AT3G12860

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014044
Physical Location & Seq
Forward (+)
4091567 .. 4094195
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12860.1

Sequence Viewer

Length: 1500 bp
ATGAAGATTTATCTTCTTTCCGAATCACCCTCCGGCTACGGATTGTTCGAGGGACACGGTTCCGATGAGATTGGACAGAACACGGAGGCGGTTCGGAGCTCCGTCTCGGACCTTAGTCGGTTCGGGCGGGTCGTCCAGCTCACTGCTTTTCACCCGTTCCAGTCTGCACTCGATGCTCTTAACCAAATCAACGCCGTCTCTGAAGGATACATGAGCGATGAGCTGAGAAGTTTTCTGGAGCTGAATCTCCCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTTTAGTTTGGGAGTGTCTGAGCCTAAAATCGGTTCTTGCATTTTTGAAGCTACCAAAATTCCTTGCCAGAGCAATGAGTTTGTCCATGAGCTCCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACTTGAAGCCTGGTGATTTGGAAAAAGCTCAACTTGGACTAGCTCATAGCTACAGCAGAGCAAAGGTGAAGTTCAATGTTAACCGGGTGGATAACATGGTTATTCAAGCTATTTTCATGCTTGACACACTTGATAAGGATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCATGGCACTTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAGTCAAAGTTGTCTGAAGAGCACATCCCTATGCTTACTGAAGCCCTGGGTGATGAAGATAAGGCAAGAGAGGTTATTGAAGCTGGAAAAGCATCTATGGGCCAGGATTTATCACCGGTTGATCTGATCAATGTCCAGACCTTTGCTCAGAGAGTTATGGACCTTGCAGATTACAGGAAGAAGCTCTATGATTATCTTGTTACTAAAATGAGTGACATTGCTCCAAATTTGGCGGCCTTGATCGGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCTGACAAATCTTGCCAAGTGCCCATCTTCAACCCTCCAGATTCTCGGTGCTGAGAAGGCACTTTTCAGGGCACTGAAAACACGTGGAAACACACCCAAATATGGTCTAATATTCCATTCATCATTCATCGGGCGTGCATCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGTTCCATTGCTTCCCGGATTGATTGTTTCTCAGATAACAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAAGTAGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCCCCACGTAAGAATGTTGATGTAATGAAAGAAGTGTTGGAAAATCTTGAGAAGAAAGACGAGGGAGAAAAAACAGTGGATGCTTCGGAGAAGAAAAAGAAGAGAAAGACAGAGGAGAAGGAGGAGGAGAAGGAAGAGGAGAAATCAAAGAAAAAGAAAAAGAAAAGCAAAGCAGTAGAAGGAGAGGAATTGACAGCAACAGATAATGGCCATAGCAAGAAGAAGAAGAAAACTAAGTCACAAGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

499

Amino Acids

56.18

Weight (kDa)

