Rh7DG116000

Nucleolar protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014044
Physical Location & Seq
Forward (+)
9800660 .. 9803956
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG116000.1

Sequence Viewer

Length: 1362 bp
ATGGCGGTTTACCTGCTCTACGAAGCAGCTTCCGGTTACTCTCTGTTCCTAGCTCACGGCCTCGACCAGATCGGCCAGAACACCGAGGCGGTTCGGAGCTCCGTTTCGGACCTGAACCGGTTCGGGAAGGTGGTCCAGCTCGCGGCTTTTCACCCATTTGAGCAGGCCCTCGATGCCCTTAACCAGTGCAACTCAGTCTCCGAAGGGATTATGACTGATGAGTTGAGGAACTTTTTGGAACTTAATCTCCCAAAAGTAAAGGAAGGCAAGAAGCCAAAGTTCAGTTTGGGTGTATATGAACCCAAGCTCGGGTCTCACATATTTGAAGTGACTAAAATCCCCTGCCAAAGCAATGAGTTTGTTCTTGAGCTACTTCGTGGAGTTCGGCTTCATTTTGATAGGTTTATCAAGGACCTAAAGCCCGGGGACTTAGAGAAAGCCCAGCTCGGTCTCAGCCACAGTTACAGCAGGTCCAAGGTCAAGTTTAATGTTAACCGTGTTGACAATATGGTGATTCAAGCAATCTTCCTTTTAGATACCCTCGATAAGGATGTGAATTCTTTCTCAATGAGAGTCAGAGAATGGTACTCTTGGCATTTTCCTGAATTGGTGAAGATTGTCAATGACAATTATCTCTATGCTAAACTTGCAAAAACTATAAGAGATAAGTCAACTTTGTCTGAAGACAACCTCGAAGAATTAACTGATATTGTTGGGGATGAAGATAAGGCAAAGGAGATCATTGAAGCTGCCAAAGCATCCATGGGGCAGGATTTGTCTGATGTTGATTTGCTTAATGTTCAACAATTTGCACAAAAAGTGATGAACCTTTCTGAGTATAGGAAAAAACTGTATGACTATCTGGTCACTAAGATGAATGATATTGCACCCAATTTGGCCTCTTTAATCGGGGAAGTAGTTGGAGCACGTTTAATTTCTCATGCGGGTAGTCTTACAAACTTGGCTAAATGCCCTTCTTCTACCCTTCAGATCCTTGGTGCCGAGAAGGCCCTGTTCAGAGCCTTGAAAACCAAGGGAAACACACCCAAGTATGGACTGATATTCCATTCATCTTTTATTGGTCGCGCATCTGCCCGGAACAAGGGCCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGCATTGACTGCTTTGCAGGTGACTCTAGCCTTGCACATATAATTATCTGGGTTACTTTTCTTTTCTTATGCATTGCATGTATATATAATTTTTCAACCTTTGGCTTGCAGATAATAGCACTACTGCTTTTGGGGAGAAACTCCGCGAACAAGTTGAGGAGCGTCTTGACTTTTATGACAAGGGTGTTGCACCTCGTAAAAACATTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

453

Amino Acids

50.86

Weight (kDa)

9.01

Isoelectric Point (pI)

