Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

9057069 .. 9059776

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14690.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATCACTCGGAACAAACACAACAGCAGCTGCAGCAGCAGCAACAACAACAACACCACCACCAACAACAGCCGCCTGTGGTTGGTGTTGTGGCTGGTTCTGGTCAGATGTCATATGCTCCTCCGTCCTATCAAACTGCTCCAATGGTGGCTTCTGGAACTCCTACTGTGGCCATCCCTTCCCCAACACAGCCACCCCCGGCTTTCTCTAATTCCCCACATCAGATTGCCTACCAGCAAGCACATCACTTCCACAACCAACAGCAGCAGCAGCAACAACAGCAGCTTCAGGTGTTCTGGGGCAACCAAATGCAAGACATTGAGCAAACAACTGACTTTAAGAATCACAGCCTTCCACTTGCTAGAATTAAGAAAATCATGAAAGCTGATGAGGATGTTCGAATGATATCTGCTGAGGCTCCAGTGATATTTGCAAAGGCATGTGAAATATTCATCTTGGAGCTGACTTTGCGCTCATGGATTCACACAGAAGAGAACAAGAGGAGGACATTACAAAAGAATGATATTGCTGCTGCTATTTCAAGGACTGATGTGTTTGATTTTTTGGTTGACATTATCCCGAGAGATGAGTTGAAAGAGGAGGGACTTGGAGTGACCAAGGCCAACATCCCTGTGGTGGGTTCTGCAGCAGATCTTCCATATTATTATGTTCCTCCACAGCATCCTGTTGGTGCTCCTGGGATGATCATGGGGAAGCCAGTGGATCAAGTAACAATGTATGGTGCTCAACAGCCTAGGCCACCTATGGCTTTCATGCCCTGGACTCAGTCCCAACCTCAGCAGCCACTGCCACAGCAGCAGCAACAAACCCAACAGCAGCAGACAGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

285

Amino Acids

32.03

Weight (kDa)

5.96

Isoelectric Point (pI)

