Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039918.1

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

2346 .. 3170

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggatcactcggaacaaacacaacagcagcaacaacaacagcagcctgtggttggtgttgtggccggttctggtcagatgtcttatgctcctccgtcctatcaaactgctccgatggtggcttctggacctcctgctgtggccatcccttccccaacacagccacccccgacattctctaattccccacatcagatagcctaccagcaagcccagcacttccacagccaacagcagcagcagcaacaacagcagcttcaggtgttctggggcaaccaaatgcaagacattgagcaaacaactgacttcaagaatcacagccttccacttgctagaattaagaaaatcatgaaagctgatgaggatgtccgaatgatatcagctgaggctccagtgatatttgcaaaggcatgtgaaatattcatcttggagctgactttgcgctcatggattcacacagaagagaacaagaggagaacattacaaaagaatgatattgcagctgctatttcaaggactgatgtgttcgattttctggttgatattatcccaagagatgagttgaaagaggagggacttggagtgaccaaggccaacatccctgtggtgggttctgcggcagatgttccatactactatgttccaccacagcatcctgttggtgctcctgggatgatcgtggggaagccagtggatcaagcaacaatgtatggtgctcaacagcctcggccacctatggctttcatgccctgggctcagtcccaacctcaacagccgctgccacagcaacaacaacaaacccaacagcagcagacagacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

274

Amino Acids

30.63

Weight (kDa)

5.6

Isoelectric Point (pI)

