Rh7CG116900

Nucleolar protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014044
Physical Location & Seq
Forward (+)
8977911 .. 8981360
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG116900.1

Sequence Viewer

Length: 1440 bp
ATGACTGATGAGTTGAGGAACTTTTTGGAACTTAATCTCCCAAAAGTAAAGGAAGGCAAGAAGCCAAAGTTCAGTTTGGGTGTATATGAACCCAAGCTCGGGTCTCACATATTTGAAGTGACTAAAATCCCCTGCCAAAGCAATGAGTTTGTTCTTGAGCTACTTCGTGGAGTTCGGCTTCATTTTGATAGGTTTATCAAGGACCTAAAGCCCGGGGACTTAGAGAAAGCTCAGCTTGGTCTCAGCCACAGTTACAGCAGGTCCAAGGTCAAGTTTAATGTTAACCGCGTTGACAATATGGTGATTCAAGCAATCTTCCTTTTAGATACCCTCGATAAGGATGTGAATTCTTTCTCAATGAGAGTCAGAGAATGGTACTCTTGGCATTTTCCTGAATTGGTGAAGATTGTCAATGACAATTATCTCTATGCTAAACTTGCAAAAACTATAAGAGATAAGTCAACTCTGTCTGAAGACAACCTCGAAGAATTAACTGATATTGTTGGTGATGAAGATAAGGCAAAGGAGATCATTGAAGCTGCCAAAGCATCCATGGGGCAGGATTTGTCTGATGTTGATTTGCTTAATGTTCAACAATTTGCACAAAAAGTGATGAACCTTTCTGAGTATAGGAAAAAACTGTATGACTATCTGGTCACTAAGATGAATGATATTGCACCCAATTTGGCCTCTTTAATCGGGGAAGTAGTTGGAGCACGTTTAATTTCTCATGCGGGTAGTCTTACAAACTTGGCTAAATGCCCTTCTTCTACCCTTCAGATCCTTGGTGCCGAGAAGGCCCTCTTCAGGGCCTTGAAAACCAAGGGAAACACACCCAAGTATGGACTGATATTCCATTCATCTTTTATTGGTCGCGCATCTGCCCGGAACAAGGGCCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGCATTGACTGCTTTGCAGATAATAGCACTACTGCTTTTGGGGAGAAACTCCGCGAACAAGTTGAGGAGCGTCTTGACTTTTATGACAAGGGTGTTGCACCTCGTAAAAACATTGATGTGATGAAATCTGCGATGGAGAGTACTCAAAGCAAAGATGATATGGAAACAGAAGAAGTGACTATTGAAGCTTCAGAAAAGAAAAGCAAGAAGAAATCAAGGAGTGCAGCTACAGAGAATGGTGATGTGGATGAACCAGCTACAAATGGAGATGCTACTGAGGGTAAATCTGAAAAGAAGAAGAAGAAGAAGAAGGACAAGAGGAAGTTGGATGAGGAAGATGAAGAGATGGAGGATGCAAACAATGGACATGCTGAGGAGGATGGAACAAGCAAGAAGAAGAAGAAGAAGAAAAGTAAACATGGAGAGGCTGATGGAGCCGATTTGGCCAGTGATGTTAAGAAGAAGAAAAAGAAGAAATCTAAAAGTGAAGACTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOP5NT Nop

Protein Analysis

479

Amino Acids

53.97

Weight (kDa)

