Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

18371716 .. 18374675

Gene Structure 2960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATCACTCGGAACAAACACAACAGCAGCAGCAGCAGCAACAACAACAGCAGCCTGTGGTTGGTGTTGTGGCCGGTTCTGGTCAGATGTCTTATGCTCCTCCATCCTATCAAACTGCTCCGATGGTGGCTTCTGGACCTCCTGCTGTGGCCATCCCTTCCCCAACACAGCCACCCCCGACATTCTCTAATTCCCCACATCAGATAGCCTACCAGCAAGCCCAGCACTTCCACAGCCAACAGCAGCAGCAGCAACAACAGCAGCTTCAGGTGTTCTGGGGCAACCAAATGCAAGACATTGAGCAAACAACTGACTTCAAGAATCACAGCCTTCCACTTGCTAGAATTAAGAAAATCATGAAAGCTGATGAGGATGTCCGAATGATATCAGCTGAGGCTCCAGTGATATTTGCAAAGGCATGTGAAATATTCATCTTGGAGCTGACTTTGCGCTCATGGATTCACACAGAAGAGAACAAGAGGAGAACATTACAAAAGAATGATATTGCAGCTGCTATTTCAAGGACTGATGTGTTCGATTTTCTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAGGAGGGACTTGGAGTGACCAAGGCCAACATCCCTGTGGTGGGTTCTGCGGCAGATGTTCCATACTACTATGTTCCACCACAGCATCCTGTTGGTGCTCCTGGGATGATCGTGGGGAAGCCAGTGGATCAAGCAACAATGTATGGTGCTCAACAGCCTCGGCCACCTATGGCTTTCATGCCCTGGGCTCAGTCCCAACCTCAACAGCCGCTGCCACAGCAGCAACAACAAACCCAACAGCAGCAGACAGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

277

Amino Acids

31.01

Weight (kDa)

5.6

Isoelectric Point (pI)