8.87

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOP5NT PF08156 4 - 69 2.6e-21 NOP5NT (NUC127) domain
Nop PF01798 177 - 409 5.5e-88 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56110 AT3G12860
fragaria_vesca FvH4_5g07871
malus_domestica MD06G1145200.v1.1 MD14G1159900.v1.1
prunus_persica Prupe.5G153500_v2.0.a1 Prupe.5G153500_v2.0.a1
pyrus_communis pycom06g13450
rosa_chinensis RchiOBHm_Chr7g0190581
rosa_laevigata RLG00000004513
rosa_multiflora Rmu_sc0036974.1_g000001
rosa_roxburghii Rroxscaffold_3G00264490
rosa_rugosa Rorug06G0505400
rosa_samantha Rh7BG114800 Rh7CG116900 Rh7DG116000
rosa_wichuraiana Rw7G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 663
AciI CCGC 3 cut(s) 89, 127, 899
AcoI YGGCCR 1 cut(s) 1453
AcsI RAATTY 2 cut(s) 336, 892
AcuI CTGAAG 3 cut(s) 222, 702, 726
AcvI CACGTG 1 cut(s) 1034
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 2 cut(s) 308, 1052
AflIII ACRYGT 1 cut(s) 1031
AgeI ACCGGT 1 cut(s) 781
AgsI TTSAA 7 cut(s) 326, 418, 487, 518, 651, 746, 981
AjnI CCWGG 3 cut(s) 421, 711, 768
AjuI GAANNNNNNNTTGG 2 cut(s) 1265, 1297
Alw21I GWGCWC 3 cut(s) 101, 372, 690
Alw26I GTCTC 2 cut(s) 109, 202
AoxI GGCC 4 cut(s) 766, 900, 1105, 1453
ApoI RAATTY 2 cut(s) 336, 892
AsiGI ACCGGT 1 cut(s) 781
AspS9I GGNCC 4 cut(s) 109, 766, 826, 1105
AsuC2I CCSGG 2 cut(s) 497, 1150
AsuHPI GGTGA 7 cut(s) 18, 143, 437, 490, 728, 771, 1202
AvaII GGWCC 2 cut(s) 109, 826
BaeGI GKGCMC 2 cut(s) 974, 1024
BalI TGGCCA 1 cut(s) 1455
BanII GRGCYC 2 cut(s) 101, 372
BbrPI CACGTG 1 cut(s) 1034
Bbv12I GWGCWC 3 cut(s) 101, 372, 690
BccI CCATC 2 cut(s) 910, 982
BceAI ACGGC 2 cut(s) 179, 1092
BciT130I CCWGG 3 cut(s) 423, 713, 770
BciVI GTATCC 1 cut(s) 200
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 2 cut(s) 497, 1150
BcoDI GTCTC 2 cut(s) 109, 202
BfaI CTAG 2 cut(s) 452, 927
BfmI CTRYAG 2 cut(s) 463, 1179
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 1 cut(s) 900
BlsI GCNGC 1 cut(s) 901
Bme1390I CCNGG 5 cut(s) 423, 497, 713, 770, 1150
Bme18I GGWCC 2 cut(s) 109, 826
BmgT120I GGNCC 4 cut(s) 109, 766, 826, 1105
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 5 cut(s) 423, 497, 713, 770, 1150
BmsI GCATC 4 cut(s) 163, 767, 1097, 1315
BoxI GACNNNNGTC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 257, 971
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 1313
BpuMI CCSGG 2 cut(s) 497, 1150
BsaAI YACGTR 2 cut(s) 1034, 1253
BsaJI CCNNGG 2 cut(s) 711, 712
BsaWI WCCGGW 1 cut(s) 781
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 1052
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 3 cut(s) 358, 882, 1140
BseBI CCWGG 3 cut(s) 423, 713, 770
BseDI CCNNGG 2 cut(s) 711, 712
BseGI GGATG 2 cut(s) 690, 1330
BseLI CCNNNNNNNGG 2 cut(s) 308, 1052
BseMI GCAATG 3 cut(s) 358, 882, 1140
BseMII CTCAG 6 cut(s) 215, 288, 594, 827, 993, 1179
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 4 cut(s) 1373, 1382, 1385, 1397
BseSI GKGCMC 2 cut(s) 974, 1024
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 4 cut(s) 768, 902, 1107, 1455
BshTI ACCGGT 1 cut(s) 781
BsiHKAI GWGCWC 3 cut(s) 101, 372, 690
BsiSI CCGG 4 cut(s) 33, 496, 782, 1150
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 308, 1052
BsmAI GTCTC 2 cut(s) 109, 202
BsmBI CGTCTC 2 cut(s) 109, 202
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 4 cut(s) 768, 902, 1107, 1455
