Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

21024482 .. 21025902

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGCAGTCAGAAGAGGGTCAACAGCAACAGCAACAGGGAGTGATGGATTATGTACCTCCTCATGCTTATCAGAGTGGGCCAGTAAATGCAGCTTCCCATATGGCATTCCAACAAGCTCACCACTTCCACCACCACCATCAGCAGCAACAACAGCAGCAGCTTCAGATGTTCTGGGCTAACCAAATGCAAGAGATCGAGCATACCACTGATTTCAAGAACCACACCCTTCCCCTAGCCCGCATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATCTCTGCGGAGGCTCCTGTGATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCACTCTACGTGCTTGGATCCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATCGCCGCTGCCATTTCCAGGACCGACGTGTTTGATTTCCTTGTGGACATAATCCCGAGGGACGAGCTGAAAGAAGAAGGTTTAGGCGTGACCAAAGGGACCATACCATCGGTGGTGGGTTCCCCGCCATACTATTACTTGCAACAACAGGGGATGATGCAACACTGGCCCCAGGAGCAACACCCTGATGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

199

Amino Acids

23.12

Weight (kDa)

5.65

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	67 - 139	8.6e-19	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	76 - 139	2.6e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	241, 290, 408, 527
AclWI	GGATC	2 cut(s)	352, 365
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	367, 420
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	419, 573
AluBI	AGCT	6 cut(s)	95, 119, 163, 263, 340, 469
AluI	AGCT	6 cut(s)	95, 119, 163, 263, 340, 469
Alw21I	GWGCWC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	352, 365
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	3 cut(s)	80, 315, 569
ApeKI	GCWGC	5 cut(s)	92, 145, 157, 160, 410
AspS9I	GGNCC	5 cut(s)	80, 384, 423, 501, 570
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	384, 423, 501
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	104, 157, 169, 172, 397
BccI	CCATC	3 cut(s)	40, 147, 517
BciT130I	CCWGG	2 cut(s)	421, 575
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	6 cut(s)	93, 146, 158, 161, 408, 411
BlsI	GCNGC	6 cut(s)	94, 147, 159, 162, 409, 412
Bme1390I	CCNGG	2 cut(s)	421, 575
Bme18I	GGWCC	3 cut(s)	384, 423, 501
BmeT110I	CYCGRG	1 cut(s)	457
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	5 cut(s)	80, 384, 423, 501, 570
BmiI	GGNNCC	5 cut(s)	297, 359, 502, 523, 572
BmrFI	CCNGG	2 cut(s)	421, 575
BmsI	GCATC	2 cut(s)	252, 549
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	312, 366, 458, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 420
Bse1I	ACTGG	2 cut(s)	83, 572
BseBI	CCWGG	2 cut(s)	421, 575
BseDI	CCNNGG	4 cut(s)	312, 366, 458, 573
BseGI	GGATG	2 cut(s)	285, 561
BseLI	CCNNNNNNNGG	2 cut(s)	367, 420
BseNI	ACTGG	2 cut(s)	83, 572
BseRI	GAGGAG	3 cut(s)	51, 383, 394
BseXI	GCAGC	5 cut(s)	104, 157, 169, 172, 397
BshFI	GGCC	3 cut(s)	82, 317, 571
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	2 cut(s)	476, 514
BslI	CCNNNNNNNGG	2 cut(s)	367, 420
BsmFI	GGGAC	2 cut(s)	476, 514
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	82, 317, 571
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	195, 252, 282, 357
BspACI	CCGC	4 cut(s)	241, 290, 408, 527
BspANI	GGCC	3 cut(s)	82, 317, 571
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	297, 359, 502, 523, 572
BspPI	GGATC	2 cut(s)	352, 365
BsrI	ACTGG	2 cut(s)	83, 572
BssECI	CCNNGG	4 cut(s)	312, 366, 458, 573
BssMI	GATC	4 cut(s)	195, 252, 282, 357
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	421, 575
Bst6I	CTCTTC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	285, 561
BstKTI	GATC	4 cut(s)	198, 255, 285, 360
BstMBI	GATC	4 cut(s)	195, 252, 282, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 568, 577
BstNI	CCWGG	2 cut(s)	421, 575
BstSCI	CCNGG	2 cut(s)	419, 573
BstV1I	GCAGC	5 cut(s)	104, 157, 169, 172, 397
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	82, 317, 571
BtgZI	GCGATG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	285, 561
