Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

30806582 .. 30809166

Gene Structure 2585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1208800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATCACTCAGAACAAACACTACAACAACAGCAACAGCACCATCAACAGCAGCCTGCAGTTGGTGTCGTAGCAGGTTCTGGTCAAATGACATCCTATCCTCCTCCTTCCTATCAAACTGCTCCCATGGTGGCTTCTGGAACTCCTGCCGTGTCTGTCCCTTCCCCAACGCACCCTCCCACCACTTTCCCTGATCCGTCACATCAGCTTGCCTACCAGAAAATACAGCACTTTCACCACCAACAACAGGTGCAACAACAGATGCAGCTTCAAGAGTTCTGGTCGGACCAAATGCAAGACATTGAGAAAGCATCCGACTTCAAGAATCACAGCCTTCCACTTGCTAGAATTAAGAAAATAATGAAAGCTGATGAGGATGTTCGAATGATATCTGCTGAGGCTCCAGTTATATTTGCGAAGGCATGCGAAATATTCATATTGGAGCTGACTTTGCGCTCGTGGATTCACACAGAGGAGAACAAAAGGAGGACATTACAAAAGAATGATATCGCAGCAGCTATTTCAAGGACTGACGTCTTTGATTTTTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAAGAGGCACTTGGCGTGACCAAGGCTACCCTCCCAGTGGTGGGTTCCCCGGCAGATGTTCCATACTATTATGTTCCACAGCAGCATCCTGTGGGAGCTCCTGGGATGATCATGGGGAAGCCAGTTGATCAAGCAGCAATGTATGCTTCTCAACAGCCTCGACCACCTGTGTCTTTCATGCCGTGGGCTCAGTCTCAACCTCAACAGCCGCAGCAACAGCAACAACAGGCCCAACAGCAGCAGACGGACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

278

Amino Acids

31.17

Weight (kDa)

5.84

Isoelectric Point (pI)