Bsp1286I GDGCHC 5 cut(s) 101, 372, 690, 974, 1024
Bsp143I GATC 3 cut(s) 787, 792, 906
BspACI CCGC 3 cut(s) 89, 127, 899
BspANI GGCC 4 cut(s) 768, 902, 1107, 1455
BspCNI CTCAG 6 cut(s) 216, 289, 595, 826, 994, 1178
BspLI GGNNCC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 678
BsrDI GCAATG 3 cut(s) 358, 882, 1140
BsrFI RCCGGY 1 cut(s) 781
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 2 cut(s) 711, 712
BssMI GATC 3 cut(s) 787, 792, 906
Bst2UI CCWGG 3 cut(s) 423, 713, 770
Bst4CI ACNGT 2 cut(s) 59, 1321
Bst6I CTCTTC 3 cut(s) 678, 1340, 1374
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBAI YACGTR 2 cut(s) 1034, 1253
BstC8I GCNNGC 1 cut(s) 1086
BstF5I GGATG 2 cut(s) 690, 1330
BstKTI GATC 3 cut(s) 790, 795, 909
BstMAI GTCTC 2 cut(s) 109, 202
BstMBI GATC 3 cut(s) 787, 792, 906
BstMWI GCNNNNNNNGC 3 cut(s) 173, 755, 1007
BstNI CCWGG 3 cut(s) 423, 713, 770
BstNSI RCATGY 1 cut(s) 944
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 5 cut(s) 421, 495, 711, 768, 1148
BstSFI CTRYAG 2 cut(s) 463, 1179
BstSLI GKGCMC 2 cut(s) 974, 1024
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 4 cut(s) 768, 902, 1107, 1455
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 690, 1330
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 3 cut(s) 141, 1022, 1326
Cac8I GCNNGC 1 cut(s) 1086
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 4 cut(s) 109, 766, 826, 1105
CseI GACGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 586
CspAI ACCGGT 1 cut(s) 781
CviAII CATG 6 cut(s) 211, 365, 508, 529, 591, 941
CviQI GTAC 1 cut(s) 586
DpnI GATC 3 cut(s) 789, 794, 908
DpnII GATC 3 cut(s) 787, 792, 906
EaeI YGGCCR 1 cut(s) 1453
Eam1104I CTCTTC 3 cut(s) 678, 1340, 1374
EarI CTCTTC 3 cut(s) 678, 1340, 1374
Ecl136II GAGCTC 2 cut(s) 99, 370
Eco24I GRGCYC 2 cut(s) 101, 372
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 109, 826
Eco53kI GAGCTC 2 cut(s) 99, 370
Eco57I CTGAAG 3 cut(s) 222, 702, 726
Eco72I CACGTG 1 cut(s) 1034
EcoICRI GAGCTC 2 cut(s) 99, 370
EcoRII CCWGG 3 cut(s) 421, 711, 768
EcoRV GATATC 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 101, 372
Esp3I CGTCTC 2 cut(s) 109, 202
FaeI CATG 6 cut(s) 214, 368, 511, 532, 594, 944
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 66
FatI CATG 6 cut(s) 210, 364, 507, 528, 590, 940
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 792
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 2 cut(s) 677, 1337
FriOI GRGCYC 2 cut(s) 101, 372
Fsp4HI GCNGC 1 cut(s) 900
FspBI CTAG 2 cut(s) 452, 927
GluI GCNGC 1 cut(s) 900
GsuI CTGGAG 2 cut(s) 257, 971
HaeIII GGCC 4 cut(s) 768, 902, 1107, 1455
HapII CCGG 4 cut(s) 33, 496, 782, 1150
HgaI GACGC 1 cut(s) 374
Hin1II CATG 6 cut(s) 214, 368, 511, 532, 594, 944
HincII GTYRAC 2 cut(s) 493, 664
HindII GTYRAC 2 cut(s) 493, 664
HinfI GANTC 4 cut(s) 23, 244, 573, 991
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 4 cut(s) 33, 496, 782, 1150
HphI GGTGA 7 cut(s) 18, 143, 437, 490, 728, 771, 1202
Hpy166II GTNNAC 2 cut(s) 493, 664
Hpy188III TCNNGA 6 cut(s) 236, 250, 613, 802, 988, 1292
Hpy8I GTNNAC 2 cut(s) 493, 664
Hpy99I CGWCG 1 cut(s) 665
HpyAV CCTTC 7 cut(s) 197, 253, 257, 1000, 1357, 1369, 1418
HpyCH4III ACNGT 2 cut(s) 59, 1321
HpyCH4IV ACGT 2 cut(s) 1033, 1252
HpyCH4V TGCA 6 cut(s) 167, 318, 833, 944, 1088, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 755, 1007
