Rh7BG114800

Nucleolar protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014044
Physical Location & Seq
Forward (+)
8587519 .. 8591173
3655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG114800.1

Sequence Viewer

Length: 1140 bp
ATGACTGATGAGTTGAGGAACTTTTTGGAACTTAATCTCCCAAAAGTAAAGGAAGGCAAGAAGCCAAAGTTCAGTTTGGGTGTATATGAACCCAAGCTCGGGTCTCACATATTTGAAGTGACTAAAATCCCCTGCCAAAGCAATGAGTTTGTTCTTGAGCTACTTCGTGGAGTTCGGCTTCATTTTGATAGGTTTATCAAGGACCTAAAGCCCGGGGACTTAGAGAAAGCCCAGCTTGGTCTCAGCCACAGTTACAGCAGGTCCAAGGTCAAGTTTAATGTTAACCGTGTTGACAATATGGTGATTCAAGCAATCTTCCTTTTAGATACCCTCGATAAGGATGTGAATTCTTTCTCAATGAGAGTCAGAGAATGGTACTCTTGGCATTTTCCTGAATTGGTGAAGATTGTCAATGACAATTATCTCTATGCTAAACTTGCAAAAACTATAAGAGATAAGTCAACTTTGTCTGAAGACAACCTCGAAGAATTAACTGATATTGTTGGTGATGAAGATAAGGCAAAGGAGATCATTGAAGCTGCCAAAGCATCCATGGGGCAGGATTTGTCTGATGTTGATTTGCTTAATGTTCAACAATTTGCACAAAAAGTGATGAACCTTTCTGAGTATAGGAAAAAACTGTATGACTATCTGGTCACTAAGATGAATGATATTGCACCCAATTTGGCCTCTTTAATCGGGGAAGTAGTTGGAGCACGTTTAATTTCTCATGCGGGTAGTCTTACAAACTTGGCTAAATGCCCTTCTTCTACCCTTCAGATCCTTGGTGCCGAGAAGGCCCTCTTCAGGGCCTTGAAAACCAAGGGAAACACACCCAAGTATGGACTGATATTCCATTCATCTTTTATTGGTCGCGCATCTGCCCGGAACAAGGGCAGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGCATTGACTGCTTTGCAGATAATAGCACTACTGCTTTTGGGGAGAAACTCCGCGAACAAGTTGAGGAGCGTCTTGACTTTTATGACAAGGGTGTTGCACCTCGTAAAAACATTGATGTGATGAAATCTGCGATGGAGAGTACTCAAAGCAAAGGTGAGGAAGCAAACCAATATGGTGCCAGTGTTTTCCATTTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

379

Amino Acids

42.87

Weight (kDa)

8.87

Isoelectric Point (pI)