70.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	102 - 174	8.5e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	111 - 174	5.5e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	65
AciI	CCGC	1 cut(s)	788
AclWI	GGATC	2 cut(s)	12, 188
AcyI	GRCGYC	1 cut(s)	534
AfiI	CCNNNNNNNGG	5 cut(s)	62, 247, 616, 619, 620
AgsI	TTSAA	4 cut(s)	272, 322, 525, 577
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AluBI	AGCT	6 cut(s)	208, 268, 368, 445, 518, 677
AluI	AGCT	6 cut(s)	208, 268, 368, 445, 518, 677
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	12, 188
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	807
ApeKI	GCWGC	8 cut(s)	52, 265, 512, 515, 661, 713, 790, 817
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	286, 808
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	679, 769
BauI	CACGAG	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	8 cut(s)	64, 277, 524, 527, 673, 725, 802, 829
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	2 cut(s)	134, 745
BciT130I	CCWGG	1 cut(s)	681
BclI	TGATCA	2 cut(s)	687, 706
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	9 cut(s)	53, 266, 513, 516, 662, 714, 788, 791, 818
BlsI	GCNGC	9 cut(s)	54, 267, 514, 517, 663, 715, 789, 792, 819
Bme1390I	CCNGG	2 cut(s)	629, 681
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	286, 808
BmiI	GGNNCC	2 cut(s)	402, 625
BmrFI	CCNGG	2 cut(s)	629, 681
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	3 cut(s)	252, 320, 673
BmuI	ACTGGG	1 cut(s)	608
BoxI	GACNNNNGTC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	534
BsaJI	CCNNGG	5 cut(s)	126, 600, 627, 680, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 247, 616, 619, 620
Bse1I	ACTGG	3 cut(s)	404, 614, 701
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	5 cut(s)	126, 600, 627, 680, 761
BseGI	GGATG	5 cut(s)	92, 311, 382, 664, 690
BseLI	CCNNNNNNNGG	5 cut(s)	62, 247, 616, 619, 620
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	3 cut(s)	24, 387, 782
BseNI	ACTGG	3 cut(s)	404, 614, 701
BseRI	GAGGAG	2 cut(s)	93, 488
BseXI	GCAGC	8 cut(s)	64, 277, 524, 527, 673, 725, 802, 829
BshFI	GGCC	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	5 cut(s)	62, 247, 616, 619, 620
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	809
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	679, 769
Bsp143I	GATC	4 cut(s)	4, 193, 687, 706
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	1 cut(s)	788
BspANI	GGCC	1 cut(s)	809
BspCNI	CTCAG	3 cut(s)	23, 388, 781
BspLI	GGNNCC	2 cut(s)	402, 625
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	2 cut(s)	12, 188
BspT104I	TTCGAA	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	3 cut(s)	404, 614, 701
BssECI	CCNNGG	5 cut(s)	126, 600, 627, 680, 761
BssMI	GATC	4 cut(s)	4, 193, 687, 706
BssNI	GRCGYC	1 cut(s)	534
BssSI	CACGAG	1 cut(s)	457
BssT1I	CCWWGG	2 cut(s)	126, 600
Bst2BI	CACGAG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	681
Bst6I	CTCTTC	1 cut(s)	576
BstACI	GRCGYC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	57, 210, 424
BstDEI	CTNAG	3 cut(s)	10, 396, 768
BstDSI	CCRYGG	2 cut(s)	126, 761
BstF5I	GGATG	5 cut(s)	92, 311, 382, 664, 690
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	4 cut(s)	7, 196, 690, 709
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	4 cut(s)	4, 193, 687, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	451, 722, 796
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	426
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	627, 679
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	8 cut(s)	64, 277, 524, 527, 673, 725, 802, 829
BsuRI	GGCC	1 cut(s)	809
BtgI	CCRYGG	2 cut(s)	126, 761
BtsCI	GGATG	5 cut(s)	92, 311, 382, 664, 690
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	3 cut(s)	57, 210, 424
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	286, 808
CviAII	CATG	4 cut(s)	127, 423, 691, 757
DdeI	CTNAG	3 cut(s)	10, 396, 768
DpnI	GATC	4 cut(s)	6, 195, 689, 708
DpnII	GATC	4 cut(s)	4, 193, 687, 706
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Ecl136II	GAGCTC	1 cut(s)	677
Eco130I	CCWWGG	2 cut(s)	126, 600
Eco24I	GRGCYC	2 cut(s)	679, 769
Eco32I	GATATC	2 cut(s)	390, 508
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	679
EcoRV	GATATC	2 cut(s)	390, 508
EcoT14I	CCWWGG	2 cut(s)	126, 600
EcoT38I	GRGCYC	2 cut(s)	679, 769
ErhI	CCWWGG	2 cut(s)	126, 600
FaeI	CATG	4 cut(s)	130, 426, 694, 760
FaiI	YATR	9 cut(s)	128, 410, 424, 437, 643, 651, 692, 723, 758
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	126, 422, 690, 756
FbaI	TGATCA	2 cut(s)	687, 706
Fnu4HI	GCNGC	9 cut(s)	53, 266, 513, 516, 662, 714, 788, 791, 818
FokI	GGATG	5 cut(s)	79, 298, 389, 651, 697
FriOI	GRGCYC	2 cut(s)	679, 769
Fsp4HI	GCNGC	9 cut(s)	53, 266, 513, 516, 662, 714, 788, 791, 818
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	9 cut(s)	53, 266, 513, 516, 662, 714, 788, 791, 818
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	809
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	1 cut(s)	456
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	4 cut(s)	130, 426, 694, 760
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	325, 463
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	13, 286, 316
Hpy188III	TCNNGA	3 cut(s)	138, 272, 322
HpyAV	CCTTC	4 cut(s)	117, 171, 344, 412
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	4 cut(s)	59, 253, 265, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	451, 722, 796
HpyF3I	CTNAG	3 cut(s)	10, 396, 768
HpySE526I	ACGT	1 cut(s)	534
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	4 cut(s)	130, 426, 694, 760
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	2 cut(s)	687, 706
Kzo9I	GATC	4 cut(s)	4, 193, 687, 706
LmnI	GCTCC	5 cut(s)	127, 406, 442, 674, 682
Lsp1109I	GCAGC	8 cut(s)	64, 277, 524, 527, 673, 725, 802, 829
LweI	GCATC	3 cut(s)	252, 320, 673
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	198, 595
MalI	GATC	4 cut(s)	6, 195, 689, 708
MboI	GATC	4 cut(s)	4, 193, 687, 706
MboII	GAAGA	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	679, 769
MluCI	AATT	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	264, 339
MseI	TTAA	2 cut(s)	351, 832
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	629, 681
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	451, 722, 796
NciI	CCSGG	1 cut(s)	629
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	4, 193, 687, 706
NlaIII	CATG	4 cut(s)	130, 426, 694, 760
NlaIV	GGNNCC	2 cut(s)	402, 625
NmuCI	GTSAC	2 cut(s)	198, 595
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	325, 463
PkrI	GCNGC	9 cut(s)	54, 267, 514, 517, 663, 715, 789, 792, 819
PshAI	GACNNNNGTC	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	2 cut(s)	402, 625
PspPI	GGNCC	2 cut(s)	286, 808
PsrI	GAACNNNNNNTAC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	679
SaqAI	TTAA	2 cut(s)	351, 832
SatI	GCNGC	9 cut(s)	53, 266, 513, 516, 662, 714, 788, 791, 818
Sau3AI	GATC	4 cut(s)	4, 193, 687, 706
Sau96I	GGNCC	2 cut(s)	286, 808
ScrFI	CCNGG	2 cut(s)	629, 681
SduI	GDGCHC	2 cut(s)	679, 769
SfaNI	GCATC	3 cut(s)	252, 320, 673
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	286
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	788
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	679
StyD4I	CCNGG	2 cut(s)	627, 679
StyI	CCWWGG	2 cut(s)	126, 600
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	2 cut(s)	382, 739
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	2 cut(s)	325, 463
Tru1I	TTAA	2 cut(s)	351, 832
Tru9I	TTAA	2 cut(s)	351, 832
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	2 cut(s)	198, 595
TseI	GCWGC	8 cut(s)	52, 265, 512, 515, 661, 713, 790, 817
Tsp45I	GTSAC	2 cut(s)	198, 595
TspDTI	ATGAA	3 cut(s)	377, 424, 745
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	286
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	1 cut(s)	345
ZraI	GACGTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.