Rh7DG333600

bromo domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
41034494 .. 41040936
6443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG333600.1

Sequence Viewer

Length: 1665 bp
ATGAAGCGGAAGCGTGGGCACAAGAACAAGAAAGGAAAGCCTAAAGGTCCTTCTGTGCCGGTTGTTGTAAATTTGGAGGAGAACGAAAATTTGGATGAGTCTGGCGGCGGCGGTGGCGGTGGCGATAACGATGATAATATAGATGATTCTGGAATGGAGGTTGATACCCCTTCGTCAACCGGGACGGATCAGCAGCAGCAACAACAGCACCAGCATTACAATGTTGCCAATATTAATCCCGATGGTTCGATTGGTAGGGGGGGTGGGAAATCAGTGGGGAGAGTTAAAGTGAAGCTTGTGACTCCCAAAACAAAGGAATCTCAGCTCACTTCTTCTGAGGCATACACACAAAGTGATACAGATAAGAGTAGTCAACAAATGGGTTTGGAAAGACAAGGTGTGCTGTCTGAGAAAATGGAGGATAGTGCAAATTCATTGTCTAAAATGAAATCTGGCAATGTGTCAAAGAAAGCTGGGAGTATAAAGATTAAACCATCCAAGTCACTGGGGTCAAGTATTAGCCATAGTGATCCTGTACCCGCACGGAGTGAGAGTCCACATGAAAAAGAACTGCACAGGCCTCATCTGGAATCTCGATACAATAAGCAAGAGTTAGATACTTCACTCACGGTTATAAAGAAGGTAATGAAAATGGATGCTGCCGAACCTTTTAATGTCCCTGTCAATCCTGAAGCTTTAGGAATACCTGATTATTTTGACGTGATAGATACACCAATGGACTTTGGAACAATTTGCAGCAACCTTGAACTGGGTATTAAATATAGAAATTCTGAGGACGTATACAAAGATGTTCAGTATATTTGGGACAACTGTTATAAGTATAACAATAAGGGCGACTACATTTTGGATCTTATGAGGCGGGTGAAGAAGAATTTTGCAAAGTATTGGACAGCAGCTGGGTTATATAGTGGACAGTCGATGGGAACTAGTGGTGTTGAAAGCAGTCAAGAGAATATCTCACCATCTGATCAAGGGAAAGTACATATGAAAGGTGGCCAAATAAAACAGAAGACACGAAAGGGTCATGGAAGGCGTCACAAATCCGACTGCTTATGTGCTATTTGTGTTCTAAAACGCCGTAGAAGGGAGCGTGAGGAGAATGCTCATATTGTTAAAAGCCCACTTGGAGCTAGTGATAATAATCTTTCCCAGGAGTTCAGGCAAGAGGAATCTTCACATGCGGAGAGTCCTTCTGGTGAAAATTCATCTTCGGATATGGATGGATCATTGGACCCGAATGCAGATGCTACGGTGGAAGAAACAGAAGAGGTGAAAATGGGGGTATCCAAGCAGCAGTTTGATTGCCCATCAAGGGAGAAGCAGGAGGAGGAGGAGGATGACGATGAAGAGGATGAGGAGGAAGAGAGTGAGATGGAGATGAAAGATGAAGGTAATGGTGAGGGACTACAGCAGCTTGACAAATCAAGAGAGGAGCCTAATGAACAATTGCAACCAATGATAACTGAAAAGCTTGATGCTGGGATGCAAACTGATACAAAAATGAATACTTTGGCGCAGCATGAAGGAGCAATTGAAGCAGATAATAAAGAGAAGGTACACTATTTTCTCTGTTTTGGAATCAACAATTTATTTAGCTATAGTAATGTCATATGTTGTGTCATCATATCAGGAAAAAAAAAATGA

Protein Analysis

554

Amino Acids

61.52

Weight (kDa)

