpiI GAAGAC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 6 cut(s) 422, 474, 762, 994, 1032, 1494
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 547, 1052
Bse118I RCCGGY 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 2 cut(s) 423, 1033
BseDI CCNNGG 6 cut(s) 422, 474, 762, 994, 1032, 1494
BseGI GGATG 6 cut(s) 268, 556, 758, 1402, 1507, 1534
BseLI CCNNNNNNNGG 3 cut(s) 308, 547, 1052
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 2 cut(s) 825, 1398
BseRI GAGGAG 2 cut(s) 1229, 1538
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 6 cut(s) 38, 736, 1357, 1385, 1547, 1579
BseYI CCCAGC 1 cut(s) 441
Bsh1236I CGCG 3 cut(s) 89, 498, 928
BshFI GGCC 3 cut(s) 473, 899, 1107
BshTI ACCGGT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 101, 1139
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 3 cut(s) 308, 547, 1052
BsmAI GTCTC 4 cut(s) 318, 783, 1304, 1403
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 3 cut(s) 473, 899, 1107
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 995
Bsp1286I GDGCHC 3 cut(s) 101, 459, 1139
Bsp143I GATC 5 cut(s) 306, 990, 1477, 1486, 1582
Bsp19I CCATGG 2 cut(s) 762, 1494
BspACI CCGC 4 cut(s) 89, 385, 496, 1468
BspANI GGCC 3 cut(s) 473, 899, 1107
BspCNI CTCAG 2 cut(s) 826, 1399
BspFNI CGCG 3 cut(s) 89, 498, 928
BspHI TCATGA 1 cut(s) 1269
BspMAI CTGCAG 1 cut(s) 1375
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 4 cut(s) 985, 1485, 1494, 1590
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 6 cut(s) 422, 474, 762, 994, 1032, 1494
BssMI GATC 5 cut(s) 306, 990, 1477, 1486, 1582
BssT1I CCWWGG 3 cut(s) 474, 762, 1494
Bst2UI CCWGG 2 cut(s) 423, 1033
Bst4CI ACNGT 2 cut(s) 461, 1183
Bst6I CTCTTC 2 cut(s) 1019, 1553
BstAPI GCANNNNNTGC 1 cut(s) 1158
BstC8I GCNNGC 1 cut(s) 1597
BstDEI CTNAG 4 cut(s) 303, 430, 834, 1407
BstDSI CCRYGG 2 cut(s) 762, 1494
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 6 cut(s) 268, 556, 758, 1402, 1507, 1534
BstFNI CGCG 3 cut(s) 89, 498, 928
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 928
BstKTI GATC 5 cut(s) 309, 993, 1480, 1489, 1585
BstMAI GTCTC 4 cut(s) 318, 783, 1304, 1403
BstMBI GATC 5 cut(s) 306, 990, 1477, 1486, 1582
BstMWI GCNNNNNNNGC 5 cut(s) 13, 173, 755, 1007, 1158
BstNI CCWGG 2 cut(s) 423, 1033
BstNSI RCATGY 1 cut(s) 1520
BstSCI CCNGG 2 cut(s) 421, 1031
BstSFI CTRYAG 2 cut(s) 1371, 1586
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 3 cut(s) 89, 498, 928
BstV1I GCAGC 6 cut(s) 38, 736, 1357, 1385, 1547, 1579
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 990, 1582
BstYI RGATCY 2 cut(s) 990, 1582
BsuRI GGCC 3 cut(s) 473, 899, 1107
BtgI CCRYGG 2 cut(s) 762, 1494
BtsCI GGATG 6 cut(s) 268, 556, 758, 1402, 1507, 1534
BtsIMutI CAGTG 1 cut(s) 1641
BveI ACCTGC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 1597
CciI TCATGA 1 cut(s) 1269
CfoI GCGC 2 cut(s) 7, 928
