AT1G58025

bromo domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
21457667 .. 21462243
4577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58025.5

Sequence Viewer

Length: 1719 bp
ATGAAGCGTAAAAGAGGACATAAGAAAGGGAAGAAGTCTAAGACTATCAATGAACAAGGGAACTTGAACGAGTCAACTGAAAACGCGGAGAATCAAACCTCTGAGCATAGTTCTGAAGCTCCTGTTGAGTGTGAGAATAGTGAACTTGAATCTAAAATGGAGGTTGATGCTCCTTCACCTATTGCTGGAAGTGTAGATCTAGCTGATAATATAGCGGCCAAGTCTGTTGCGCGTGTTAAGGTTAAATTGAAGACTTCGAAAGCACCTGAACCCAATGAGACATTGCGTGATGATATCGATAAGAGTAGTTCTCAAGCGGTGTTAGAAAAACCTGTTGTGCCTGTTGAGAAAAAGGAGGAATTTGTTCCTCGTTTGCCTGAGAGGAAGCCGGTGTTTCTGAATGTTTACAGGAAAACTAAAGGTATAAGGATAAAGTCTTCGAAGGCGGTTGATGGGTCTAGCTCGGTTACTGAGAAGAGTGCTACTGATACTGTCAAGGTTCAGGATGTGGTAGTAGGTCAGAAGGATACGAAAACGTCTGAGGAGAATTCTCAAGCTAGTAAGAAAGAGGCGGAAATTGCAACGATTTCTTTGCAGAAAGAGGAGAAGAAGACTGATCAAAATTTACGATACAATAAGCAAGAACTGGAAGATTCTCTTATTGTGATCAAGAAGATTATGAAGATGGAGGCTGCTGATCCTTTTAATGTTCCTGTCAATCCAGAAGCTCTTGGAATTCCTGACTATTTCGATATTATCAAGACACCTATGGATTTTGGAACAATATGCAACAATTTTGAGAAAGGCAACAAGTATATGAATTCTGAGGATGTTTACAAGGATGTCAACTACATTTGGAATAACTGTTCCAAGTACAATAAGAAAGGTGATTATATTGTGGATCTGATGAAGCGAGTGAAGAAAAATTTCATGAAGTACTGGACTTCAGCAGGGTTGTATACTGAGCAATCAGCAGAAAATACAGAAGATGGTGGAAAGGCATCCACAAAGCAGAAGAGTCATAAACGCCATGGAAGGCACCACAAGAGTGATTGCATGTGTGCGATATGTGTTTTGAAGCGTCGTAAAAGAGAACGTGAACGAGATTCTGGAGCTCAAGAGGAGTCTTCACCTGCGGGAAGTCCGTCTGTGGATAATTCATCAGTAAACATGGGTGAGGACATGGATATTGATGTTGACAAGAAACCTGAACAAGAAAAAACAGAAATCGTGGAACTAGATAGTCCGGTGTCAAAAACACAAAGAGTGATTGAAAACAAACAAGAGGTGGAGGAAGAGGAAAACGTCGAAGTGGAGAGTGAAAATAAAACCAAAGCTAATGTAGAGGACAAGACTCAGTCGATTGATAGATCAATGGAAGAGACTGGCGATGAGCCTGTGAATAGTGCTGCAGAGAAATTGGTTGTTTTAGCTTCCCTTGAAGGTCCAAAATCGACTCAGAATGAGGAAGAAGAGAAGGAAAAACGACTTCAAGAGCAAAAGAAACGGCTGGAGTTAGAGCGTAAAGAATGGAGAATGAAGATGCAAGAAAAGTTCCAAGTCAGAAACCCGCAGCTTCTAAGTCTCTGTGAAACTCTCTTCCCTAATGACAACAACCACAATTCCGTATGGAACGGACCTCACTCACTGTTTAGACGTCGCGGAGGTTCAAATCGTAGTAGTGCTTTACACAAAGCAGTTGAGTCACTGATGAAGTAG