73.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	617, 776
AclWI	GGATC	2 cut(s)	12, 702
AcoI	YGGCCR	3 cut(s)	63, 141, 728
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	53, 607, 608
AgsI	TTSAA	3 cut(s)	310, 513, 565
AjnI	CCWGG	2 cut(s)	667, 749
AluBI	AGCT	5 cut(s)	256, 356, 383, 433, 503
AluI	AGCT	5 cut(s)	256, 356, 383, 433, 503
Alw21I	GWGCWC	2 cut(s)	667, 718
AlwI	GGATC	2 cut(s)	12, 702
AlwNI	CAGNNNCTG	1 cut(s)	778
AoxI	GGCC	4 cut(s)	63, 141, 591, 728
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	757
Bbv12I	GWGCWC	2 cut(s)	667, 718
BbvCI	CCTCAGC	1 cut(s)	384
BccI	CCATC	2 cut(s)	109, 152
BciT130I	CCWGG	2 cut(s)	669, 751
BfaI	CTAG	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	669, 751
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	669, 751
BmsI	GCATC	1 cut(s)	661
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	384
BsaJI	CCNNGG	5 cut(s)	588, 668, 725, 749, 750
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 607, 608
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	392, 689
BseBI	CCWGG	2 cut(s)	669, 751
BseDI	CCNNGG	5 cut(s)	588, 668, 725, 749, 750
BseGI	GGATG	5 cut(s)	144, 370, 597, 652, 678
BseLI	CCNNNNNNNGG	3 cut(s)	53, 607, 608
BseMII	CTCAG	2 cut(s)	375, 770
BseNI	ACTGG	2 cut(s)	392, 689
BseRI	GAGGAG	3 cut(s)	81, 487, 584
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	4 cut(s)	65, 143, 593, 730
BsiHKAI	GWGCWC	2 cut(s)	667, 718
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	588, 745
BslI	CCNNNNNNNGG	3 cut(s)	53, 607, 608
BsmFI	GGGAC	2 cut(s)	588, 745
BsnI	GGCC	4 cut(s)	65, 143, 593, 730
Bsp1286I	GDGCHC	3 cut(s)	667, 718, 757
Bsp143I	GATC	3 cut(s)	4, 675, 694
BspACI	CCGC	2 cut(s)	617, 776
BspANI	GGCC	4 cut(s)	65, 143, 593, 730
BspCNI	CTCAG	2 cut(s)	376, 769
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	12, 702
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	392, 689
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	5 cut(s)	588, 668, 725, 749, 750
BssMI	GATC	3 cut(s)	4, 675, 694
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	669, 751
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	384, 756
BstF5I	GGATG	5 cut(s)	144, 370, 597, 652, 678
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	3 cut(s)	7, 678, 697
BstMBI	GATC	3 cut(s)	4, 675, 694
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 241, 250, 439, 784
BstNI	CCWGG	2 cut(s)	669, 751
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	667, 749
BsuRI	GGCC	4 cut(s)	65, 143, 593, 730
BtsCI	GGATG	5 cut(s)	144, 370, 597, 652, 678
BtsIMutI	CAGTG	2 cut(s)	399, 696
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	778
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	128
CviAII	CATG	4 cut(s)	349, 411, 447, 745
DdeI	CTNAG	2 cut(s)	384, 756
DpnI	GATC	3 cut(s)	6, 677, 696
DpnII	GATC	3 cut(s)	4, 675, 694
EaeI	YGGCCR	3 cut(s)	63, 141, 728
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	667, 749
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	4 cut(s)	352, 414, 450, 748
FaiI	YATR	9 cut(s)	87, 350, 412, 448, 631, 639, 711, 737, 746
FaqI	GGGAC	2 cut(s)	588, 745
FatI	CATG	4 cut(s)	348, 410, 446, 744
FokI	GGATG	5 cut(s)	131, 377, 584, 639, 685
FriOI	GRGCYC	1 cut(s)	757
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	443
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	4 cut(s)	65, 143, 593, 730
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	352, 414, 450, 748
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	313, 451
HpaII	CCGG	1 cut(s)	66
Hpy188I	TCNGA	5 cut(s)	13, 78, 114, 195, 371
Hpy188III	TCNNGA	3 cut(s)	126, 310, 349
HpyAV	CCTTC	2 cut(s)	159, 332
HpyCH4V	TGCA	3 cut(s)	283, 404, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 241, 250, 439, 784
HpyF3I	CTNAG	2 cut(s)	384, 756
Hsp92II	CATG	4 cut(s)	352, 414, 450, 748
HspAI	GCGC	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	4, 675, 694
LmnI	GCTCC	5 cut(s)	94, 115, 394, 430, 670
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	3 cut(s)	6, 677, 696
MboI	GATC	3 cut(s)	4, 675, 694
MboII	GAAGA	1 cut(s)	473
MhlI	GDGCHC	3 cut(s)	667, 718, 757
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	181, 336, 820
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	9 cut(s)	102, 141, 355, 379, 465, 562, 565, 735, 777
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	3 cut(s)	383, 503, 778
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	669, 751
MvaI	CCWGG	2 cut(s)	669, 751
MwoI	GCNNNNNNNGC	5 cut(s)	214, 241, 250, 439, 784
NdeII	GATC	3 cut(s)	4, 675, 694
NlaIII	CATG	4 cut(s)	352, 414, 450, 748
NlaIV	GGNNCC	1 cut(s)	390
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	348
PasI	CCCWGGG	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	313, 451
Psp6I	CCWGG	2 cut(s)	667, 749
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	667, 749
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	778
PvuII	CAGCTG	2 cut(s)	383, 503
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	3 cut(s)	4, 675, 694
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	669, 751
SduI	GDGCHC	3 cut(s)	667, 718, 757
SetI	ASST	9 cut(s)	133, 258, 264, 358, 385, 435, 505, 736, 769
SfaNI	GCATC	1 cut(s)	661
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	602
Sse9I	AATT	3 cut(s)	181, 336, 820
SsiI	CCGC	2 cut(s)	617, 776
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	667, 749
StyI	CCWWGG	1 cut(s)	588
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	181, 336, 820
TauI	GCSGC	2 cut(s)	620, 778
TfiI	GAWTC	2 cut(s)	313, 451
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	399, 696
TseFI	GTSAC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	365, 412, 733
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	399, 696
VpaK11BI	GGWCC	1 cut(s)	128
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.