HpySE526I ACGT 2 cut(s) 1033, 1252
Hsp92II CATG 6 cut(s) 214, 368, 511, 532, 594, 944
Ksp22I TGATCA 1 cut(s) 792
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 787, 792, 906
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 5 cut(s) 96, 104, 238, 375, 892
LweI GCATC 4 cut(s) 163, 767, 1097, 1315
MaeI CTAG 2 cut(s) 452, 927
MaeII ACGT 2 cut(s) 1033, 1252
MaeIII GTNAC 3 cut(s) 865, 878, 1482
MalI GATC 3 cut(s) 789, 794, 908
MboI GATC 3 cut(s) 787, 792, 906
MhlI GDGCHC 5 cut(s) 101, 372, 690, 974, 1024
MlsI TGGCCA 1 cut(s) 1455
MluCI AATT 4 cut(s) 336, 556, 892, 1433
MluNI TGGCCA 1 cut(s) 1455
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 1263
Mox20I TGGCCA 1 cut(s) 1455
MscI TGGCCA 1 cut(s) 1455
MseI TTAA 3 cut(s) 180, 492, 621
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 1455
MspI CCGG 4 cut(s) 33, 496, 782, 1150
MspR9I CCNGG 5 cut(s) 423, 497, 713, 770, 1150
MvaI CCWGG 3 cut(s) 423, 713, 770
MwoI GCNNNNNNNGC 3 cut(s) 173, 755, 1007
NciI CCSGG 2 cut(s) 497, 1150
NdeII GATC 3 cut(s) 787, 792, 906
NlaIII CATG 6 cut(s) 214, 368, 511, 532, 594, 944
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 878, 1482
NspI RCATGY 1 cut(s) 944
PasI CCCWGGG 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 678
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 129
PfeI GAWTC 3 cut(s) 23, 244, 991
PfoI TCCNGGA 1 cut(s) 1148
PinAI ACCGGT 1 cut(s) 781
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 1 cut(s) 581
PmaCI CACGTG 1 cut(s) 1034
PmlI CACGTG 1 cut(s) 1034
PpsI GAGTC 1 cut(s) 581
Ppu21I YACGTR 2 cut(s) 1034, 1253
PshAI GACNNNNGTC 1 cut(s) 114
Psp124BI GAGCTC 2 cut(s) 101, 372
Psp6I CCWGG 3 cut(s) 421, 711, 768
PspCI CACGTG 1 cut(s) 1034
PspGI CCWGG 3 cut(s) 421, 711, 768
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 4 cut(s) 109, 766, 826, 1105
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 1 cut(s) 695
SacI GAGCTC 2 cut(s) 101, 372
SalI GTCGAC 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 3 cut(s) 180, 492, 621
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 3 cut(s) 787, 792, 906
Sau96I GGNCC 4 cut(s) 109, 766, 826, 1105
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 5 cut(s) 423, 497, 713, 770, 1150
SduI GDGCHC 5 cut(s) 101, 372, 690, 974, 1024
SfaNI GCATC 4 cut(s) 163, 767, 1097, 1315
SfcI CTRYAG 2 cut(s) 463, 1179
SinI GGWCC 2 cut(s) 109, 826
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 1292
SmoI CTYRAG 1 cut(s) 1292
Sse9I AATT 4 cut(s) 336, 556, 892, 1433
SsiI CCGC 3 cut(s) 89, 127, 899
SspI AATATT 1 cut(s) 1062
SspMI CTAG 2 cut(s) 452, 927
SstI GAGCTC 2 cut(s) 101, 372
StyD4I CCNGG 5 cut(s) 421, 495, 711, 768, 1148
TaaI ACNGT 2 cut(s) 59, 1321
TaiI ACGT 2 cut(s) 1036, 1255
TaqI TCGA 4 cut(s) 48, 171, 396, 663
TasI AATT 4 cut(s) 336, 556, 892, 1433
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 3 cut(s) 23, 244, 991
Tru1I TTAA 3 cut(s) 180, 492, 621
Tru9I TTAA 3 cut(s) 180, 492, 621
TscAI CASTG 3 cut(s) 148, 1029, 1326
TseFI GTSAC 2 cut(s) 878, 1482
Tsp45I GTSAC 2 cut(s) 878, 1482
TspDTI ATGAA 7 cut(s) 17, 394, 517, 735, 1059, 1066, 1286
TspGWI ACGGA 3 cut(s) 54, 91, 98
TspRI CASTG 3 cut(s) 148, 1029, 1326
VpaK11BI GGWCC 2 cut(s) 109, 826
XapI RAATTY 2 cut(s) 336, 892
XceI RCATGY 1 cut(s) 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 2 cut(s) 452, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.