8.86

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop PF01798 107 - 339 2.8e-89 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56110 AT3G12860
fragaria_vesca FvH4_5g07871
malus_domestica MD06G1145200.v1.1 MD14G1159900.v1.1
prunus_persica Prupe.5G153500_v2.0.a1 Prupe.5G153500_v2.0.a1
pyrus_communis pycom06g13450
rosa_chinensis RchiOBHm_Chr7g0190581
rosa_laevigata RLG00000004513
rosa_multiflora Rmu_sc0036974.1_g000001
rosa_roxburghii Rroxscaffold_3G00264490
rosa_rugosa Rorug06G0505400
rosa_samantha Rh7BG114800 Rh7CG116900 Rh7DG116000
rosa_wichuraiana Rw7G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 788
AccII CGCG 3 cut(s) 288, 876, 993
AciI CCGC 3 cut(s) 286, 734, 991
AclWI GGATC 1 cut(s) 775
AcoI YGGCCR 1 cut(s) 1383
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 4 cut(s) 492, 761, 790, 1113
AfaI GTAC 2 cut(s) 377, 1081
AfiI CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
AgsI TTSAA 6 cut(s) 116, 308, 536, 593, 817, 1124
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 8 cut(s) 97, 160, 230, 235, 539, 1127, 1166, 1196
AluI AGCT 8 cut(s) 97, 160, 230, 235, 539, 1127, 1166, 1196
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 108, 245
AlwI GGATC 1 cut(s) 775
Ama87I CYCGRG 2 cut(s) 98, 212
AoxI GGCC 5 cut(s) 687, 798, 810, 895, 1383
ApeKI GCWGC 2 cut(s) 539, 1163
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 878
AspS9I GGNCC 5 cut(s) 202, 261, 799, 810, 895
AsuC2I CCSGG 3 cut(s) 213, 214, 886
AsuHPI GGTGA 4 cut(s) 313, 412, 518, 1190
AvaI CYCGRG 2 cut(s) 98, 212
AvaII GGWCC 2 cut(s) 202, 261
BalI TGGCCA 1 cut(s) 1385
BanI GGYRCC 1 cut(s) 788
BbsI GAAGAC 2 cut(s) 480, 1434
Bbv12I GWGCWC 1 cut(s) 718
BbvCI CCTCAGC 1 cut(s) 1311
BbvI GCAGC 2 cut(s) 526, 1175
BccI CCATC 4 cut(s) 1066, 1279, 1313, 1364
BcnI CCSGG 3 cut(s) 213, 214, 886
BcoDI GTCTC 2 cut(s) 108, 245
BfmI CTRYAG 1 cut(s) 1167
BfuAI ACCTGC 1 cut(s) 249
BglI GCCNNNNNGGC 2 cut(s) 797, 1382
BisI GCNGC 2 cut(s) 540, 1164
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 2 cut(s) 541, 1165
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 3 cut(s) 213, 214, 886
Bme18I GGWCC 2 cut(s) 202, 261
BmeT110I CYCGRG 2 cut(s) 98, 212
BmgT120I GGNCC 5 cut(s) 202, 261, 799, 810, 895
BmiI GGNNCC 2 cut(s) 790, 1375
BmrFI CCNGG 3 cut(s) 213, 214, 886
BmsI GCATC 4 cut(s) 557, 887, 1198, 1282
BpiI GAAGAC 2 cut(s) 480, 1434
Bpu10I CCTNAGC 1 cut(s) 1311
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 213, 214, 886
BsaI GGTCTC 2 cut(s) 108, 245
BsaJI CCNNGG 6 cut(s) 212, 213, 264, 552, 784, 822
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
Bse1I ACTGG 1 cut(s) 1386
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 6 cut(s) 212, 213, 264, 552, 784, 822
BseGI GGATG 6 cut(s) 346, 548, 1192, 1273, 1297, 1324
BseLI CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 5 cut(s) 245, 256, 615, 1206, 1302
BseNI ACTGG 1 cut(s) 1386
BseRI GAGGAG 2 cut(s) 1019, 1328
BseXI GCAGC 2 cut(s) 526, 1175
BsgI GTGCAG 1 cut(s) 1182
Bsh1236I CGCG 3 cut(s) 288, 876, 993
BshFI GGCC 5 cut(s) 689, 800, 812, 897, 1385
BshNI GGYRCC 1 cut(s) 788
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 2 cut(s) 98, 212
BsiSI CCGG 2 cut(s) 213, 886
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 7 cut(s) 98, 99, 337, 807, 808, 842, 892
BsmAI GTCTC 2 cut(s) 108, 245
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 5 cut(s) 689, 800, 812, 897, 1385
Bso31I GGTCTC 2 cut(s) 108, 245
BsoBI CYCGRG 2 cut(s) 98, 212