23.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop PF01798 107 - 339 1.5e-89 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56110 AT3G12860
fragaria_vesca FvH4_5g07871
malus_domestica MD06G1145200.v1.1 MD14G1159900.v1.1
prunus_persica Prupe.5G153500_v2.0.a1 Prupe.5G153500_v2.0.a1
pyrus_communis pycom06g13450
rosa_chinensis RchiOBHm_Chr7g0190581
rosa_laevigata RLG00000004513
rosa_multiflora Rmu_sc0036974.1_g000001
rosa_roxburghii Rroxscaffold_3G00264490
rosa_rugosa Rorug06G0505400
rosa_samantha Rh7BG114800 Rh7CG116900 Rh7DG116000
rosa_wichuraiana Rw7G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 249
AccB1I GGYRCC 2 cut(s) 788, 1115
AccII CGCG 2 cut(s) 876, 993
AciI CCGC 2 cut(s) 734, 991
AclWI GGATC 1 cut(s) 775
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 3 cut(s) 492, 761, 790
AfaI GTAC 2 cut(s) 377, 1081
AfiI CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
AgsI TTSAA 5 cut(s) 116, 308, 536, 593, 817
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 4 cut(s) 97, 160, 235, 539
AluI AGCT 4 cut(s) 97, 160, 235, 539
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 108, 245
AlwI GGATC 1 cut(s) 775
Ama87I CYCGRG 2 cut(s) 98, 212
AoxI GGCC 3 cut(s) 687, 798, 810
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 878
AspS9I GGNCC 4 cut(s) 202, 261, 799, 810
AsuC2I CCSGG 3 cut(s) 213, 214, 886
AsuHPI GGTGA 4 cut(s) 313, 412, 518, 1106
AvaI CYCGRG 2 cut(s) 98, 212
AvaII GGWCC 2 cut(s) 202, 261
BanI GGYRCC 2 cut(s) 788, 1115
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 1066
BcnI CCSGG 3 cut(s) 213, 214, 886
BcoDI GTCTC 2 cut(s) 108, 245
BfuAI ACCTGC 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 797
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 3 cut(s) 213, 214, 886
Bme18I GGWCC 2 cut(s) 202, 261
BmeT110I CYCGRG 2 cut(s) 98, 212
BmgT120I GGNCC 4 cut(s) 202, 261, 799, 810
BmiI GGNNCC 2 cut(s) 790, 1117
BmrFI CCNGG 3 cut(s) 213, 214, 886
BmsI GCATC 2 cut(s) 557, 887
BpiI GAAGAC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 213, 214, 886
BsaI GGTCTC 2 cut(s) 108, 245
BsaJI CCNNGG 6 cut(s) 212, 213, 264, 552, 784, 822
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
Bse1I ACTGG 1 cut(s) 1119
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 6 cut(s) 212, 213, 264, 552, 784, 822
BseGI GGATG 2 cut(s) 346, 548
BseLI CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 256, 615
BseNI ACTGG 1 cut(s) 1119
BseRI GAGGAG 1 cut(s) 1019
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 231
Bsh1236I CGCG 2 cut(s) 876, 993
BshFI GGCC 3 cut(s) 689, 800, 812
BshNI GGYRCC 2 cut(s) 788, 1115
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 2 cut(s) 98, 212
BsiSI CCGG 2 cut(s) 213, 886
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
BsmAI GTCTC 2 cut(s) 108, 245
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 3 cut(s) 689, 800, 812
Bso31I GGTCTC 2 cut(s) 108, 245
BsoBI CYCGRG 2 cut(s) 98, 212
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 2 cut(s) 528, 780
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 2 cut(s) 734, 991
BspANI GGCC 3 cut(s) 689, 800, 812
BspCNI CTCAG 2 cut(s) 255, 616
BspFNI CGCG 2 cut(s) 876, 993
BspLI GGNNCC 2 cut(s) 790, 1117
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 775
BspT107I GGYRCC 2 cut(s) 788, 1115
BspTNI GGTCTC 2 cut(s) 108, 245
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 1119
BssECI CCNNGG 6 cut(s) 212, 213, 264, 552, 784, 822
BssMI GATC 2 cut(s) 528, 780
BssT1I CCWWGG 4 cut(s) 264, 552, 784, 822
Bst4CI ACNGT 3 cut(s) 251, 287, 642
Bst6I CTCTTC 1 cut(s) 809
BstAPI GCANNNNNTGC 1 cut(s) 948
BstDEI CTNAG 4 cut(s) 220, 242, 624, 660
BstDSI CCRYGG 1 cut(s) 552
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 346, 548
BstFNI CGCG 2 cut(s) 876, 993
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 2 cut(s) 531, 783
BstMAI GTCTC 2 cut(s) 108, 245
BstMBI GATC 2 cut(s) 528, 780
BstMWI GCNNNNNNNGC 4 cut(s) 437, 545, 797, 948
BstSCI CCNGG 3 cut(s) 211, 212, 884
BstUI CGCG 2 cut(s) 876, 993
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuRI GGCC 3 cut(s) 689, 800, 812
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 1085
BtsCI GGATG 2 cut(s) 346, 548
BtsIMutI CAGTG 1 cut(s) 1126
BveI ACCTGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 878
Cfr13I GGNCC 4 cut(s) 202, 261, 799, 810
Cfr9I CCCGGG 1 cut(s) 212
CseI GACGC 1 cut(s) 998
Csp6I GTAC 2 cut(s) 376, 1080
CviAII CATG 3 cut(s) 553, 731, 1137
CviQI GTAC 2 cut(s) 376, 1080
DdeI CTNAG 4 cut(s) 220, 242, 624, 660
DpnI GATC 2 cut(s) 530, 782
