Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005410

Physical Location & Seq

Genomic Coordinates Forward (+)

30699631 .. 30701201

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1241300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATTCTCAGCCTACTTCTTCTGATGCATACACACAAAGTGATACAGGTAAGAGTGGCCAACAAGTTGGTTTGGAAAGACAAGGTGTGGTTTCTGAGAAAATGGAGGATGGTGCCAATTCATTGCATGAAATAAACGTTGGTGCTTCTGGGAATGCGTCGAAGAAAACTGGGAGTACAAAGATTAAAACATCAAAGGAGTTGGGGTCTAGTGTCAACCACAGTACTGATCCTGTTCCTGCACGGACTGAGAGTCCACATAAAAGAGAATCAAAGATGGCTGGTCAAGATTCTCGTTATAACAAGCAAGAATTAGGAACTCTATTGATAAGATTATTCAATAGTTGTTTGTTTATGTTTGATTACTTTGATGTGATAGATACACCAATGGATTTTGGAACAATATGCAGTAATCTTGAACAGGGTCGCAAGTATAATAATTCCGAGGATGTTTTCAGAGATGTGGAGTACATTTGGAACAATTGTTATAAGTATAACAGTAAAGGTGACTACATTTTGGATCTTATGAGGCAGGTGAAGAAGAATTTCACCAAGTATTGGACTGCAGCCGGGTTGTGTAATGGACAACCAAGAGGAACTAATGGTGAAAGGCATCATAAAGTGGATTGCTTATGTGCTATCTGTGTTTTAAAAGGCCATAGAAGGGAGCGTGAGGAGAATGATCGAATTGCGAAGAGCCATGGAGCTAGTGATAATAGTCTTGCTCAAGAACTCAAGCAAGAGGAATCTTCACTTGCGGAAAGTCCTGGTGGGAATTCATCTTCGGATATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001047 GO:0001067 GO:0001085 GO:0001091 GO:0001094 GO:0001098 GO:0001099 GO:0001672 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008134 GO:0008150 GO:0010639 GO:0010847 GO:0031445 GO:0031452 GO:0033043 GO:0033044 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045798 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0065007 GO:0070577 GO:0097159 GO:0140030 GO:0140033 GO:1901363 GO:1902275 GO:1905268 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

266

Amino Acids

29.49

Weight (kDa)