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 5 cut(s) 133, 412, 471, 826, 1105
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 586, 838
CspAI ACCGGT 1 cut(s) 117
CviAII CATG 8 cut(s) 56, 568, 763, 941, 1270, 1495, 1517, 1568
CviQI GTAC 2 cut(s) 586, 838
DdeI CTNAG 4 cut(s) 303, 430, 834, 1407
DpnI GATC 5 cut(s) 308, 992, 1479, 1488, 1584
DpnII GATC 5 cut(s) 306, 990, 1477, 1486, 1582
Eam1104I CTCTTC 2 cut(s) 1019, 1553
EarI CTCTTC 2 cut(s) 1019, 1553
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 3 cut(s) 474, 762, 1494
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 3 cut(s) 133, 412, 826
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 7 cut(s) 15, 222, 437, 702, 971, 1000, 1320
Eco88I CYCGRG 1 cut(s) 995
EcoICRI GAGCTC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 421, 1031
EcoT14I CCWWGG 3 cut(s) 474, 762, 1494
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 3 cut(s) 474, 762, 1494
FaeI CATG 8 cut(s) 59, 571, 766, 944, 1273, 1498, 1520, 1571
FalI AAGNNNNNCTT 4 cut(s) 429, 461, 675, 707
FaqI GGGAC 1 cut(s) 440
FatI CATG 8 cut(s) 55, 567, 762, 940, 1269, 1494, 1516, 1567
Fnu4HI GCNGC 7 cut(s) 27, 386, 750, 1371, 1374, 1536, 1593
FokI GGATG 6 cut(s) 275, 563, 745, 1409, 1514, 1541
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 7 cut(s) 27, 386, 750, 1371, 1374, 1536, 1593
FspBI CTAG 2 cut(s) 50, 452
GlaI GCGC 2 cut(s) 6, 927
GluI GCNGC 7 cut(s) 27, 386, 750, 1371, 1374, 1536, 1593
GsaI CCCAGC 1 cut(s) 445
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 473, 899, 1107
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 95
HhaI GCGC 2 cut(s) 7, 928
Hin1II CATG 8 cut(s) 59, 571, 766, 944, 1273, 1498, 1520, 1571
Hin6I GCGC 2 cut(s) 5, 926
HinP1I GCGC 2 cut(s) 5, 926
HincII GTYRAC 2 cut(s) 502, 672
HindII GTYRAC 2 cut(s) 502, 672
HindIII AAGCTT 1 cut(s) 1332
HinfI GANTC 4 cut(s) 161, 373, 514, 573
HpaII CCGG 1 cut(s) 118
HphI GGTGA 6 cut(s) 523, 622, 832, 923, 1394, 1442
Hpy166II GTNNAC 4 cut(s) 493, 502, 672, 1565
Hpy188I TCNGA 9 cut(s) 78, 96, 109, 202, 578, 682, 835, 990, 1444
Hpy8I GTNNAC 4 cut(s) 493, 502, 672, 1565
Hpy99I CGWCG 2 cut(s) 68, 89
HpyAV CCTTC 7 cut(s) 121, 197, 253, 571, 984, 995, 1453
HpyCH4III ACNGT 2 cut(s) 461, 1183
HpyCH4V TGCA 9 cut(s) 189, 812, 887, 1094, 1127, 1166, 1247, 1280, 1373
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 173, 755, 1007, 1158
HpyF3I CTNAG 4 cut(s) 303, 430, 834, 1407
Hsp92II CATG 8 cut(s) 59, 571, 766, 944, 1273, 1498, 1520, 1571
HspAI GCGC 2 cut(s) 5, 926
Kzo9I GATC 5 cut(s) 306, 990, 1477, 1486, 1582
LmnI GCTCC 5 cut(s) 96, 104, 923, 1216, 1532
Lsp1109I GCAGC 6 cut(s) 38, 736, 1357, 1385, 1547, 1579
LweI GCATC 6 cut(s) 69, 163, 767, 1097, 1414, 1492
MaeI CTAG 2 cut(s) 50, 452
MaeIII GTNAC 2 cut(s) 461, 865
MalI GATC 5 cut(s) 308, 992, 1479, 1488, 1584
MboI GATC 5 cut(s) 306, 990, 1477, 1486, 1582
