Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

7107724 .. 7110605

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0082400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGTATAACATTAGATTAGCTGTAAAATTTGGTTTTGTGATGAGAAAATCGGAGAGTGAGTCCTCCGACTCTGACTCCGACGACGGCCTCGAAGATGAGGAAGAGGACGGCGACGAAGACGAGGATGACGACGACGACGACGCGGATGACGACGACGATGAGGACGATGAGGATGAAGATGACGACGACGATGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGATGAGGACGACGAAGAAGACGAGGAAGACGCTGAAGGAGGCGATGACGACGGCGACGGCGAGGGAGATGACGACGGCGACGGCGAGGGAGATGACGACGGCGACGGCGAGGGAGATGACGACGACGGTGAGGGCGAGGATGAGGTTACCGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGACTGGGCCAGCCTGTGTGCCAGTACTATATGAGGACGGGGATGTCCAAATTTGGCGCCACTTGTAAGTATCACCATCCTAAGCAGGGAGGAGGCTCTGCGGCCCCTGTATCACTAAATTACTATGGATACTCATTACGACCGGGTGAAAGAGAGTGTTCCTACTATGTGAAAACTGGACAAATAATTGGACCAGATCTGAAAGATGGAGCTAATGAAAGCAATGCTGAAGTGAGCAAACGCGAGAAGGTCAGGCTAGTATACTACTGGGAGCCAGTACACTACTGCGGATCAGTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

244

Amino Acids

26.71

Weight (kDa)