BtsIMutI	CAGTG	2 cut(s)	207, 565
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	5 cut(s)	80, 384, 423, 501, 570
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	65, 256
CviQI	GTAC	1 cut(s)	56
DpnI	GATC	4 cut(s)	197, 254, 284, 359
DpnII	GATC	4 cut(s)	195, 252, 282, 357
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	384, 423, 501
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	419, 573
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	68, 259
FaiI	YATR	9 cut(s)	54, 66, 102, 104, 204, 257, 452, 506, 532
FaqI	GGGAC	2 cut(s)	476, 514
FatI	CATG	2 cut(s)	64, 255
FauI	CCCGC	2 cut(s)	248, 534
FauNDI	CATATG	1 cut(s)	102
Fnu4HI	GCNGC	6 cut(s)	93, 146, 158, 161, 408, 411
FokI	GGATG	2 cut(s)	292, 568
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	6 cut(s)	93, 146, 158, 161, 408, 411
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	6 cut(s)	93, 146, 158, 161, 408, 411
HaeIII	GGCC	3 cut(s)	82, 317, 571
Hin1II	CATG	2 cut(s)	68, 259
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	593
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	23, 448
Hpy188I	TCNGA	3 cut(s)	13, 75, 168
Hpy188III	TCNNGA	4 cut(s)	217, 247, 256, 457
Hpy8I	GTNNAC	2 cut(s)	23, 448
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	239, 473
HpyCH4IV	ACGT	2 cut(s)	349, 429
HpyCH4V	TGCA	5 cut(s)	92, 190, 391, 544, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 568, 577
HpySE526I	ACGT	2 cut(s)	349, 429
Hsp92II	CATG	2 cut(s)	68, 259
Kzo9I	GATC	4 cut(s)	195, 252, 282, 357
LmnI	GCTCC	4 cut(s)	4, 301, 337, 577
Lsp1109I	GCAGC	5 cut(s)	104, 157, 169, 172, 397
LweI	GCATC	2 cut(s)	252, 549
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	349, 429
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	4 cut(s)	197, 254, 284, 359
MboI	GATC	4 cut(s)	195, 252, 282, 357
MboII	GAAGA	5 cut(s)	26, 262, 281, 406, 488
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	9 cut(s)	10, 69, 72, 270, 286, 361, 372, 375, 453
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	421, 575
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	421, 575
MwoI	GCNNNNNNNGC	3 cut(s)	154, 568, 577
NdeI	CATATG	1 cut(s)	102
NdeII	GATC	4 cut(s)	195, 252, 282, 357
NlaIII	CATG	2 cut(s)	68, 259
NlaIV	GGNNCC	5 cut(s)	297, 359, 502, 523, 572
NmuCI	GTSAC	1 cut(s)	490
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	317
PctI	GAATGC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	94, 147, 159, 162, 409, 412
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	419, 573
PspGI	CCWGG	2 cut(s)	419, 573
PspN4I	GGNNCC	5 cut(s)	297, 359, 502, 523, 572
PspPI	GGNCC	5 cut(s)	80, 384, 423, 501, 570
PspPPI	RGGWCCY	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	588
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	6 cut(s)	93, 146, 158, 161, 408, 411
Sau3AI	GATC	4 cut(s)	195, 252, 282, 357
Sau96I	GGNCC	5 cut(s)	80, 384, 423, 501, 570
ScrFI	CCNGG	2 cut(s)	421, 575
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	2 cut(s)	252, 549
SinI	GGWCC	3 cut(s)	384, 423, 501
SmiMI	CAYNNNNRTG	1 cut(s)	588
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	4 cut(s)	241, 290, 408, 527
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	419, 573
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	2 cut(s)	352, 432
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	440
TauI	GCSGC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TscAI	CASTG	2 cut(s)	214, 572
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	5 cut(s)	92, 145, 157, 160, 410
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	272, 282, 319
TspRI	CASTG	2 cut(s)	214, 572
VpaK11BI	GGWCC	3 cut(s)	384, 423, 501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.