5.28

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 210 - 288 7.1e-17 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 635, 837
AccI GTMKAC 1 cut(s) 801
AciI CCGC 8 cut(s) 7, 105, 108, 111, 117, 540, 880, 1202
AclWI GGATC 4 cut(s) 195, 524, 876, 1252
AcoI YGGCCR 1 cut(s) 1015
AcsI RAATTY 6 cut(s) 70, 88, 430, 787, 892, 1222
AcuI CTGAAG 1 cut(s) 711
AcyI GRCGYC 1 cut(s) 1054
AdeI CACNNNGTG 2 cut(s) 353, 548
AfaI GTAC 3 cut(s) 537, 1002, 1578
AfiI CCNNNNNNNGG 3 cut(s) 769, 1105, 1333
AgsI TTSAA 3 cut(s) 767, 959, 1556
AhlI ACTAGT 1 cut(s) 947
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 1170
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 9 cut(s) 295, 325, 473, 695, 917, 1151, 1435, 1492, 1617
AluI AGCT 9 cut(s) 295, 325, 473, 695, 917, 1151, 1435, 1492, 1617
AlwI GGATC 4 cut(s) 195, 524, 876, 1252
AlwNI CAGNNNCTG 1 cut(s) 917
AoxI GGCC 2 cut(s) 578, 1015
ApeKI GCWGC 8 cut(s) 193, 196, 659, 756, 914, 1312, 1432, 1537
ApoI RAATTY 6 cut(s) 70, 88, 430, 787, 892, 1222
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AseI ATTAAT 1 cut(s) 234
AspLEI GCGC 1 cut(s) 1537
AspS9I GGNCC 2 cut(s) 47, 1252
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 5 cut(s) 895, 972, 1229, 1303, 1430
AvaII GGWCC 2 cut(s) 47, 1252
BaeGI GKGCMC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 1017
BbsI GAAGAC 1 cut(s) 1037
BbvI GCAGC 8 cut(s) 205, 208, 646, 768, 926, 1324, 1444, 1549
BccI CCATC 7 cut(s) 236, 502, 934, 991, 1235, 1336, 1387
BceAI ACGGC 1 cut(s) 1083
BciT130I CCWGG 1 cut(s) 1172
BciVI GTATCC 1 cut(s) 1315
BclI TGATCA 1 cut(s) 988
BcnI CCSGG 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 947
BfaI CTAG 2 cut(s) 948, 1152
BfmI CTRYAG 2 cut(s) 1427, 1618
BfuI GTATCC 1 cut(s) 1315
Bme1390I CCNGG 2 cut(s) 181, 1172
Bme18I GGWCC 2 cut(s) 47, 1252
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 47, 1252
BmiI GGNNCC 2 cut(s) 1254, 1455
BmrFI CCNGG 2 cut(s) 181, 1172
BmrI ACTGGG 2 cut(s) 515, 779
BmsI GCATC 4 cut(s) 646, 1255, 1486, 1494
BmuI ACTGGG 2 cut(s) 515, 779
BpiI GAAGAC 1 cut(s) 1037
BplI GAGNNNNNCTC 2 cut(s) 962, 994
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 1161
BsaHI GRCGYC 1 cut(s) 1054
BsaJI CCNNGG 1 cut(s) 1170
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 769, 1105, 1333
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 2 cut(s) 510, 774
Bse3DI GCAATG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 1161
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 1 cut(s) 1170
BseGI GGATG 7 cut(s) 100, 494, 661, 1246, 1363, 1378, 1509
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 3 cut(s) 769, 1105, 1333
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 4 cut(s) 327, 335, 399, 783
BseNI ACTGG 2 cut(s) 510, 774
BseRI GAGGAG 7 cut(s) 92, 1130, 1361, 1364, 1367, 1391, 1466
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 8 cut(s) 205, 208, 646, 768, 926, 1324, 1444, 1549
BseYI CCCAGC 3 cut(s) 473, 917, 1499
BsgI GTGCAG 1 cut(s) 557
BshFI GGCC 2 cut(s) 580, 1017
BsiSI CCGG 2 cut(s) 59, 180
BslFI GGGAC 4 cut(s) 196, 662, 839, 1437
BslI CCNNNNNNNGG 3 cut(s) 769, 1105, 1333
BsmFI GGGAC 4 cut(s) 196, 662, 839, 1437
BsmI GAATGC 2 cut(s) 1126, 1264
BsnI GGCC 2 cut(s) 580, 1017
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 5 cut(s) 187, 529, 868, 988, 1244
BspACI CCGC 8 cut(s) 7, 105, 108, 111, 117, 540, 880, 1202
BspANI GGCC 2 cut(s) 580, 1017
BspCNI CTCAG 4 cut(s) 328, 334, 400, 784
BspLI GGNNCC 2 cut(s) 1254, 1455