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 2 cut(s) 528, 780
Bsp1720I GCTNAGC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 3 cut(s) 286, 734, 991
BspANI GGCC 5 cut(s) 689, 800, 812, 897, 1385
BspCNI CTCAG 5 cut(s) 244, 255, 616, 1207, 1303
BspFNI CGCG 3 cut(s) 288, 876, 993
BspLI GGNNCC 2 cut(s) 790, 1375
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 775
BspT107I GGYRCC 1 cut(s) 788
BspTNI GGTCTC 2 cut(s) 108, 245
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 1386
BssECI CCNNGG 6 cut(s) 212, 213, 264, 552, 784, 822
BssMI GATC 2 cut(s) 528, 780
BssT1I CCWWGG 4 cut(s) 264, 552, 784, 822
Bst4CI ACNGT 2 cut(s) 251, 642
Bst6I CTCTTC 2 cut(s) 809, 1275
BstAPI GCANNNNNTGC 1 cut(s) 948
BstDEI CTNAG 7 cut(s) 220, 231, 242, 624, 660, 1215, 1311
BstDSI CCRYGG 1 cut(s) 552
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 6 cut(s) 346, 548, 1192, 1273, 1297, 1324
BstFNI CGCG 3 cut(s) 288, 876, 993
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 2 cut(s) 531, 783
BstMAI GTCTC 2 cut(s) 108, 245
BstMBI GATC 2 cut(s) 528, 780
BstMWI GCNNNNNNNGC 6 cut(s) 437, 545, 797, 948, 1373, 1382
BstNSI RCATGY 1 cut(s) 1310
BstSCI CCNGG 3 cut(s) 211, 212, 884
BstSFI CTRYAG 1 cut(s) 1167
BstUI CGCG 3 cut(s) 288, 876, 993
BstV1I GCAGC 2 cut(s) 526, 1175
BstV2I GAAGAC 2 cut(s) 480, 1434
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BsuRI GGCC 5 cut(s) 689, 800, 812, 897, 1385
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 1085
BtsCI GGATG 6 cut(s) 346, 548, 1192, 1273, 1297, 1324
BtsIMutI CAGTG 1 cut(s) 1393
BveI ACCTGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 878
Cfr13I GGNCC 5 cut(s) 202, 261, 799, 810, 895
Cfr9I CCCGGG 1 cut(s) 212
CseI GACGC 1 cut(s) 998
Csp6I GTAC 2 cut(s) 376, 1080
CviAII CATG 4 cut(s) 553, 731, 1307, 1358
CviQI GTAC 2 cut(s) 376, 1080
DdeI CTNAG 7 cut(s) 220, 231, 242, 624, 660, 1215, 1311
DpnI GATC 2 cut(s) 530, 782
DpnII GATC 2 cut(s) 528, 780
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 1383
Eam1104I CTCTTC 2 cut(s) 809, 1275
EarI CTCTTC 2 cut(s) 809, 1275
Eco130I CCWWGG 4 cut(s) 264, 552, 784, 822
Eco31I GGTCTC 2 cut(s) 108, 245
Eco47I GGWCC 2 cut(s) 202, 261
Eco57I CTGAAG 4 cut(s) 492, 761, 790, 1113
Eco88I CYCGRG 2 cut(s) 98, 212
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 3 cut(s) 202, 799, 810
EcoRI GAATTC 1 cut(s) 346
EcoT14I CCWWGG 4 cut(s) 264, 552, 784, 822
ErhI CCWWGG 4 cut(s) 264, 552, 784, 822
FaeI CATG 4 cut(s) 556, 734, 1310, 1361
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 788, 820
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 552, 730, 1306, 1357
FauI CCCGC 1 cut(s) 727
Fnu4HI GCNGC 2 cut(s) 540, 1164
FokI GGATG 6 cut(s) 353, 535, 1199, 1280, 1304, 1331
Fsp4HI GCNGC 2 cut(s) 540, 1164
GlaI GCGC 1 cut(s) 877
GluI GCNGC 2 cut(s) 540, 1164
HaeIII GGCC 5 cut(s) 689, 800, 812, 897, 1385
HapII CCGG 2 cut(s) 213, 886
HgaI GACGC 1 cut(s) 998
HhaI GCGC 1 cut(s) 878
Hin1II CATG 4 cut(s) 556, 734, 1310, 1361
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HincII GTYRAC 3 cut(s) 283, 292, 462
HindII GTYRAC 3 cut(s) 283, 292, 462
HindIII AAGCTT 1 cut(s) 1125
HinfI GANTC 3 cut(s) 304, 363, 1430
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 2 cut(s) 213, 886
HphI GGTGA 4 cut(s) 313, 412, 518, 1190
Hpy166II GTNNAC 4 cut(s) 283, 292, 462, 1355
Hpy188I TCNGA 8 cut(s) 368, 472, 571, 625, 780, 1132, 1228, 1435
Hpy188III TCNNGA 3 cut(s) 155, 392, 1013
Hpy8I GTNNAC 4 cut(s) 283, 292, 462, 1355
HpyAV CCTTC 5 cut(s) 47, 774, 785, 790, 1243