24.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOP5NT PF08156 4 - 69 6.8e-21 NOP5NT (NUC127) domain
Nop PF01798 177 - 390 1.3e-83 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56110 AT3G12860
fragaria_vesca FvH4_5g07871
malus_domestica MD06G1145200.v1.1 MD14G1159900.v1.1
prunus_persica Prupe.5G153500_v2.0.a1 Prupe.5G153500_v2.0.a1
pyrus_communis pycom06g13450
rosa_chinensis RchiOBHm_Chr7g0190581
rosa_laevigata RLG00000004513
rosa_multiflora Rmu_sc0036974.1_g000001
rosa_roxburghii Rroxscaffold_3G00264490
rosa_rugosa Rorug06G0505400
rosa_samantha Rh7BG114800 Rh7CG116900 Rh7DG116000
rosa_wichuraiana Rw7G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1157
AasI GACNNNNNNGTC 1 cut(s) 863
Acc36I ACCTGC 3 cut(s) 21, 459, 1157
AccB1I GGYRCC 1 cut(s) 998
AccII CGCG 3 cut(s) 143, 1086, 1295
AciI CCGC 5 cut(s) 5, 89, 143, 944, 1293
AclWI GGATC 1 cut(s) 985
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 2 cut(s) 702, 971
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 6 cut(s) 142, 308, 309, 547, 1052, 1102
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 6 cut(s) 326, 518, 746, 803, 1027, 1245
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 8 cut(s) 29, 53, 99, 139, 307, 370, 445, 749
AluI AGCT 8 cut(s) 29, 53, 99, 139, 307, 370, 445, 749
Alw21I GWGCWC 2 cut(s) 101, 928
Alw26I GTCTC 3 cut(s) 202, 318, 455
AlwI GGATC 1 cut(s) 985
Ama87I CYCGRG 2 cut(s) 308, 422
AoxI GGCC 6 cut(s) 58, 73, 165, 897, 1008, 1105
ApeKI GCWGC 2 cut(s) 26, 749
ApoI RAATTY 1 cut(s) 556
AsiGI ACCGGT 1 cut(s) 117
Asp700I GAANNNNTTC 2 cut(s) 119, 560
AspLEI GCGC 1 cut(s) 1088
AspS9I GGNCC 7 cut(s) 109, 133, 166, 412, 471, 1009, 1105
AsuC2I CCSGG 3 cut(s) 423, 424, 1096
AsuHPI GGTGA 4 cut(s) 143, 523, 622, 1181
AvaI CYCGRG 2 cut(s) 308, 422
AvaII GGWCC 4 cut(s) 109, 133, 412, 471
BanI GGYRCC 1 cut(s) 998
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 101, 928
BbvI GCAGC 2 cut(s) 38, 736
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 3 cut(s) 423, 424, 1096
BcoDI GTCTC 3 cut(s) 202, 318, 455
BfaI CTAG 2 cut(s) 50, 1176
BfuAI ACCTGC 3 cut(s) 21, 459, 1157
BglI GCCNNNNNGGC 1 cut(s) 1007
BisI GCNGC 3 cut(s) 27, 144, 750
BlsI GCNGC 3 cut(s) 28, 145, 751
Bme1390I CCNGG 3 cut(s) 423, 424, 1096
Bme18I GGWCC 4 cut(s) 109, 133, 412, 471
BmeT110I CYCGRG 2 cut(s) 308, 422
BmgT120I GGNCC 7 cut(s) 109, 133, 166, 412, 471, 1009, 1105
BmiI GGNNCC 1 cut(s) 1000
BmrFI CCNGG 3 cut(s) 423, 424, 1096
BmsI GCATC 3 cut(s) 163, 767, 1097
BpiI GAAGAC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 3 cut(s) 423, 424, 1096
BsaI GGTCTC 2 cut(s) 318, 455
BsaJI CCNNGG 7 cut(s) 84, 422, 423, 474, 762, 994, 1032
BsaWI WCCGGW 2 cut(s) 32, 117
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 231, 261