BspPI GGATC 4 cut(s) 195, 524, 876, 1252
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 2 cut(s) 510, 774
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 1170
BssMI GATC 5 cut(s) 187, 529, 868, 988, 1244
BssNAI GTATAC 1 cut(s) 802
BssNI GRCGYC 1 cut(s) 1054
Bst1107I GTATAC 1 cut(s) 802
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 4 cut(s) 631, 833, 936, 1273
Bst6I CTCTTC 3 cut(s) 1281, 1362, 1377
BstACI GRCGYC 1 cut(s) 1054
BstDEI CTNAG 4 cut(s) 321, 336, 408, 792
BstF5I GGATG 7 cut(s) 100, 494, 661, 1246, 1363, 1378, 1509
BstHHI GCGC 1 cut(s) 1537
BstKTI GATC 5 cut(s) 190, 532, 871, 991, 1247
BstMBI GATC 5 cut(s) 187, 529, 868, 988, 1244
BstMWI GCNNNNNNNGC 3 cut(s) 114, 205, 1556
BstNI CCWGG 1 cut(s) 1172
BstNSI RCATGY 1 cut(s) 1202
BstSCI CCNGG 2 cut(s) 179, 1170
BstSFI CTRYAG 2 cut(s) 1427, 1618
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 8 cut(s) 205, 208, 646, 768, 926, 1324, 1444, 1549
BstV2I GAAGAC 1 cut(s) 1037
BstX2I RGATCY 1 cut(s) 868
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 1 cut(s) 868
BstZ17I GTATAC 1 cut(s) 802
BsuI GTATCC 1 cut(s) 1315
BsuRI GGCC 2 cut(s) 580, 1017
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 7 cut(s) 100, 494, 661, 1246, 1363, 1378, 1509
BtsIMutI CAGTG 2 cut(s) 279, 503
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 1 cut(s) 1537
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 47, 1252
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 3 cut(s) 536, 1001, 1577
CviAII CATG 4 cut(s) 560, 1046, 1199, 1541
CviQI GTAC 3 cut(s) 536, 1001, 1577
DdeI CTNAG 4 cut(s) 321, 336, 408, 792
DpnI GATC 5 cut(s) 189, 531, 870, 990, 1246
DpnII GATC 5 cut(s) 187, 529, 868, 988, 1244
DraIII CACNNNGTG 2 cut(s) 353, 548
EaeI YGGCCR 1 cut(s) 1015
Eam1104I CTCTTC 3 cut(s) 1281, 1362, 1377
EarI CTCTTC 3 cut(s) 1281, 1362, 1377
Eco147I AGGCCT 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 47, 1252
Eco57I CTGAAG 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 1170
FaeI CATG 4 cut(s) 563, 1049, 1202, 1544
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 4 cut(s) 196, 662, 839, 1437
FatI CATG 4 cut(s) 559, 1045, 1198, 1540
FauI CCCGC 2 cut(s) 547, 873
FauNDI CATATG 2 cut(s) 1005, 1631
FbaI TGATCA 1 cut(s) 988
FblI GTMKAC 1 cut(s) 801
FokI GGATG 7 cut(s) 107, 481, 668, 1253, 1370, 1385, 1516
FspBI CTAG 2 cut(s) 948, 1152
GlaI GCGC 1 cut(s) 1536
GsaI CCCAGC 3 cut(s) 477, 921, 1503
HaeIII GGCC 2 cut(s) 580, 1017
HapII CCGG 2 cut(s) 59, 180
HgaI GACGC 1 cut(s) 1043
HhaI GCGC 1 cut(s) 1537
Hin1I GRCGYC 1 cut(s) 1054
Hin1II CATG 4 cut(s) 563, 1049, 1202, 1544
Hin6I GCGC 1 cut(s) 1535
HinP1I GCGC 1 cut(s) 1535
HincII GTYRAC 2 cut(s) 177, 374
HindII GTYRAC 2 cut(s) 177, 374
HindIII AAGCTT 3 cut(s) 293, 693, 1490
HinfI GANTC 9 cut(s) 98, 146, 301, 317, 553, 590, 1190, 1207, 1599
HpaII CCGG 2 cut(s) 59, 180
HphI GGTGA 5 cut(s) 895, 972, 1229, 1303, 1430
Hpy166II GTNNAC 6 cut(s) 177, 374, 557, 802, 932, 1579
Hpy188I TCNGA 6 cut(s) 337, 409, 793, 988, 1066, 1234
Hpy188III TCNNGA 8 cut(s) 150, 239, 587, 594, 689, 968, 1446, 1650
Hpy8I GTNNAC 6 cut(s) 177, 374, 557, 802, 932, 1579
HpyAV CCTTC 9 cut(s) 60, 180, 634, 1044, 1098, 1221, 1403, 1538, 1567
HpyCH4III ACNGT 4 cut(s) 631, 833, 936, 1273
HpyCH4IV ACGT 2 cut(s) 720, 798
HpyCH4V TGCA 7 cut(s) 428, 574, 756, 899, 1262, 1471, 1507
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 205, 1556
HpyF3I CTNAG 4 cut(s) 321, 336, 408, 792
HpySE526I ACGT 2 cut(s) 720, 798
Hsp92I GRCGYC 1 cut(s) 1054