Protein Analysis

572

Amino Acids

64.85

Weight (kDa)

6.42

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 222 - 300 3.1e-16 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1141
AatII GACGTC 1 cut(s) 1660
Acc36I ACCTGC 1 cut(s) 1141
AccB1I GGYRCC 1 cut(s) 1038
AccI GTMKAC 1 cut(s) 959
AccII CGCG 3 cut(s) 86, 232, 1662
AciI CCGC 8 cut(s) 86, 215, 317, 446, 572, 1136, 1571, 1662
AclWI GGATC 2 cut(s) 692, 909
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 6 cut(s) 359, 547, 622, 735, 820, 925
AcuI CTGAAG 2 cut(s) 135, 930
AcyI GRCGYC 1 cut(s) 1657
AfaI GTAC 2 cut(s) 875, 938
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 8 cut(s) 67, 149, 250, 1078, 1274, 1442, 1493, 1671
AleI CACNNNNGTG 1 cut(s) 1047
AloI GAACNNNNNNTCC 2 cut(s) 850, 882
AluBI AGCT 9 cut(s) 119, 203, 462, 557, 728, 1115, 1337, 1433, 1576
AluI AGCT 9 cut(s) 119, 203, 462, 557, 728, 1115, 1337, 1433, 1576
Alw21I GWGCWC 1 cut(s) 1117
Alw26I GTCTC 3 cut(s) 272, 1376, 1589
AlwI GGATC 2 cut(s) 692, 909
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 3 cut(s) 692, 1409, 1573
ApoI RAATTY 6 cut(s) 359, 547, 622, 735, 820, 925
Asp700I GAANNNNTTC 2 cut(s) 363, 926
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 1445, 1637
AsuHPI GGTGA 4 cut(s) 168, 899, 1122, 1187
AsuII TTCGAA 2 cut(s) 257, 440
AvaII GGWCC 2 cut(s) 1445, 1637
BanI GGYRCC 1 cut(s) 1038
BanII GRGCYC 1 cut(s) 1117
BbsI GAAGAC 4 cut(s) 257, 429, 617, 1119
Bbv12I GWGCWC 1 cut(s) 1117
BbvI GCAGC 3 cut(s) 679, 1396, 1585
BccI CCATC 3 cut(s) 446, 679, 983
BceAI ACGGC 1 cut(s) 1523
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciVI GTATCC 1 cut(s) 520
BclI TGATCA 2 cut(s) 616, 666
BcoDI GTCTC 3 cut(s) 272, 1376, 1589
BfaI CTAG 4 cut(s) 200, 459, 558, 1238
BfmI CTRYAG 1 cut(s) 1410
BfuAI ACCTGC 1 cut(s) 1141
BfuI GTATCC 1 cut(s) 520
BglII AGATCT 1 cut(s) 196
BisI GCNGC 4 cut(s) 216, 693, 1410, 1574
BlsI GCNGC 4 cut(s) 217, 694, 1411, 1575
BmcAI AGTACT 1 cut(s) 938
Bme18I GGWCC 2 cut(s) 1445, 1637
BmgT120I GGNCC 2 cut(s) 1445, 1637
BmiI GGNNCC 1 cut(s) 1040
BmsI GCATC 3 cut(s) 157, 1010, 1533
BpiI GAAGAC 4 cut(s) 257, 429, 617, 1119
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 2 cut(s) 1131, 1532
Bpu14I TTCGAA 2 cut(s) 257, 440
BpuEI CTTGAG 3 cut(s) 297, 537, 1101
Bsa29I ATCGAT 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 1657
BsaJI CCNNGG 1 cut(s) 1030
BsaWI WCCGGW 1 cut(s) 1246
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 3 cut(s) 651, 944, 1390
Bse3DI GCAATG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 1030
BseGI GGATG 4 cut(s) 511, 835, 847, 1001