4.05

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	194, 475
AccB1I	GGYRCC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	2 cut(s)	146, 675
AciI	CCGC	4 cut(s)	146, 416, 533, 720
AclWI	GGATC	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	29, 482
AcuI	CTGAAG	2 cut(s)	300, 681
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	5 cut(s)	210, 425, 458, 711, 729
AfiI	CCNNNNNNNGG	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	23, 401, 410, 644
AluI	AGCT	4 cut(s)	23, 401, 410, 644
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	4 cut(s)	88, 223, 439, 534
ApoI	RAATTY	2 cut(s)	29, 482
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	4 cut(s)	224, 439, 535, 623
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	386, 497, 590
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	3 cut(s)	126, 270, 279
Bbv12I	GWGCWC	1 cut(s)	403
BccI	CCATC	2 cut(s)	516, 632
BceAI	ACGGC	8 cut(s)	103, 127, 313, 319, 337, 343, 361, 367
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	576
BfaI	CTAG	1 cut(s)	689
BfoI	RGCGCY	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	554
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	200, 576
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	224, 439, 535, 623
BmiI	GGNNCC	3 cut(s)	490, 537, 705
BmrFI	CCNGG	2 cut(s)	200, 576
BmrI	ACTGGG	2 cut(s)	446, 709
BmuI	ACTGGG	2 cut(s)	446, 709
BpiI	GAAGAC	3 cut(s)	126, 270, 279
Bpu10I	CCTNAGC	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	489
BsaWI	WCCGGW	3 cut(s)	218, 229, 395
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 62, 77, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	5 cut(s)	441, 454, 613, 704, 707
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	200
BseGI	GGATG	6 cut(s)	133, 154, 181, 391, 480, 508
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	5 cut(s)	441, 454, 613, 704, 707
BseRI	GAGGAG	1 cut(s)	537
BseYI	CCCAGC	1 cut(s)	410
Bsh1236I	CGCG	2 cut(s)	146, 675
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	4 cut(s)	90, 225, 441, 536
BshNI	GGYRCC	1 cut(s)	488
BsiEI	CGRYCG	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	4 cut(s)	219, 230, 396, 575
BslI	CCNNNNNNNGG	1 cut(s)	518
BsnI	GGCC	4 cut(s)	90, 225, 441, 536
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	628, 722
BspACI	CCGC	4 cut(s)	146, 416, 533, 720
BspANI	GGCC	4 cut(s)	90, 225, 441, 536
BspCNI	CTCAG	1 cut(s)	396
BspFNI	CGCG	2 cut(s)	146, 675
BspLI	GGNNCC	3 cut(s)	490, 537, 705
BspPI	GGATC	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	5 cut(s)	441, 454, 613, 704, 707
BssMI	GATC	2 cut(s)	628, 722
BssNAI	GTATAC	1 cut(s)	694
BssNI	GRCGYC	1 cut(s)	489
Bst1107I	GTATAC	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	213, 374
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	404, 513
BstEII	GGTNACC	1 cut(s)	391
BstF5I	GGATG	6 cut(s)	133, 154, 181, 391, 480, 508
BstFNI	CGCG	2 cut(s)	146, 675
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	2 cut(s)	631, 725
BstMBI	GATC	2 cut(s)	628, 722
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	198, 574
BstUI	CGCG	2 cut(s)	146, 675
BstV2I	GAAGAC	3 cut(s)	126, 270, 279
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BstZ17I	GTATAC	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	4 cut(s)	90, 225, 441, 536
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	133, 154, 181, 391, 480, 508
Cac8I	GCNNGC	1 cut(s)	443
CfoI	GCGC	1 cut(s)	491
Cfr13I	GGNCC	4 cut(s)	224, 439, 535, 623
CseI	GACGC	2 cut(s)	152, 284
Csp6I	GTAC	5 cut(s)	209, 424, 457, 710, 728
CviQI	GTAC	5 cut(s)	209, 424, 457, 710, 728
DdeI	CTNAG	2 cut(s)	404, 513
DinI	GGCGCC	1 cut(s)	490
DpnI	GATC	2 cut(s)	630, 724
DpnII	GATC	2 cut(s)	628, 722
DrdI	GACNNNNNNGTC	2 cut(s)	194, 475
DseDI	GACNNNNNNGTC	2 cut(s)	194, 475
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	300, 681
Eco88I	CYCGRG	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	403
EgeI	GGCGCC	1 cut(s)	490
EheI	GGCGCC	1 cut(s)	490
FaiI	YATR	6 cut(s)	9, 462, 464, 558, 600, 694
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	6 cut(s)	140, 161, 188, 398, 487, 495
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	1 cut(s)	534
GsaI	CCCAGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	4 cut(s)	90, 225, 441, 536
HapII	CCGG	4 cut(s)	219, 230, 396, 575
HgaI	GACGC	2 cut(s)	152, 284
HhaI	GCGC	1 cut(s)	491
Hin1I	GRCGYC	1 cut(s)	489
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	3 cut(s)	62, 71, 77
HpaII	CCGG	4 cut(s)	219, 230, 396, 575
HphI	GGTGA	3 cut(s)	386, 497, 590
Hpy166II	GTNNAC	3 cut(s)	694, 712, 730
Hpy188I	TCNGA	6 cut(s)	55, 70, 76, 82, 405, 633
Hpy8I	GTNNAC	3 cut(s)	694, 712, 730
HpyAV	CCTTC	2 cut(s)	275, 673
HpyCH4III	ACNGT	2 cut(s)	213, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	2 cut(s)	404, 513
Hsp92I	GRCGYC	1 cut(s)	489
HspAI	GCGC	1 cut(s)	489
KasI	GGCGCC	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	628, 722
LmnI	GCTCC	3 cut(s)	398, 641, 703
MaeI	CTAG	1 cut(s)	689
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	630, 724
MboI	GATC	2 cut(s)	628, 722
MboII	GAAGA	7 cut(s)	107, 116, 131, 191, 272, 275, 284
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	4 cut(s)	29, 482, 550, 618
Mly113I	GGCGCC	1 cut(s)	489
MlyI	GAGTC	3 cut(s)	65, 71, 71
MmeI	TCCRAC	2 cut(s)	93, 105
MspI	CCGG	4 cut(s)	219, 230, 396, 575
MspR9I	CCNGG	2 cut(s)	200, 576
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	146, 675
MwoI	GCNNNNNNNGC	1 cut(s)	407
NarI	GGCGCC	1 cut(s)	489
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	628, 722
NlaIV	GGNNCC	3 cut(s)	490, 537, 705
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	3 cut(s)	65, 70, 71
PluTI	GGCGCC	1 cut(s)	492
PpsI	GAGTC	3 cut(s)	65, 70, 71
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	490, 537, 705
PspPI	GGNCC	4 cut(s)	224, 439, 535, 623
PsuI	RGATCY	1 cut(s)	628
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	5 cut(s)	210, 425, 458, 711, 729
RsaNI	GTAC	5 cut(s)	209, 424, 457, 710, 728
SacI	GAGCTC	1 cut(s)	403
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	2 cut(s)	628, 722
Sau96I	GGNCC	4 cut(s)	224, 439, 535, 623
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	3 cut(s)	65, 71, 71
ScrFI	CCNGG	2 cut(s)	200, 576
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	7 cut(s)	25, 207, 393, 403, 412, 646, 684
SfoI	GGCGCC	1 cut(s)	490
SinI	GGWCC	1 cut(s)	623
Sse9I	AATT	4 cut(s)	29, 482, 550, 618
SsiI	CCGC	4 cut(s)	146, 416, 533, 720
SspDI	GGCGCC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	198, 574
TaaI	ACNGT	2 cut(s)	213, 374
TaqI	TCGA	1 cut(s)	93
TasI	AATT	4 cut(s)	29, 482, 550, 618
TatI	WGTACW	3 cut(s)	456, 709, 727
TauI	GCSGC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	192, 663
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	29, 482
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	1 cut(s)	689
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.