HpyCH4III ACNGT 2 cut(s) 251, 642
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 8 cut(s) 440, 602, 677, 917, 956, 1037, 1163, 1295
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 545, 797, 948, 1373, 1382
HpyF3I CTNAG 7 cut(s) 220, 231, 242, 624, 660, 1215, 1311
HpySE526I ACGT 1 cut(s) 718
Hsp92II CATG 4 cut(s) 556, 734, 1310, 1361
HspAI GCGC 1 cut(s) 876
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 2 cut(s) 528, 780
LmnI GCTCC 3 cut(s) 713, 1006, 1373
Lsp1109I GCAGC 2 cut(s) 526, 1175
LweI GCATC 4 cut(s) 557, 887, 1198, 1282
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 4 cut(s) 118, 251, 655, 1114
MalI GATC 2 cut(s) 530, 782
MboI GATC 2 cut(s) 528, 780
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 718
MlsI TGGCCA 1 cut(s) 1385
MluCI AATT 7 cut(s) 346, 395, 418, 488, 596, 682, 723
MluNI TGGCCA 1 cut(s) 1385
MlyI GAGTC 2 cut(s) 372, 1424
MmeI TCCRAC 2 cut(s) 691, 1245
Mox20I TGGCCA 1 cut(s) 1385
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 1385
MseI TTAA 8 cut(s) 33, 276, 282, 491, 585, 695, 722, 1395
MslI CAYNNNNRTG 2 cut(s) 662, 1055
Msp20I TGGCCA 1 cut(s) 1385
MspI CCGG 2 cut(s) 213, 886
MspR9I CCNGG 3 cut(s) 213, 214, 886
MvnI CGCG 3 cut(s) 288, 876, 993
MwoI GCNNNNNNNGC 6 cut(s) 437, 545, 797, 948, 1373, 1382
NciI CCSGG 3 cut(s) 213, 214, 886
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 528, 780
NlaIII CATG 4 cut(s) 556, 734, 1310, 1361
NlaIV GGNNCC 2 cut(s) 790, 1375
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 3 cut(s) 118, 655, 1114
NspI RCATGY 1 cut(s) 1310
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 541, 1165
PleI GAGTC 2 cut(s) 371, 1424
PpsI GAGTC 2 cut(s) 371, 1424
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 790, 1375
PspPI GGNCC 5 cut(s) 202, 261, 799, 810, 895
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 1 cut(s) 780
RsaI GTAC 2 cut(s) 377, 1081
RsaNI GTAC 2 cut(s) 376, 1080
RseI CAYNNNNRTG 2 cut(s) 662, 1055
SaqAI TTAA 8 cut(s) 33, 276, 282, 491, 585, 695, 722, 1395
SatI GCNGC 2 cut(s) 540, 1164
Sau3AI GATC 2 cut(s) 528, 780
Sau96I GGNCC 5 cut(s) 202, 261, 799, 810, 895
ScaI AGTACT 1 cut(s) 1081
SchI GAGTC 2 cut(s) 372, 1424
ScrFI CCNGG 3 cut(s) 213, 214, 886
SduI GDGCHC 1 cut(s) 718
SfaNI GCATC 4 cut(s) 557, 887, 1198, 1282
SfcI CTRYAG 1 cut(s) 1167
SinI GGWCC 2 cut(s) 202, 261
SmaI CCCGGG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 662, 1055
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 7 cut(s) 346, 395, 418, 488, 596, 682, 723
SsiI CCGC 3 cut(s) 286, 734, 991
StyD4I CCNGG 3 cut(s) 211, 212, 884
StyI CCWWGG 4 cut(s) 264, 552, 784, 822
TaaI ACNGT 2 cut(s) 251, 642
TaiI ACGT 1 cut(s) 721
TaqI TCGA 2 cut(s) 333, 483
TasI AATT 7 cut(s) 346, 395, 418, 488, 596, 682, 723
TatI WGTACW 1 cut(s) 1079
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 8 cut(s) 33, 276, 282, 491, 585, 695, 722, 1395
Tru9I TTAA 8 cut(s) 33, 276, 282, 491, 585, 695, 722, 1395
TscAI CASTG 1 cut(s) 1393
TseFI GTSAC 3 cut(s) 118, 655, 1114
TseI GCWGC 2 cut(s) 539, 1163
Tsp45I GTSAC 3 cut(s) 118, 655, 1114
TspDTI ATGAA 9 cut(s) 102, 170, 525, 629, 680, 849, 1076, 1203, 1293
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 1393
VpaK11BI GGWCC 2 cut(s) 202, 261
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 346
XceI RCATGY 1 cut(s) 1310
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XmaI CCCGGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 350
ZrmI AGTACT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.