Hsp92II CATG 4 cut(s) 563, 1049, 1202, 1544
HspAI GCGC 1 cut(s) 1535
Ksp22I TGATCA 1 cut(s) 988
Kzo9I GATC 5 cut(s) 187, 529, 868, 988, 1244
LmnI GCTCC 4 cut(s) 1108, 1148, 1453, 1547
Lsp1109I GCAGC 8 cut(s) 205, 208, 646, 768, 926, 1324, 1444, 1549
LweI GCATC 4 cut(s) 646, 1255, 1486, 1494
MaeI CTAG 2 cut(s) 948, 1152
MaeII ACGT 2 cut(s) 720, 798
MaeIII GTNAC 3 cut(s) 298, 501, 1055
MalI GATC 5 cut(s) 189, 531, 870, 990, 1246
MboI GATC 5 cut(s) 187, 529, 868, 988, 1244
MfeI CAATTG 2 cut(s) 1466, 1551
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 1017
MluNI TGGCCA 1 cut(s) 1017
MlyI GAGTC 4 cut(s) 107, 295, 562, 1216
MmeI TCCRAC 1 cut(s) 1089
Mox20I TGGCCA 1 cut(s) 1017
MscI TGGCCA 1 cut(s) 1017
MseI TTAA 6 cut(s) 234, 285, 489, 672, 777, 1134
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 1017
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 2 cut(s) 59, 180
MspR9I CCNGG 2 cut(s) 181, 1172
MunI CAATTG 2 cut(s) 1466, 1551
Mva1269I GAATGC 2 cut(s) 1126, 1264
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 3 cut(s) 114, 205, 1556
NciI CCSGG 1 cut(s) 181
NdeI CATATG 2 cut(s) 1005, 1631
NdeII GATC 5 cut(s) 187, 529, 868, 988, 1244
NlaIII CATG 4 cut(s) 563, 1049, 1202, 1544
NlaIV GGNNCC 2 cut(s) 1254, 1455
NmuCI GTSAC 3 cut(s) 298, 501, 1055
NspI RCATGY 1 cut(s) 1202
PceI AGGCCT 1 cut(s) 580
PctI GAATGC 2 cut(s) 1126, 1264
PfeI GAWTC 5 cut(s) 146, 317, 590, 1190, 1599
PleI GAGTC 4 cut(s) 106, 295, 561, 1215
PpsI GAGTC 4 cut(s) 106, 295, 561, 1215
PpuMI RGGWCCY 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 234
PsiI TTATAA 2 cut(s) 635, 837
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 1170
PspFI CCCAGC 3 cut(s) 473, 917, 1499
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 2 cut(s) 1254, 1455
PspPI GGNCC 2 cut(s) 47, 1252
PspPPI RGGWCCY 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 868
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 537, 1002, 1578
RsaNI GTAC 3 cut(s) 536, 1001, 1577
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 6 cut(s) 234, 285, 489, 672, 777, 1134
Sau3AI GATC 5 cut(s) 187, 529, 868, 988, 1244
Sau96I GGNCC 2 cut(s) 47, 1252
SchI GAGTC 4 cut(s) 107, 295, 562, 1216
ScrFI CCNGG 2 cut(s) 181, 1172
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 4 cut(s) 646, 1255, 1486, 1494
SfcI CTRYAG 2 cut(s) 1427, 1618
SinI GGWCC 2 cut(s) 47, 1252
SmiMI CAYNNNNRTG 1 cut(s) 219
SpeI ACTAGT 1 cut(s) 947
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 8 cut(s) 7, 105, 108, 111, 117, 540, 880, 1202
SspI AATATT 1 cut(s) 232
SspMI CTAG 2 cut(s) 948, 1152
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 2 cut(s) 179, 1170
TaaI ACNGT 4 cut(s) 631, 833, 936, 1273
TaiI ACGT 2 cut(s) 723, 801
TaqI TCGA 3 cut(s) 248, 595, 938
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 2 cut(s) 108, 111
TfiI GAWTC 5 cut(s) 146, 317, 590, 1190, 1599
Tru1I TTAA 6 cut(s) 234, 285, 489, 672, 777, 1134
Tru9I TTAA 6 cut(s) 234, 285, 489, 672, 777, 1134
TscAI CASTG 2 cut(s) 279, 510
TseFI GTSAC 3 cut(s) 298, 501, 1055
TseI GCWGC 8 cut(s) 193, 196, 659, 756, 914, 1312, 1432, 1537
Tsp45I GTSAC 3 cut(s) 298, 501, 1055
TspGWI ACGGA 2 cut(s) 200, 559
TspRI CASTG 2 cut(s) 279, 510
VpaK11BI GGWCC 2 cut(s) 47, 1252
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 6 cut(s) 70, 88, 430, 787, 892, 1222
XceI RCATGY 1 cut(s) 1202
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 2 cut(s) 948, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.