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 8 cut(s) 93, 369, 462, 531, 816, 954, 1370, 1472
BseNI ACTGG 3 cut(s) 651, 944, 1390
BseRI GAGGAG 3 cut(s) 557, 617, 1136
BseXI GCAGC 3 cut(s) 679, 1396, 1585
Bsh1236I CGCG 3 cut(s) 86, 232, 1662
BshFI GGCC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 1038
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 1117
BsiSI CCGG 2 cut(s) 389, 1247
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 3 cut(s) 272, 1376, 1589
BsnI GGCC 1 cut(s) 218
Bsp119I TTCGAA 2 cut(s) 257, 440
Bsp1286I GDGCHC 1 cut(s) 1117
Bsp143I GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
Bsp19I CCATGG 1 cut(s) 1030
BspACI CCGC 8 cut(s) 86, 215, 317, 446, 572, 1136, 1571, 1662
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 8 cut(s) 94, 370, 463, 532, 817, 955, 1369, 1471
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 3 cut(s) 86, 232, 1662
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 1040
BspMAI CTGCAG 1 cut(s) 1414
BspMI ACCTGC 1 cut(s) 1141
BspPI GGATC 2 cut(s) 692, 909
BspT104I TTCGAA 2 cut(s) 257, 440
BspT107I GGYRCC 1 cut(s) 1038
BsrDI GCAATG 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 3 cut(s) 651, 944, 1390
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 1030
BssMI GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
BssNAI GTATAC 1 cut(s) 960
BssNI GRCGYC 1 cut(s) 1657
BssT1I CCWWGG 1 cut(s) 1030
Bst1107I GTATAC 1 cut(s) 960
Bst4CI ACNGT 3 cut(s) 493, 866, 1650
Bst6I CTCTTC 6 cut(s) 470, 1010, 1290, 1374, 1467, 1604
BstACI GRCGYC 1 cut(s) 1657
BstBI TTCGAA 2 cut(s) 257, 440
BstDSI CCRYGG 1 cut(s) 1030
BstF5I GGATG 4 cut(s) 511, 835, 847, 1001
BstFNI CGCG 3 cut(s) 86, 232, 1662
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 6 cut(s) 199, 619, 669, 700, 904, 1373
BstMAI GTCTC 3 cut(s) 272, 1376, 1589
BstMBI GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 1060
BstSFI CTRYAG 1 cut(s) 1410
BstUI CGCG 3 cut(s) 86, 232, 1662
BstV1I GCAGC 3 cut(s) 679, 1396, 1585
BstV2I GAAGAC 4 cut(s) 257, 429, 617, 1119
BstX2I RGATCY 2 cut(s) 196, 901
BstYI RGATCY 2 cut(s) 196, 901
BstZ17I GTATAC 1 cut(s) 960
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 1030
BtgZI GCGATG 1 cut(s) 1404
BtsCI GGATG 4 cut(s) 511, 835, 847, 1001
BtsIMutI CAGTG 2 cut(s) 1646, 1706
BveI ACCTGC 1 cut(s) 1141
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 1445, 1637
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 1070
Csp6I GTAC 2 cut(s) 874, 937
CviAII CATG 5 cut(s) 931, 1031, 1057, 1171, 1183
CviQI GTAC 2 cut(s) 874, 937
DpnI GATC 6 cut(s) 198, 618, 668, 699, 903, 1372
DpnII GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 6 cut(s) 470, 1010, 1290, 1374, 1467, 1604