74.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	102 - 173	9.8e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	110 - 173	5.5e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	626, 785
AclWI	GGATC	2 cut(s)	12, 711
AcoI	YGGCCR	3 cut(s)	72, 150, 737
AcuI	CTGAAG	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	62, 616, 617
AgsI	TTSAA	3 cut(s)	319, 522, 574
AjnI	CCWGG	2 cut(s)	676, 758
AluBI	AGCT	5 cut(s)	265, 365, 392, 442, 512
AluI	AGCT	5 cut(s)	265, 365, 392, 442, 512
Alw21I	GWGCWC	2 cut(s)	676, 727
AlwI	GGATC	2 cut(s)	12, 711
AlwNI	CAGNNNCTG	1 cut(s)	787
AoxI	GGCC	4 cut(s)	72, 150, 600, 737
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	766
Bbv12I	GWGCWC	2 cut(s)	676, 727
BbvCI	CCTCAGC	1 cut(s)	393
BccI	CCATC	3 cut(s)	112, 118, 161
BciT130I	CCWGG	2 cut(s)	678, 760
BfaI	CTAG	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	678, 760
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	678, 760
BmsI	GCATC	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	597, 677, 734, 758, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 616, 617
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	401, 698
BseBI	CCWGG	2 cut(s)	678, 760
BseDI	CCNNGG	5 cut(s)	597, 677, 734, 758, 759
BseGI	GGATG	6 cut(s)	104, 153, 379, 606, 661, 687
BseLI	CCNNNNNNNGG	3 cut(s)	62, 616, 617
BseMII	CTCAG	2 cut(s)	384, 779
BseNI	ACTGG	2 cut(s)	401, 698
BseRI	GAGGAG	3 cut(s)	90, 496, 593
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	4 cut(s)	74, 152, 602, 739
BsiHKAI	GWGCWC	2 cut(s)	676, 727
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	597, 754
BslI	CCNNNNNNNGG	3 cut(s)	62, 616, 617
BsmFI	GGGAC	2 cut(s)	597, 754
BsnI	GGCC	4 cut(s)	74, 152, 602, 739
Bsp1286I	GDGCHC	3 cut(s)	676, 727, 766
Bsp143I	GATC	3 cut(s)	4, 684, 703
BspACI	CCGC	2 cut(s)	626, 785
BspANI	GGCC	4 cut(s)	74, 152, 602, 739
BspCNI	CTCAG	2 cut(s)	385, 778
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	2 cut(s)	12, 711
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	401, 698
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	5 cut(s)	597, 677, 734, 758, 759
BssMI	GATC	3 cut(s)	4, 684, 703
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	678, 760
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	393, 765
BstF5I	GGATG	6 cut(s)	104, 153, 379, 606, 661, 687
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	3 cut(s)	7, 687, 706
BstMBI	GATC	3 cut(s)	4, 684, 703
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 37, 223, 250, 259, 448, 793, 796
BstNI	CCWGG	2 cut(s)	678, 760
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	676, 758
BsuRI	GGCC	4 cut(s)	74, 152, 602, 739
BtsCI	GGATG	6 cut(s)	104, 153, 379, 606, 661, 687
BtsIMutI	CAGTG	2 cut(s)	408, 705
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	787
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	4 cut(s)	358, 420, 456, 754
DdeI	CTNAG	2 cut(s)	393, 765
DpnI	GATC	3 cut(s)	6, 686, 705
DpnII	GATC	3 cut(s)	4, 684, 703
EaeI	YGGCCR	3 cut(s)	72, 150, 737
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	676, 758
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	4 cut(s)	361, 423, 459, 757
FaiI	YATR	9 cut(s)	96, 359, 421, 457, 640, 648, 720, 746, 755
FaqI	GGGAC	2 cut(s)	597, 754
FatI	CATG	4 cut(s)	357, 419, 455, 753
FokI	GGATG	6 cut(s)	91, 140, 386, 593, 648, 694
FriOI	GRGCYC	1 cut(s)	766
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	4 cut(s)	74, 152, 602, 739
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	361, 423, 459, 757
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HinfI	GANTC	2 cut(s)	322, 460
HpaII	CCGG	1 cut(s)	75
Hpy188I	TCNGA	5 cut(s)	13, 87, 123, 204, 380
Hpy188III	TCNNGA	3 cut(s)	135, 319, 358
HpyAV	CCTTC	2 cut(s)	168, 341
HpyCH4V	TGCA	3 cut(s)	292, 413, 509
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 37, 223, 250, 259, 448, 793, 796
HpyF3I	CTNAG	2 cut(s)	393, 765
Hsp92II	CATG	4 cut(s)	361, 423, 459, 757
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	4, 684, 703
LmnI	GCTCC	5 cut(s)	103, 124, 403, 439, 679
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	3 cut(s)	6, 686, 705
MboI	GATC	3 cut(s)	4, 684, 703
MboII	GAAGA	1 cut(s)	482
MhlI	GDGCHC	3 cut(s)	676, 727, 766
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	3 cut(s)	190, 345, 829
MluNI	TGGCCA	1 cut(s)	152
MnlI	CCTC	9 cut(s)	111, 150, 364, 388, 474, 571, 574, 744, 786
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	152
MspA1I	CMGCKG	3 cut(s)	392, 512, 787
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	678, 760
MvaI	CCWGG	2 cut(s)	678, 760
MwoI	GCNNNNNNNGC	8 cut(s)	34, 37, 223, 250, 259, 448, 793, 796
NdeII	GATC	3 cut(s)	4, 684, 703
NlaIII	CATG	4 cut(s)	361, 423, 459, 757
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	423
PagI	TCATGA	1 cut(s)	357
PasI	CCCWGGG	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	322, 460
Psp6I	CCWGG	2 cut(s)	676, 758
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	2 cut(s)	676, 758
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	787
PvuII	CAGCTG	2 cut(s)	392, 512
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	4, 684, 703
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	678, 760
SduI	GDGCHC	3 cut(s)	676, 727, 766
SetI	ASST	9 cut(s)	142, 267, 273, 367, 394, 444, 514, 745, 778
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	611
Sse9I	AATT	3 cut(s)	190, 345, 829
SsiI	CCGC	2 cut(s)	626, 785
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	676, 758
StyI	CCWWGG	1 cut(s)	597
TaqI	TCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	190, 345, 829
TauI	GCSGC	2 cut(s)	629, 787
TfiI	GAWTC	2 cut(s)	322, 460
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	408, 705
TseFI	GTSAC	1 cut(s)	592
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	374, 421, 742
TspRI	CASTG	2 cut(s)	408, 705
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.