DpnII GATC 2 cut(s) 528, 780
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 809
EarI CTCTTC 1 cut(s) 809
Eco130I CCWWGG 4 cut(s) 264, 552, 784, 822
Eco31I GGTCTC 2 cut(s) 108, 245
Eco47I GGWCC 2 cut(s) 202, 261
Eco57I CTGAAG 3 cut(s) 492, 761, 790
Eco88I CYCGRG 2 cut(s) 98, 212
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 3 cut(s) 202, 799, 810
EcoRI GAATTC 1 cut(s) 346
EcoT14I CCWWGG 4 cut(s) 264, 552, 784, 822
ErhI CCWWGG 4 cut(s) 264, 552, 784, 822
FaeI CATG 3 cut(s) 556, 734, 1140
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 788, 820
FaqI GGGAC 1 cut(s) 230
FatI CATG 3 cut(s) 552, 730, 1136
FauI CCCGC 1 cut(s) 727
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 2 cut(s) 353, 535
Fsp4HI GCNGC 1 cut(s) 540
GlaI GCGC 1 cut(s) 877
GluI GCNGC 1 cut(s) 540
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 3 cut(s) 689, 800, 812
HapII CCGG 2 cut(s) 213, 886
HgaI GACGC 1 cut(s) 998
HhaI GCGC 1 cut(s) 878
Hin1II CATG 3 cut(s) 556, 734, 1140
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HincII GTYRAC 3 cut(s) 283, 292, 462
HindII GTYRAC 3 cut(s) 283, 292, 462
HinfI GANTC 2 cut(s) 304, 363
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 2 cut(s) 213, 886
HphI GGTGA 4 cut(s) 313, 412, 518, 1106
Hpy166II GTNNAC 3 cut(s) 283, 292, 462
Hpy188I TCNGA 5 cut(s) 368, 472, 571, 625, 780
Hpy188III TCNNGA 3 cut(s) 155, 392, 1013
Hpy8I GTNNAC 3 cut(s) 283, 292, 462
HpyAV CCTTC 4 cut(s) 47, 774, 785, 790
HpyCH4III ACNGT 3 cut(s) 251, 287, 642
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 6 cut(s) 440, 602, 677, 917, 956, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 545, 797, 948
HpyF3I CTNAG 4 cut(s) 220, 242, 624, 660
HpySE526I ACGT 1 cut(s) 718
Hsp92II CATG 3 cut(s) 556, 734, 1140
HspAI GCGC 1 cut(s) 876
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 2 cut(s) 528, 780
LmnI GCTCC 2 cut(s) 713, 1006
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 2 cut(s) 557, 887
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 3 cut(s) 118, 251, 655
MalI GATC 2 cut(s) 530, 782
MboI GATC 2 cut(s) 528, 780
MboII GAAGA 7 cut(s) 307, 415, 485, 497, 524, 759, 796
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 7 cut(s) 346, 395, 418, 488, 596, 682, 723
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 691
MnlI CCTC 8 cut(s) 9, 341, 491, 700, 812, 997, 1050, 1090
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 7 cut(s) 33, 276, 282, 491, 585, 695, 722
MslI CAYNNNNRTG 2 cut(s) 662, 1055
MspI CCGG 2 cut(s) 213, 886
MspR9I CCNGG 3 cut(s) 213, 214, 886
MvnI CGCG 2 cut(s) 876, 993
MwoI GCNNNNNNNGC 4 cut(s) 437, 545, 797, 948
NciI CCSGG 3 cut(s) 213, 214, 886
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 528, 780
NlaIII CATG 3 cut(s) 556, 734, 1140
NlaIV GGNNCC 2 cut(s) 790, 1117
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 2 cut(s) 118, 655
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 790, 1117
PspPI GGNCC 4 cut(s) 202, 261, 799, 810
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 1 cut(s) 780
RsaI GTAC 2 cut(s) 377, 1081
RsaNI GTAC 2 cut(s) 376, 1080
RseI CAYNNNNRTG 2 cut(s) 662, 1055
SaqAI TTAA 7 cut(s) 33, 276, 282, 491, 585, 695, 722
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 2 cut(s) 528, 780
Sau96I GGNCC 4 cut(s) 202, 261, 799, 810
ScaI AGTACT 1 cut(s) 1081
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 213, 214, 886
SduI GDGCHC 1 cut(s) 718
SfaNI GCATC 2 cut(s) 557, 887
SinI GGWCC 2 cut(s) 202, 261
SmaI CCCGGG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 662, 1055
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 7 cut(s) 346, 395, 418, 488, 596, 682, 723
SsiI CCGC 2 cut(s) 734, 991
StyD4I CCNGG 3 cut(s) 211, 212, 884
StyI CCWWGG 4 cut(s) 264, 552, 784, 822
TaaI ACNGT 3 cut(s) 251, 287, 642
TaiI ACGT 1 cut(s) 721
TaqI TCGA 2 cut(s) 333, 483
TasI AATT 7 cut(s) 346, 395, 418, 488, 596, 682, 723
TatI WGTACW 1 cut(s) 1079
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 7 cut(s) 33, 276, 282, 491, 585, 695, 722
Tru9I TTAA 7 cut(s) 33, 276, 282, 491, 585, 695, 722
TscAI CASTG 1 cut(s) 1126
TseFI GTSAC 2 cut(s) 118, 655
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 118, 655
TspDTI ATGAA 7 cut(s) 102, 170, 525, 629, 680, 849, 1076
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 1126
VpaK11BI GGWCC 2 cut(s) 202, 261
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XmaI CCCGGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 350
ZrmI AGTACT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.