Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

7318206 .. 7321121

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G132200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAATCACTCAGAACAAACACTACAGCAACAGCAACAGGAGCAACACCATCAGCAGCAGCCTGTGGTGGGTGTTGTGGCAAGTGGAGGCCAAATGACATATGCACCTCCTTCCTATCAAACTGCTCCTATGGTAGCTTCTGGAACTCCTGCTGTGGCCGTCCCTTCCCCAACACAGCCCCCTGCCGCTTTCTCTAATTCCTCGCATCAGATTGCCTACCAGCAAGCCCAGCATTTCCACAACCAACAGCAGCAGCAACAACAGCAGCAGCTTCAAGTGTTCTGGGCCAACCAAATGCAAGATATTGAACAAGCATCTGACTTCAAGAATCACAGCCTTCCACTTGCAAGAATTAAGAAAATAATGAAAGCTGATGAGGATGTTCGAATGATATCTGCTGAGGCTCCAGTGATATTTGCAAAGGCATGTGAAATATTCATCCTGGAGCTGACTTTGCGCTCATGGATTCACACAGAGGAGAACAAAAGGAGGACGTTACAAAAGAATGATATTGCAGCTGCTATTTCGAGGACTGATGTCTTTGATTTTTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGAGTGACTAAGGCTACAATCCCGGTGGTGGGCTCCCCAGCAGATATTCCATACTATTATGTACCACCACAACATCCTGTGGGAGCTCCTGGGATGATCATGGGGAAGCCAGTGGATCAAGCGGCAATCTATGCTGCTCAACAGCCTCGACCACCTATGGCTTTCATGCCGTGGTCTCAGCCTCAACCTCAGCAGCCGCAGCAACAGCAACAGCAACAAGAAGCCCAACATCAGCAGACAGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

281

Amino Acids

31.4

Weight (kDa)

5.76

Isoelectric Point (pI)

