Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005410

Physical Location & Seq

Genomic Coordinates Forward (+)

46373407 .. 46382057

Gene Structure 8651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGAAGAGCTGGAGCGACTTTCCAATTGGAGATGAAGAGGTCGCGGGCCTTGTCGTTGATAGGAGCATTTTTATGCGACGTACCGTCTGGCTGAAAGATGTTAAACTCAAGCGCTGCTTGGGAGGCAACCCAATTCGAAGCAGCTGTGAAGGACTTGTGACTCCCAAAACAAAGGAATCTCAGCTTACTTCTTTCGAGGCATACACACAAAGTGATGCAGATAAGAGTAGTCAACAAATGGGTTTGGAAAGACAAGGTGTGCTGTCCGAGAAAATGGAGGACAGCGCAAATTCATTGTCTAAAATGAAATGCGGCAATGTGTCAAAGAAAGCCGGGAGTATAAAGATTACACCATCCAAGTCACTTGGGTCAAGTATTAGCCATAGTGATCCCGTACCCGCACGGAGTGAGAGTCCACATGAAAAAGAACTACACAGGCCTCATCCGAATCTCGATTCAATAAGCAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001047 GO:0001067 GO:0001085 GO:0001091 GO:0001094 GO:0001098 GO:0001099 GO:0001672 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008134 GO:0008150 GO:0010639 GO:0010847 GO:0031445 GO:0031452 GO:0033043 GO:0033044 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045798 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0065007 GO:0070577 GO:0097159 GO:0140030 GO:0140033 GO:1901363 GO:1902275 GO:1905268 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

158

Amino Acids

17.32

Weight (kDa)

8.99

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025
fragaria_vesca	FvH4_5g28621 FvH4_5g28621
malus_domestica	MD08G1241300.v1.1 MD15G1435300.v1.1
prunus_persica	Prupe.1G578900_v2.0.a1
pyrus_communis	pycom08g20910 pycom08g20920 pycom15g38390 pycom15g38400
rosa_chinensis	RchiOBHm_Chr7g0220691
rosa_multiflora	Rmu_ssc0000189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113660 Rroxscaffold_3G00239200 Rroxscaffold_4G00318920 Rroxscaffold_4G00321600
rosa_rugosa	Rorug07G0196200 Rorug07G0196200 Rorug07G0196200
rosa_samantha	Rh7AG337000 Rh7BG327900 Rh7CG355000 Rh7DG333600
rosa_wichuraiana	Rw7G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	47, 315, 402
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	292
AdeI	CACNNNGTG	2 cut(s)	215, 410
AfaI	GTAC	2 cut(s)	85, 399
AfeI	AGCGCT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	462
AhdI	GACNNNNNGTC	1 cut(s)	86
AluBI	AGCT	3 cut(s)	12, 147, 187
AluI	AGCT	3 cut(s)	12, 147, 187
AlwI	GGATC	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	2 cut(s)	49, 440
ApeKI	GCWGC	2 cut(s)	117, 144
ApoI	RAATTY	1 cut(s)	292
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspLEI	GCGC	2 cut(s)	117, 290
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	104, 156
BccI	CCATC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	3 cut(s)	118, 145, 316
BlsI	GCNGC	3 cut(s)	119, 146, 317
Bme1390I	CCNGG	1 cut(s)	337
BmeRI	GACNNNNNGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bse3DI	GCAATG	1 cut(s)	325
BseGI	GGATG	2 cut(s)	356, 445
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	104, 156
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	51, 442
BsiSI	CCGG	1 cut(s)	336
BsnI	GGCC	2 cut(s)	51, 442
Bsp119I	TTCGAA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	3 cut(s)	47, 315, 402
BspANI	GGCC	2 cut(s)	51, 442
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	325
BssMI	GATC	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	2, 33
BstBI	TTCGAA	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	356, 445
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 290
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	335
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	104, 156
BsuRI	GGCC	2 cut(s)	51, 442
BtsCI	GGATG	2 cut(s)	356, 445
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	2 cut(s)	117, 290
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	84, 398
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	8 cut(s)	12, 51, 94, 147, 187, 335, 384, 442
CviKI_1	RGCY	8 cut(s)	12, 51, 94, 147, 187, 335, 384, 442
CviQI	GTAC	2 cut(s)	84, 398
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	2 cut(s)	215, 410
DriI	GACNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	2, 33
Eam1105I	GACNNNNNGTC	1 cut(s)	86
EarI	CTCTTC	2 cut(s)	2, 33
Eco147I	AGGCCT	1 cut(s)	442
Eco47III	AGCGCT	1 cut(s)	116
FaeI	CATG	1 cut(s)	425
FaiI	YATR	5 cut(s)	77, 205, 344, 387, 423
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	1 cut(s)	421
FauI	CCCGC	2 cut(s)	40, 409
Fnu4HI	GCNGC	3 cut(s)	118, 145, 316
FokI	GGATG	2 cut(s)	343, 432
Fsp4HI	GCNGC	3 cut(s)	118, 145, 316
GlaI	GCGC	2 cut(s)	116, 289
GluI	GCNGC	3 cut(s)	118, 145, 316
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	51, 442
HapII	CCGG	1 cut(s)	336
HhaI	GCGC	2 cut(s)	117, 290
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	2 cut(s)	115, 288
HinP1I	GCGC	2 cut(s)	115, 288
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	5 cut(s)	163, 179, 415, 451, 458
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	236, 419
Hpy188I	TCNGA	2 cut(s)	271, 450
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	2 cut(s)	236, 419
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	2 cut(s)	115, 288
Kzo9I	GATC	1 cut(s)	391
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	15, 66
LpnPI	CCDG	3 cut(s)	76, 349, 424
Lsp1109I	GCAGC	2 cut(s)	104, 156
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	160, 363
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	2 cut(s)	19, 50
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	3 cut(s)	27, 135, 292
MlyI	GAGTC	2 cut(s)	157, 424
MnlI	CCTC	5 cut(s)	34, 119, 193, 274, 453
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	160, 363
NspV	TTCGAA	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	3 cut(s)	179, 451, 458
PkrI	GCNGC	3 cut(s)	119, 146, 317
PleI	GAGTC	2 cut(s)	157, 423
PpsI	GAGTC	2 cut(s)	157, 423
PspPI	GGNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	2 cut(s)	85, 399
RsaNI	GTAC	2 cut(s)	84, 398
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	118, 145, 316
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	157, 424
ScrFI	CCNGG	1 cut(s)	337
SetI	ASST	6 cut(s)	14, 45, 85, 149, 189, 262
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	27, 135, 292
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	3 cut(s)	47, 315, 402
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	4 cut(s)	5, 139, 198, 456
TasI	AATT	3 cut(s)	27, 135, 292
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	179, 451, 458
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	160, 363
TseI	GCWGC	2 cut(s)	117, 144
Tsp45I	GTSAC	2 cut(s)	160, 363
TspDTI	ATGAA	4 cut(s)	51, 285, 323, 438
TspGWI	ACGGA	1 cut(s)	421
XapI	RAATTY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.