EarI CTCTTC 6 cut(s) 470, 1010, 1290, 1374, 1467, 1604
EciI GGCGGA 1 cut(s) 587
Ecl136II GAGCTC 1 cut(s) 1115
Eco130I CCWWGG 1 cut(s) 1030
Eco24I GRGCYC 1 cut(s) 1117
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 1445, 1637
Eco53kI GAGCTC 1 cut(s) 1115
Eco57I CTGAAG 2 cut(s) 135, 930
EcoICRI GAGCTC 1 cut(s) 1115
EcoRI GAATTC 3 cut(s) 547, 735, 820
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 1117
ErhI CCWWGG 1 cut(s) 1030
FaeI CATG 5 cut(s) 934, 1034, 1060, 1174, 1186
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 5 cut(s) 930, 1030, 1056, 1170, 1182
FauI CCCGC 2 cut(s) 1129, 1578
FbaI TGATCA 2 cut(s) 616, 666
FblI GTMKAC 1 cut(s) 959
Fnu4HI GCNGC 4 cut(s) 216, 693, 1410, 1574
FokI GGATG 4 cut(s) 518, 842, 854, 988
FriOI GRGCYC 1 cut(s) 1117
Fsp4HI GCNGC 4 cut(s) 216, 693, 1410, 1574
FspBI CTAG 4 cut(s) 200, 459, 558, 1238
GlaI GCGC 1 cut(s) 231
GluI GCNGC 4 cut(s) 216, 693, 1410, 1574
GsuI CTGGAG 2 cut(s) 1131, 1532
HaeIII GGCC 1 cut(s) 218
HapII CCGG 2 cut(s) 389, 1247
HgaI GACGC 1 cut(s) 1070
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 1657
Hin1II CATG 5 cut(s) 934, 1034, 1060, 1174, 1186
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 3 cut(s) 75, 847, 1198
HindII GTYRAC 3 cut(s) 75, 847, 1198
HpaII CCGG 2 cut(s) 389, 1247
HphI GGTGA 4 cut(s) 168, 899, 1122, 1187
Hpy166II GTNNAC 9 cut(s) 75, 143, 406, 835, 847, 960, 1100, 1168, 1198
Hpy188I TCNGA 9 cut(s) 103, 115, 399, 522, 541, 826, 906, 1461, 1565
Hpy188III TCNNGA 9 cut(s) 503, 670, 722, 740, 760, 931, 1110, 1118, 1493
Hpy8I GTNNAC 9 cut(s) 75, 143, 406, 835, 847, 960, 1100, 1168, 1198
Hpy99I CGWCG 3 cut(s) 1086, 1310, 1662
HpyAV CCTTC 6 cut(s) 183, 436, 517, 1029, 1436, 1471
HpyCH4III ACNGT 3 cut(s) 493, 866, 1650
HpyCH4IV ACGT 4 cut(s) 536, 1096, 1305, 1657
HpyCH4V TGCA 6 cut(s) 581, 595, 789, 1056, 1412, 1546
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpySE526I ACGT 4 cut(s) 536, 1096, 1305, 1657
Hsp92I GRCGYC 1 cut(s) 1657
Hsp92II CATG 5 cut(s) 934, 1034, 1060, 1174, 1186
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 2 cut(s) 616, 666
Kzo9I GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
LmnI GCTCC 3 cut(s) 124, 175, 1112
Lsp1109I GCAGC 3 cut(s) 679, 1396, 1585
LweI GCATC 3 cut(s) 157, 1010, 1533
MaeI CTAG 4 cut(s) 200, 459, 558, 1238
MaeII ACGT 4 cut(s) 536, 1096, 1305, 1657
MaeIII GTNAC 2 cut(s) 466, 1704
MalI GATC 6 cut(s) 198, 618, 668, 699, 903, 1372
MboI GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
MflI RGATCY 2 cut(s) 196, 901
MhlI GDGCHC 1 cut(s) 1117
MlyI GAGTC 6 cut(s) 80, 1027, 1133, 1348, 1450, 1712