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 2 cut(s) 990, 1582
MhlI GDGCHC 3 cut(s) 101, 459, 1139
MlyI GAGTC 2 cut(s) 170, 582
MmeI TCCRAC 3 cut(s) 694, 901, 1455
MroXI GAANNNNTTC 1 cut(s) 1320
MseI TTAA 5 cut(s) 180, 243, 795, 905, 1025
MslI CAYNNNNRTG 1 cut(s) 1572
MspA1I CMGCKG 1 cut(s) 1406
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 423, 1033
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 2 cut(s) 423, 1033
MvnI CGCG 3 cut(s) 89, 498, 928
MwoI GCNNNNNNNGC 5 cut(s) 13, 173, 755, 1007, 1158
NcoI CCATGG 2 cut(s) 762, 1494
NdeII GATC 5 cut(s) 306, 990, 1477, 1486, 1582
NlaIII CATG 8 cut(s) 59, 571, 766, 944, 1273, 1498, 1520, 1571
NspI RCATGY 1 cut(s) 1520
PagI TCATGA 1 cut(s) 1269
PdmI GAANNNNTTC 1 cut(s) 1320
PfeI GAWTC 2 cut(s) 373, 514
PinAI ACCGGT 1 cut(s) 117
PkrI GCNGC 7 cut(s) 28, 387, 751, 1372, 1375, 1537, 1594
PleI GAGTC 2 cut(s) 169, 581
PpsI GAGTC 2 cut(s) 169, 581
PpuMI RGGWCCY 1 cut(s) 412
PshBI ATTAAT 2 cut(s) 243, 795
Psp124BI GAGCTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 2 cut(s) 421, 1031
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 2 cut(s) 421, 1031
PspPI GGNCC 5 cut(s) 133, 412, 471, 826, 1105
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 1 cut(s) 1375
PsuI RGATCY 2 cut(s) 990, 1582
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 2 cut(s) 587, 839
RsaNI GTAC 2 cut(s) 586, 838
RseI CAYNNNNRTG 1 cut(s) 1572
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 5 cut(s) 180, 243, 795, 905, 1025
SatI GCNGC 7 cut(s) 27, 386, 750, 1371, 1374, 1536, 1593
Sau3AI GATC 5 cut(s) 306, 990, 1477, 1486, 1582
Sau96I GGNCC 5 cut(s) 133, 412, 471, 826, 1105
SchI GAGTC 2 cut(s) 170, 582
ScrFI CCNGG 2 cut(s) 423, 1033
SduI GDGCHC 3 cut(s) 101, 459, 1139
SfaNI GCATC 6 cut(s) 69, 163, 767, 1097, 1414, 1492
SfcI CTRYAG 2 cut(s) 1371, 1586
SinI GGWCC 3 cut(s) 133, 412, 826
SmiMI CAYNNNNRTG 1 cut(s) 1572
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SsiI CCGC 4 cut(s) 89, 385, 496, 1468
SspMI CTAG 2 cut(s) 50, 452
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 421, 1031
StyI CCWWGG 3 cut(s) 474, 762, 1494
TaaI ACNGT 2 cut(s) 461, 1183
TaqI TCGA 4 cut(s) 63, 171, 1084, 1284
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 2 cut(s) 373, 514
Tru1I TTAA 5 cut(s) 180, 243, 795, 905, 1025
Tru9I TTAA 5 cut(s) 180, 243, 795, 905, 1025
TscAI CASTG 1 cut(s) 1648
TseI GCWGC 6 cut(s) 26, 749, 1370, 1373, 1535, 1592
TspDTI ATGAA 8 cut(s) 36, 735, 890, 1055, 1059, 1286, 1413, 1584
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 1648
VpaK11BI GGWCC 3 cut(s) 133, 412, 826
VspI ATTAAT 2 cut(s) 243, 795
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 3 cut(s) 336, 653, 958
XceI RCATGY 1 cut(s) 1520
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 1320
XspI CTAG 2 cut(s) 50, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.