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 308, 309, 547, 1052, 1102
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 2 cut(s) 358, 1221
BseDI CCNNGG 7 cut(s) 84, 422, 423, 474, 762, 994, 1032
BseGI GGATG 3 cut(s) 556, 724, 758
BseLI CCNNNNNNNGG 6 cut(s) 142, 308, 309, 547, 1052, 1102
BseMI GCAATG 2 cut(s) 358, 1221
BseMII CTCAG 3 cut(s) 207, 466, 825
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 1321
BseXI GCAGC 2 cut(s) 38, 736
BseYI CCCAGC 1 cut(s) 441
Bsh1236I CGCG 3 cut(s) 143, 1086, 1295
BshFI GGCC 6 cut(s) 60, 75, 167, 899, 1010, 1107
BshNI GGYRCC 1 cut(s) 998
BshTI ACCGGT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 101, 928
BsiHKCI CYCGRG 2 cut(s) 308, 422
BsiSI CCGG 4 cut(s) 33, 118, 423, 1096
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 6 cut(s) 142, 308, 309, 547, 1052, 1102
BsmAI GTCTC 3 cut(s) 202, 318, 455
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 6 cut(s) 60, 75, 167, 899, 1010, 1107
Bso31I GGTCTC 2 cut(s) 318, 455
BsoBI CYCGRG 2 cut(s) 308, 422
Bsp1286I GDGCHC 2 cut(s) 101, 928
Bsp143I GATC 3 cut(s) 69, 738, 990
Bsp19I CCATGG 1 cut(s) 762
BspACI CCGC 5 cut(s) 5, 89, 143, 944, 1293
BspANI GGCC 6 cut(s) 60, 75, 167, 899, 1010, 1107
BspCNI CTCAG 3 cut(s) 206, 465, 826
BspFNI CGCG 3 cut(s) 143, 1086, 1295
BspLI GGNNCC 1 cut(s) 1000
BspMI ACCTGC 3 cut(s) 21, 459, 1157
BspPI GGATC 1 cut(s) 985
BspT107I GGYRCC 1 cut(s) 998
BspTNI GGTCTC 2 cut(s) 318, 455
BsrDI GCAATG 2 cut(s) 358, 1221
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 7 cut(s) 84, 422, 423, 474, 762, 994, 1032
BssMI GATC 3 cut(s) 69, 738, 990
BssT1I CCWWGG 4 cut(s) 474, 762, 994, 1032
Bst4CI ACNGT 3 cut(s) 461, 497, 852
BstAPI GCANNNNNTGC 1 cut(s) 1158
BstC8I GCNNGC 3 cut(s) 141, 165, 1256
BstDEI CTNAG 5 cut(s) 193, 430, 452, 834, 870
BstDSI CCRYGG 1 cut(s) 762
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 556, 724, 758
BstFNI CGCG 3 cut(s) 143, 1086, 1295
BstHHI GCGC 1 cut(s) 1088
BstKTI GATC 3 cut(s) 72, 741, 993
BstMAI GTCTC 3 cut(s) 202, 318, 455
BstMBI GATC 3 cut(s) 69, 738, 990
BstMWI GCNNNNNNNGC 5 cut(s) 173, 647, 755, 1007, 1158
BstNSI RCATGY 1 cut(s) 1230
BstSCI CCNGG 3 cut(s) 421, 422, 1094
BstUI CGCG 3 cut(s) 143, 1086, 1295
BstV1I GCAGC 2 cut(s) 38, 736
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 990
BstYI RGATCY 1 cut(s) 990
BsuRI GGCC 6 cut(s) 60, 75, 167, 899, 1010, 1107
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 3 cut(s) 556, 724, 758
BtsIMutI CAGTG 1 cut(s) 191
BveI ACCTGC 3 cut(s) 21, 459, 1157
Cac8I GCNNGC 3 cut(s) 141, 165, 1256
CfoI GCGC 1 cut(s) 1088
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 7 cut(s) 109, 133, 166, 412, 471, 1009, 1105
Cfr9I CCCGGG 1 cut(s) 422
CseI GACGC 1 cut(s) 1300
Csp6I GTAC 1 cut(s) 586
CspAI ACCGGT 1 cut(s) 117