6.01

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	121 - 172	4.6e-12	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025
fragaria_vesca	FvH4_5g28621 FvH4_5g28621
malus_domestica	MD08G1241300.v1.1 MD15G1435300.v1.1
prunus_persica	Prupe.1G578900_v2.0.a1
pyrus_communis	pycom08g20910 pycom08g20920 pycom15g38390 pycom15g38400
rosa_chinensis	RchiOBHm_Chr7g0220691
rosa_multiflora	Rmu_ssc0000189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113660 Rroxscaffold_3G00239200 Rroxscaffold_4G00318920 Rroxscaffold_4G00321600
rosa_rugosa	Rorug07G0196200 Rorug07G0196200 Rorug07G0196200
rosa_samantha	Rh7AG337000 Rh7BG327900 Rh7CG355000 Rh7DG333600
rosa_wichuraiana	Rw7G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	300, 489
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	558
AciI	CCGC	1 cut(s)	758
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	2 cut(s)	224, 528
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	544, 775
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	178, 226, 470
AfiI	CCNNNNNNNGG	2 cut(s)	558, 664
AgsI	TTSAA	2 cut(s)	340, 419
AhdI	GACNNNNNGTC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	707
AluI	AGCT	1 cut(s)	707
AlwI	GGATC	2 cut(s)	224, 528
AoxI	GGCC	2 cut(s)	58, 655
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	2 cut(s)	544, 775
Asp700I	GAANNNNTTC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	4 cut(s)	518, 541, 547, 617
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	2 cut(s)	104, 271
BciT130I	CCWGG	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	571
BfaI	CTAG	2 cut(s)	210, 708
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	571, 768
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	571, 768
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	16, 622
BmuI	ACTGGG	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	711, 719
BpuMI	CCSGG	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	444, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	558, 664
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	444, 700
BseGI	GGATG	2 cut(s)	115, 454
BseLI	CCNNNNNNNGG	2 cut(s)	558, 664
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	23, 87, 240
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	60, 657
BshNI	GGYRCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	558, 664
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	60, 657
Bsp143I	GATC	3 cut(s)	229, 520, 682
Bsp19I	CCATGG	1 cut(s)	700
BspACI	CCGC	1 cut(s)	758
BspANI	GGCC	2 cut(s)	60, 657
BspCNI	CTCAG	3 cut(s)	22, 88, 241
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	2 cut(s)	224, 528
BspQI	GCTCTTC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	444, 700
BssMI	GATC	3 cut(s)	229, 520, 682
BssT1I	CCWWGG	1 cut(s)	700
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	224, 500
Bst6I	CTCTTC	1 cut(s)	689
BstDEI	CTNAG	3 cut(s)	9, 96, 249
BstDSI	CCRYGG	1 cut(s)	700
BstF5I	GGATG	2 cut(s)	115, 454
BstKTI	GATC	3 cut(s)	232, 523, 685
BstMBI	GATC	3 cut(s)	229, 520, 682
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	569, 766
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	60, 657
BtgI	CCRYGG	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	115, 454
BveI	ACCTGC	1 cut(s)	523
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	177, 225, 469
CviAII	CATG	2 cut(s)	128, 701
CviJI	RGCY	7 cut(s)	13, 60, 281, 569, 657, 699, 707
CviKI_1	RGCY	7 cut(s)	13, 60, 281, 569, 657, 699, 707
CviQI	GTAC	3 cut(s)	177, 225, 469
DdeI	CTNAG	3 cut(s)	9, 96, 249
DpnI	GATC	3 cut(s)	231, 522, 684
DpnII	GATC	3 cut(s)	229, 520, 682
DraI	TTTAAA	1 cut(s)	651
DraIII	CACNNNGTG	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	689
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	700
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	2 cut(s)	131, 704
FatI	CATG	2 cut(s)	127, 700
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	122, 461
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	210, 708
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	60, 657
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	131, 704
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	5 cut(s)	5, 253, 269, 290, 746
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	4 cut(s)	518, 541, 547, 617
Hpy166II	GTNNAC	2 cut(s)	217, 257
Hpy188I	TCNGA	5 cut(s)	25, 97, 445, 458, 787
Hpy188III	TCNNGA	3 cut(s)	287, 416, 728
Hpy8I	GTNNAC	2 cut(s)	217, 257
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	2 cut(s)	224, 500
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	29, 127, 242, 408, 566
HpyF3I	CTNAG	3 cut(s)	9, 96, 249
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	131, 704
Kzo9I	GATC	3 cut(s)	229, 520, 682
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	2 cut(s)	667, 704
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	2 cut(s)	16, 622
MaeI	CTAG	2 cut(s)	210, 708
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	231, 522, 684
MboI	GATC	3 cut(s)	229, 520, 682
MboII	GAAGA	7 cut(s)	12, 175, 550, 553, 706, 741, 774
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	7 cut(s)	118, 311, 439, 481, 544, 687, 775
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	100, 439, 522, 587, 667, 736
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	2 cut(s)	186, 650
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	2 cut(s)	571, 768
MunI	CAATTG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	768
NciI	CCSGG	1 cut(s)	571
NcoI	CCATGG	1 cut(s)	700
NdeII	GATC	3 cut(s)	229, 520, 682
NlaIII	CATG	2 cut(s)	131, 704
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	5, 269, 290, 746
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PsiI	TTATAA	2 cut(s)	300, 489
Psp1406I	AACGTT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	3 cut(s)	178, 226, 470
RsaNI	GTAC	3 cut(s)	177, 225, 469
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	186, 650
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	3 cut(s)	229, 520, 682
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	571, 768
SetI	ASST	6 cut(s)	52, 88, 141, 508, 537, 709
SfaNI	GCATC	2 cut(s)	16, 622
SfcI	CTRYAG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	726, 734
SmoI	CTYRAG	2 cut(s)	726, 734
Sse9I	AATT	7 cut(s)	118, 311, 439, 481, 544, 687, 775
SsiI	CCGC	1 cut(s)	758
SspMI	CTAG	2 cut(s)	210, 708
StyD4I	CCNGG	2 cut(s)	569, 766
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	2 cut(s)	224, 500
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	161, 685
TasI	AATT	7 cut(s)	118, 311, 439, 481, 544, 687, 775
TatI	WGTACW	3 cut(s)	176, 224, 468
TfiI	GAWTC	4 cut(s)	5, 269, 290, 746
Tru1I	TTAA	2 cut(s)	186, 650
Tru9I	TTAA	2 cut(s)	186, 650
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	111, 144, 768
TspGWI	ACGGA	1 cut(s)	259
Van91I	CCANNNNNTGG	1 cut(s)	558
XapI	RAATTY	2 cut(s)	544, 775
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	2 cut(s)	210, 708
ZrmI	AGTACT	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.