MroXI GAANNNNTTC 2 cut(s) 363, 926
MseI TTAA 3 cut(s) 237, 243, 705
MslI CAYNNNNRTG 1 cut(s) 1047
MspI CCGG 2 cut(s) 389, 1247
MvnI CGCG 3 cut(s) 86, 232, 1662
MwoI GCNNNNNNNGC 1 cut(s) 578
NcoI CCATGG 1 cut(s) 1030
NdeII GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
NlaIII CATG 5 cut(s) 934, 1034, 1060, 1174, 1186
NlaIV GGNNCC 1 cut(s) 1040
NmuCI GTSAC 1 cut(s) 1704
NspI RCATGY 1 cut(s) 1060
NspV TTCGAA 2 cut(s) 257, 440
OliI CACNNNNGTG 1 cut(s) 1047
PagI TCATGA 1 cut(s) 930
PaqCI CACCTGC 1 cut(s) 1141
PdmI GAANNNNTTC 2 cut(s) 363, 926
PfeI GAWTC 4 cut(s) 91, 149, 653, 1106
PflFI GACNNNGTC 1 cut(s) 1357
PkrI GCNGC 4 cut(s) 217, 694, 1411, 1575
PleI GAGTC 6 cut(s) 79, 1026, 1132, 1348, 1450, 1711
PpsI GAGTC 6 cut(s) 79, 1026, 1132, 1348, 1450, 1711
Psp124BI GAGCTC 1 cut(s) 1117
PspN4I GGNNCC 1 cut(s) 1040
PspPI GGNCC 2 cut(s) 1445, 1637
PstI CTGCAG 1 cut(s) 1414
PsuI RGATCY 2 cut(s) 196, 901
PsyI GACNNNGTC 1 cut(s) 1357
RsaI GTAC 2 cut(s) 875, 938
RsaNI GTAC 2 cut(s) 874, 937
RseI CAYNNNNRTG 1 cut(s) 1047
SacI GAGCTC 1 cut(s) 1117
SaqAI TTAA 3 cut(s) 237, 243, 705
SatI GCNGC 4 cut(s) 216, 693, 1410, 1574
Sau3AI GATC 6 cut(s) 196, 616, 666, 697, 901, 1370
Sau96I GGNCC 2 cut(s) 1445, 1637
ScaI AGTACT 1 cut(s) 938
SchI GAGTC 6 cut(s) 80, 1027, 1133, 1348, 1450, 1712
SduI GDGCHC 1 cut(s) 1117
SfaNI GCATC 3 cut(s) 157, 1010, 1533
SfcI CTRYAG 1 cut(s) 1410
SfuI TTCGAA 2 cut(s) 257, 440
SinI GGWCC 2 cut(s) 1445, 1637
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 3 cut(s) 312, 552, 1116
SmoI CTYRAG 3 cut(s) 312, 552, 1116
SsiI CCGC 8 cut(s) 86, 215, 317, 446, 572, 1136, 1571, 1662
SspMI CTAG 4 cut(s) 200, 459, 558, 1238
SstI GAGCTC 1 cut(s) 1117
StyI CCWWGG 1 cut(s) 1030
TaaI ACNGT 3 cut(s) 493, 866, 1650
TaiI ACGT 4 cut(s) 539, 1099, 1308, 1660
TaqI TCGA 7 cut(s) 257, 297, 440, 750, 1308, 1361, 1454
TatI WGTACW 2 cut(s) 873, 936
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 4 cut(s) 91, 149, 653, 1106
Tru1I TTAA 3 cut(s) 237, 243, 705
Tru9I TTAA 3 cut(s) 237, 243, 705
TscAI CASTG 2 cut(s) 1653, 1713
TseFI GTSAC 1 cut(s) 1704
TseI GCWGC 3 cut(s) 692, 1409, 1573
Tsp45I GTSAC 1 cut(s) 1704
TspDTI ATGAA 9 cut(s) 17, 66, 695, 833, 919, 923, 947, 1149, 1553
TspGWI ACGGA 3 cut(s) 1134, 1615, 1650
TspRI CASTG 2 cut(s) 1653, 1713
Tth111I GACNNNGTC 1 cut(s) 1357
VpaK11BI GGWCC 2 cut(s) 1445, 1637
XapI RAATTY 6 cut(s) 359, 547, 622, 735, 820, 925
XceI RCATGY 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 959
XmnI GAANNNNTTC 2 cut(s) 363, 926
XspI CTAG 4 cut(s) 200, 459, 558, 1238
ZraI GACGTC 1 cut(s) 1658
ZrmI AGTACT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.