CviAII CATG 3 cut(s) 763, 941, 1227
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 5 cut(s) 193, 430, 452, 834, 870
DpnI GATC 3 cut(s) 71, 740, 992
DpnII GATC 3 cut(s) 69, 738, 990
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 4 cut(s) 474, 762, 994, 1032
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 2 cut(s) 318, 455
Eco47I GGWCC 4 cut(s) 109, 133, 412, 471
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 702, 971
Eco88I CYCGRG 2 cut(s) 308, 422
EcoICRI GAGCTC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO109I RGGNCCY 3 cut(s) 166, 412, 1009
EcoRI GAATTC 1 cut(s) 556
EcoT14I CCWWGG 4 cut(s) 474, 762, 994, 1032
EcoT22I ATGCAT 1 cut(s) 1223
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 4 cut(s) 474, 762, 994, 1032
FaeI CATG 3 cut(s) 766, 944, 1230
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 762, 940, 1226
FauI CCCGC 1 cut(s) 937
Fnu4HI GCNGC 3 cut(s) 27, 144, 750
FokI GGATG 3 cut(s) 563, 731, 745
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 27, 144, 750
FspBI CTAG 2 cut(s) 50, 1176
GlaI GCGC 1 cut(s) 1087
GluI GCNGC 3 cut(s) 27, 144, 750
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 6 cut(s) 60, 75, 167, 899, 1010, 1107
HapII CCGG 4 cut(s) 33, 118, 423, 1096
HgaI GACGC 1 cut(s) 1300
HhaI GCGC 1 cut(s) 1088
Hin1II CATG 3 cut(s) 766, 944, 1230
Hin6I GCGC 1 cut(s) 1086
HinP1I GCGC 1 cut(s) 1086
HincII GTYRAC 3 cut(s) 493, 502, 672
HindII GTYRAC 3 cut(s) 493, 502, 672
HinfI GANTC 3 cut(s) 514, 573, 1172
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 4 cut(s) 33, 118, 423, 1096
HphI GGTGA 4 cut(s) 143, 523, 622, 1181
Hpy166II GTNNAC 4 cut(s) 10, 493, 502, 672
Hpy188I TCNGA 9 cut(s) 96, 109, 202, 578, 682, 781, 835, 990, 1019
Hpy188III TCNNGA 4 cut(s) 124, 365, 602, 1315
Hpy8I GTNNAC 4 cut(s) 10, 493, 502, 672
HpyAV CCTTC 6 cut(s) 121, 197, 257, 984, 995, 1000
HpyCH4III ACNGT 3 cut(s) 461, 497, 852
HpyCH4IV ACGT 1 cut(s) 928
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 647, 755, 1007, 1158
HpyF3I CTNAG 5 cut(s) 193, 430, 452, 834, 870
HpySE526I ACGT 1 cut(s) 928
Hsp92II CATG 3 cut(s) 766, 944, 1230
HspAI GCGC 1 cut(s) 1086
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 69, 738, 990
LmnI GCTCC 4 cut(s) 96, 104, 923, 1308
Lsp1109I GCAGC 2 cut(s) 38, 736
LweI GCATC 3 cut(s) 163, 767, 1097
MaeI CTAG 2 cut(s) 50, 1176
MaeII ACGT 1 cut(s) 928
MaeIII GTNAC 6 cut(s) 35, 328, 461, 865, 1169, 1201
MalI GATC 3 cut(s) 71, 740, 992
MboI GATC 3 cut(s) 69, 738, 990
MboII GAAGA 6 cut(s) 517, 625, 695, 707, 734, 969
MflI RGATCY 1 cut(s) 990
MhlI GDGCHC 2 cut(s) 101, 928
MluCI AATT 9 cut(s) 556, 605, 628, 698, 806, 892, 933, 1191, 1237
MlyI GAGTC 2 cut(s) 582, 1166
MmeI TCCRAC 1 cut(s) 901
MnlI CCTC 9 cut(s) 71, 79, 179, 219, 551, 701, 910, 1299, 1352