72.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	109 - 180	1e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	117 - 180	5.8e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	2 cut(s)	12, 732
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	83, 637, 638
AgsI	TTSAA	2 cut(s)	543, 595
AjnI	CCWGG	2 cut(s)	697, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AluBI	AGCT	4 cut(s)	31, 286, 386, 463
AluI	AGCT	4 cut(s)	31, 286, 386, 463
Alw21I	GWGCWC	2 cut(s)	697, 748
AlwI	GGATC	2 cut(s)	12, 732
AlwNI	CAGNNNCTG	2 cut(s)	31, 808
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	3 cut(s)	171, 621, 758
AspA2I	CCTAGG	1 cut(s)	755
AspLEI	GCGC	1 cut(s)	474
AsuC2I	CCSGG	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	580
AvrII	CCTAGG	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	697, 748
BbvCI	CCTCAGC	2 cut(s)	414, 798
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	699, 781
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	2 cut(s)	363, 756
BfmI	CTRYAG	2 cut(s)	32, 645
BglII	AGATCT	1 cut(s)	652
BlnI	CCTAGG	1 cut(s)	755
Bme1390I	CCNGG	3 cut(s)	200, 699, 781
BmeT110I	CYCGRG	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	3 cut(s)	200, 699, 781
BmsI	GCATC	1 cut(s)	691
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	414, 798
Bpu14I	TTCGAA	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	5 cut(s)	198, 618, 698, 755, 779
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 637, 638
Bse1I	ACTGG	2 cut(s)	422, 719
BseBI	CCWGG	2 cut(s)	699, 781
BseDI	CCNNGG	5 cut(s)	198, 618, 698, 755, 779
BseGI	GGATG	5 cut(s)	174, 400, 627, 682, 708
BseLI	CCNNNNNNNGG	3 cut(s)	83, 637, 638
BseMII	CTCAG	3 cut(s)	405, 800, 812
BseNI	ACTGG	2 cut(s)	422, 719
BseRI	GAGGAG	3 cut(s)	111, 517, 614
BshFI	GGCC	3 cut(s)	173, 623, 760
BsiHKAI	GWGCWC	2 cut(s)	697, 748
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	618, 775
BslI	CCNNNNNNNGG	3 cut(s)	83, 637, 638
BsmFI	GGGAC	2 cut(s)	618, 775
BsnI	GGCC	3 cut(s)	173, 623, 760
BsoBI	CYCGRG	1 cut(s)	580
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	697, 748
Bsp143I	GATC	4 cut(s)	4, 652, 705, 724
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	173, 623, 760
BspCNI	CTCAG	3 cut(s)	406, 799, 811
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	2 cut(s)	36, 649
BspPI	GGATC	2 cut(s)	12, 732
BspT104I	TTCGAA	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	422, 719
BssECI	CCNNGG	5 cut(s)	198, 618, 698, 755, 779
BssMI	GATC	4 cut(s)	4, 652, 705, 724
BssT1I	CCWWGG	2 cut(s)	618, 755
Bst2UI	CCWGG	2 cut(s)	699, 781
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	808
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	414, 786, 798
BstF5I	GGATG	5 cut(s)	174, 400, 627, 682, 708
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	4 cut(s)	7, 655, 708, 727
BstMBI	GATC	4 cut(s)	4, 652, 705, 724
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 37, 40, 271, 280, 469, 808, 817
BstNI	CCWGG	2 cut(s)	699, 781
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	3 cut(s)	198, 697, 779
BstSFI	CTRYAG	2 cut(s)	32, 645
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	173, 623, 760
BtsCI	GGATG	5 cut(s)	174, 400, 627, 682, 708
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	3 cut(s)	429, 726, 806
Cac8I	GCNNGC	1 cut(s)	240
CaiI	CAGNNNCTG	2 cut(s)	31, 808
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	474
CviAII	CATG	5 cut(s)	379, 441, 477, 709, 775
DdeI	CTNAG	3 cut(s)	414, 786, 798
DpnI	GATC	4 cut(s)	6, 654, 707, 726
DpnII	GATC	4 cut(s)	4, 652, 705, 724
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	618, 755
Eco32I	GATATC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	697, 779
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	618, 755
ErhI	CCWWGG	2 cut(s)	618, 755
FaeI	CATG	5 cut(s)	382, 444, 480, 712, 778
FaqI	GGGAC	2 cut(s)	618, 775
FatI	CATG	5 cut(s)	378, 440, 476, 708, 774
FauNDI	CATATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	705
FokI	GGATG	5 cut(s)	161, 407, 614, 669, 715
FspBI	CTAG	2 cut(s)	363, 756
GlaI	GCGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	173, 623, 760
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	5 cut(s)	382, 444, 480, 712, 778
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	3 cut(s)	343, 481, 784
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	13, 108, 225
Hpy188III	TCNNGA	3 cut(s)	156, 379, 580
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	2 cut(s)	189, 362
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	34, 313, 434, 647
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 37, 40, 271, 280, 469, 808, 817
HpyF3I	CTNAG	3 cut(s)	414, 786, 798
Hsp92II	CATG	5 cut(s)	382, 444, 480, 712, 778
HspAI	GCGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	4 cut(s)	4, 652, 705, 724
LmnI	GCTCC	5 cut(s)	124, 145, 424, 460, 700
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	363, 756
MaeIII	GTNAC	2 cut(s)	613, 730
MalI	GATC	4 cut(s)	6, 654, 707, 726
MboI	GATC	4 cut(s)	4, 652, 705, 724
MboII	GAAGA	2 cut(s)	503, 647
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	697, 748
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	3 cut(s)	211, 366, 850
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	778
MnlI	CCTC	9 cut(s)	132, 385, 409, 495, 498, 592, 595, 684, 807
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	2 cut(s)	339, 369
MslI	CAYNNNNRTG	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	3 cut(s)	200, 699, 781
MvaI	CCWGG	2 cut(s)	699, 781
MwoI	GCNNNNNNNGC	8 cut(s)	34, 37, 40, 271, 280, 469, 808, 817
NciI	CCSGG	1 cut(s)	200
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	4 cut(s)	4, 652, 705, 724
NlaIII	CATG	5 cut(s)	382, 444, 480, 712, 778
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	400
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	343, 481
PflFI	GACNNNGTC	1 cut(s)	787
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
Psp6I	CCWGG	2 cut(s)	697, 779
PspGI	CCWGG	2 cut(s)	697, 779
PspN4I	GGNNCC	1 cut(s)	420
PstI	CTGCAG	2 cut(s)	36, 649
PstNI	CAGNNNCTG	2 cut(s)	31, 808
PsuI	RGATCY	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	632
SaqAI	TTAA	2 cut(s)	339, 369
Sau3AI	GATC	4 cut(s)	4, 652, 705, 724
SchI	GAGTC	1 cut(s)	778
ScrFI	CCNGG	3 cut(s)	200, 699, 781
SduI	GDGCHC	2 cut(s)	697, 748
SetI	ASST	7 cut(s)	33, 288, 294, 388, 465, 766, 799
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	2 cut(s)	32, 645
SfuI	TTCGAA	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	632
Sse9I	AATT	3 cut(s)	211, 366, 850
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	2 cut(s)	363, 756
StyD4I	CCNGG	3 cut(s)	198, 697, 779
StyI	CCWWGG	2 cut(s)	618, 755
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	400
TasI	AATT	3 cut(s)	211, 366, 850
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	343, 481
Tru1I	TTAA	2 cut(s)	339, 369
Tru9I	TTAA	2 cut(s)	339, 369
TscAI	CASTG	3 cut(s)	429, 726, 813
TseFI	GTSAC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	3 cut(s)	395, 442, 763
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	3 cut(s)	429, 726, 813
Tth111I	GACNNNGTC	1 cut(s)	787
XceI	RCATGY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmaJI	CCTAGG	1 cut(s)	755
XspI	CTAG	2 cut(s)	363, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.