72.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	186, 716, 791
AclWI	GGATC	1 cut(s)	717
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	3 cut(s)	68, 622, 623
AgsI	TTSAA	4 cut(s)	275, 308, 325, 580
AjnI	CCWGG	2 cut(s)	441, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	6 cut(s)	137, 271, 371, 448, 518, 680
AluI	AGCT	6 cut(s)	137, 271, 371, 448, 518, 680
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	1 cut(s)	717
AoxI	GGCC	3 cut(s)	88, 156, 285
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	617
AsuII	TTCGAA	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	629, 682
Bbv12I	GWGCWC	1 cut(s)	682
BbvCI	CCTCAGC	2 cut(s)	399, 783
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	143, 748
BciT130I	CCWGG	2 cut(s)	443, 684
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	774
BfmI	CTRYAG	1 cut(s)	23
Bme1390I	CCNGG	3 cut(s)	443, 617, 684
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	405, 628
BmrFI	CCNGG	3 cut(s)	443, 617, 684
BmsI	GCATC	2 cut(s)	214, 323
BoxI	GACNNNNGTC	1 cut(s)	536
BpmI	CTGGAG	2 cut(s)	390, 464
Bpu10I	CCTNAGC	2 cut(s)	399, 783
Bpu14I	TTCGAA	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	617
BsaI	GGTCTC	1 cut(s)	774
BsaJI	CCNNGG	2 cut(s)	683, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 622, 623
Bse1I	ACTGG	2 cut(s)	407, 704
BseBI	CCWGG	2 cut(s)	443, 684
BseDI	CCNNGG	2 cut(s)	683, 764
BseGI	GGATG	4 cut(s)	385, 438, 667, 693
BseLI	CCNNNNNNNGG	3 cut(s)	68, 622, 623
BseMII	CTCAG	4 cut(s)	24, 390, 785, 797
BseNI	ACTGG	2 cut(s)	407, 704
BseRI	GAGGAG	1 cut(s)	491
BseYI	CCCAGC	2 cut(s)	228, 631
BshFI	GGCC	3 cut(s)	90, 158, 287
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	2 cut(s)	146, 603
BslI	CCNNNNNNNGG	3 cut(s)	68, 622, 623
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	2 cut(s)	146, 603
BsnI	GGCC	3 cut(s)	90, 158, 287
Bso31I	GGTCTC	1 cut(s)	774
Bsp119I	TTCGAA	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	629, 682
Bsp143I	GATC	2 cut(s)	690, 709
BspACI	CCGC	3 cut(s)	186, 716, 791
BspANI	GGCC	3 cut(s)	90, 158, 287
BspCNI	CTCAG	4 cut(s)	23, 391, 784, 796
BspLI	GGNNCC	2 cut(s)	405, 628
BspPI	GGATC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	407, 704
BssECI	CCNNGG	2 cut(s)	683, 764
BssMI	GATC	2 cut(s)	690, 709
Bst2UI	CCWGG	2 cut(s)	443, 684
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	5 cut(s)	10, 399, 603, 771, 783
BstDSI	CCRYGG	1 cut(s)	764
BstF5I	GGATG	4 cut(s)	385, 438, 667, 693
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	693, 712
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	2 cut(s)	690, 709
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 229, 262, 454, 725, 793, 799
BstNI	CCWGG	2 cut(s)	443, 684
BstNSI	RCATGY	1 cut(s)	429
BstPAI	GACNNNNGTC	1 cut(s)	536
BstSCI	CCNGG	3 cut(s)	441, 615, 682
BstSFI	CTRYAG	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	90, 158, 287
BtgI	CCRYGG	1 cut(s)	764
BtsCI	GGATG	4 cut(s)	385, 438, 667, 693
BtsIMutI	CAGTG	2 cut(s)	414, 711
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	656
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	4 cut(s)	426, 462, 694, 760
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	5 cut(s)	10, 399, 603, 771, 783
DpnI	GATC	2 cut(s)	692, 711
DpnII	GATC	2 cut(s)	690, 709
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	680
Eco24I	GRGCYC	2 cut(s)	629, 682
Eco31I	GGTCTC	1 cut(s)	774
Eco32I	GATATC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	441, 682
EcoRV	GATATC	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	629, 682
FaeI	CATG	4 cut(s)	429, 465, 697, 763
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FaqI	GGGAC	2 cut(s)	146, 603
FatI	CATG	4 cut(s)	425, 461, 693, 759
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	4 cut(s)	392, 425, 654, 700
FriOI	GRGCYC	2 cut(s)	629, 682
GlaI	GCGC	1 cut(s)	458
GsaI	CCCAGC	2 cut(s)	232, 635
GsuI	CTGGAG	2 cut(s)	390, 464
HaeIII	GGCC	3 cut(s)	90, 158, 287
HapII	CCGG	1 cut(s)	617
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	4 cut(s)	429, 465, 697, 763
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HinfI	GANTC	3 cut(s)	4, 328, 466
HpaII	CCGG	1 cut(s)	617
Hpy188I	TCNGA	3 cut(s)	13, 210, 319
Hpy188III	TCNNGA	2 cut(s)	141, 325
HpyAV	CCTTC	3 cut(s)	120, 174, 347
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	104, 298, 347, 419, 515
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 229, 262, 454, 725, 793, 799
HpyF3I	CTNAG	5 cut(s)	10, 399, 603, 771, 783
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	429, 465, 697, 763
HspAI	GCGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	690, 709
LmnI	GCTCC	7 cut(s)	40, 130, 409, 445, 632, 677, 685
LweI	GCATC	2 cut(s)	214, 323
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	2 cut(s)	495, 598
MalI	GATC	2 cut(s)	692, 711
MboI	GATC	2 cut(s)	690, 709
MboII	GAAGA	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	629, 682
MluCI	AATT	2 cut(s)	196, 351
MseI	TTAA	2 cut(s)	354, 841
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	3 cut(s)	443, 617, 684
MvaI	CCWGG	2 cut(s)	443, 684
MwoI	GCNNNNNNNGC	7 cut(s)	40, 229, 262, 454, 725, 793, 799
NciI	CCSGG	1 cut(s)	617
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	2 cut(s)	690, 709
NlaIII	CATG	4 cut(s)	429, 465, 697, 763
NlaIV	GGNNCC	2 cut(s)	405, 628
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	1 cut(s)	429
NspV	TTCGAA	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	4, 328, 466
PfoI	TCCNGGA	1 cut(s)	441
PshAI	GACNNNNGTC	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	682
Psp6I	CCWGG	2 cut(s)	441, 682
PspFI	CCCAGC	2 cut(s)	228, 631
PspGI	CCWGG	2 cut(s)	441, 682
PspN4I	GGNNCC	2 cut(s)	405, 628
PspPI	GGNCC	1 cut(s)	285
PsrI	GAACNNNNNNTAC	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	2 cut(s)	354, 841
Sau3AI	GATC	2 cut(s)	690, 709
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	3 cut(s)	443, 617, 684
SduI	GDGCHC	2 cut(s)	629, 682
SfaNI	GCATC	2 cut(s)	214, 323
SfcI	CTRYAG	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	385
Sse9I	AATT	2 cut(s)	196, 351
SsiI	CCGC	3 cut(s)	186, 716, 791
SspI	AATATT	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	682
StyD4I	CCNGG	3 cut(s)	441, 615, 682
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	3 cut(s)	385, 527, 742
TasI	AATT	2 cut(s)	196, 351
TauI	GCSGC	3 cut(s)	188, 719, 793
TfiI	GAWTC	3 cut(s)	4, 328, 466
Tru1I	TTAA	2 cut(s)	354, 841
Tru9I	TTAA	2 cut(s)	354, 841
TscAI	CASTG	2 cut(s)	414, 711
TseFI	GTSAC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	17, 380, 427, 748
TspRI	CASTG	2 cut(s)	414, 711
XceI	RCATGY	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.