Mph1103I ATGCAT 1 cut(s) 1223
MroXI GAANNNNTTC 2 cut(s) 119, 560
MseI TTAA 8 cut(s) 180, 243, 486, 492, 701, 795, 905, 932
MslI CAYNNNNRTG 2 cut(s) 872, 1357
MspI CCGG 4 cut(s) 33, 118, 423, 1096
MspR9I CCNGG 3 cut(s) 423, 424, 1096
MvnI CGCG 3 cut(s) 143, 1086, 1295
MwoI GCNNNNNNNGC 5 cut(s) 173, 647, 755, 1007, 1158
NciI CCSGG 3 cut(s) 423, 424, 1096
NcoI CCATGG 1 cut(s) 762
NdeII GATC 3 cut(s) 69, 738, 990
NlaIII CATG 3 cut(s) 766, 944, 1230
NlaIV GGNNCC 1 cut(s) 1000
NmeAIII GCCGAG 1 cut(s) 1027
NmuCI GTSAC 3 cut(s) 328, 865, 1169
NsiI ATGCAT 1 cut(s) 1223
NspI RCATGY 1 cut(s) 1230
PaqCI CACCTGC 1 cut(s) 1157
PdmI GAANNNNTTC 2 cut(s) 119, 560
PfeI GAWTC 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 117
PkrI GCNGC 3 cut(s) 28, 145, 751
PleI GAGTC 2 cut(s) 581, 1166
PpsI GAGTC 2 cut(s) 581, 1166
PpuMI RGGWCCY 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 1000
PspPI GGNCC 7 cut(s) 109, 133, 166, 412, 471, 1009, 1105
PspPPI RGGWCCY 1 cut(s) 412
PsuI RGATCY 1 cut(s) 990
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 2 cut(s) 872, 1357
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 8 cut(s) 180, 243, 486, 492, 701, 795, 905, 932
SatI GCNGC 3 cut(s) 27, 144, 750
Sau3AI GATC 3 cut(s) 69, 738, 990
Sau96I GGNCC 7 cut(s) 109, 133, 166, 412, 471, 1009, 1105
SchI GAGTC 2 cut(s) 582, 1166
ScrFI CCNGG 3 cut(s) 423, 424, 1096
SduI GDGCHC 2 cut(s) 101, 928
SfaNI GCATC 3 cut(s) 163, 767, 1097
SinI GGWCC 4 cut(s) 109, 133, 412, 471
SmaI CCCGGG 1 cut(s) 424
SmiMI CAYNNNNRTG 2 cut(s) 872, 1357
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 9 cut(s) 556, 605, 628, 698, 806, 892, 933, 1191, 1237
SsiI CCGC 5 cut(s) 5, 89, 143, 944, 1293
SspMI CTAG 2 cut(s) 50, 1176
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 421, 422, 1094
StyI CCWWGG 4 cut(s) 474, 762, 994, 1032
TaaI ACNGT 3 cut(s) 461, 497, 852
TaiI ACGT 1 cut(s) 931
TaqI TCGA 4 cut(s) 63, 171, 543, 693
TaqII GACCGA 1 cut(s) 437
TasI AATT 9 cut(s) 556, 605, 628, 698, 806, 892, 933, 1191, 1237
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 8 cut(s) 180, 243, 486, 492, 701, 795, 905, 932
Tru9I TTAA 8 cut(s) 180, 243, 486, 492, 701, 795, 905, 932
TscAI CASTG 1 cut(s) 191
TseFI GTSAC 3 cut(s) 328, 865, 1169
TseI GCWGC 2 cut(s) 26, 749
Tsp45I GTSAC 3 cut(s) 328, 865, 1169
TspDTI ATGAA 6 cut(s) 312, 380, 735, 839, 890, 1059
TspGWI ACGGA 1 cut(s) 91
TspMI CCCGGG 1 cut(s) 422
TspRI CASTG 1 cut(s) 191
VpaK11BI GGWCC 4 cut(s) 109, 133, 412, 471
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 1230
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XmaI CCCGGG 1 cut(s) 422
XmnI GAANNNNTTC 2 cut(s) 119, 560
XspI CTAG 2 cut(s) 50, 1176
Zsp2I ATGCAT 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.