Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005410

Physical Location & Seq

Genomic Coordinates Forward (+)

20520218 .. 20521164

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGCGGAAGCGAAAGAACAAGAAAGGAAAGCCCAAAGGGTCTGTAGCAGGAGGAAATGAGGCAATTTCAAGTGGGGCAATTGTAAATTTGGAGGATGGTACAAGTATGGATGAAGATGGTAATTACTATAATAAGTATGAGTCTGGAATGCTTAGGACTTCGAGAACAATGGATTCTCAGCCTACTTCTGATGCATACACAGAAAGTGATACAGATAAGAGTGGCCAACAAGTTGGTTTGGAAAGACAAGGTGTGGTTTCTGAGAAAATGGAGGATAGTGCCAATTCATTGCATGAAGTAAACGTTGGTGCTTCTGGGAACGCGTCGAAGAAAACTGGGAGTGTAAAGATTAAAACATCAAAGCAGTTGGGGTCTAGTGTCAACCACAGTACTGATCCTGTTCCTGCACGGACTGAGAGTCCACATAAAAGAGAATCGAAGGAGGCTGGTCAAGATTCTCGTTATAACAAGCAAGAATTAGATACTGCACCGATGTGTGCTTATATTTGTCTTCACTTATCACTTACACAGATAGTAAAGAAGGTGATGAAAATGGATTCTTCTGAACCCTTTAATGTCCCTATGAATCCTGAAGCTTTGGGAGTACCTGATAAGAAAGAATTTAATTTGAATTTGACAATGGGAGAGCACGACGTAAAGCACATGGGACCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001047 GO:0001067 GO:0001085 GO:0001091 GO:0001094 GO:0001098 GO:0001099 GO:0001672 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008134 GO:0008150 GO:0010639 GO:0010847 GO:0031445 GO:0031452 GO:0033043 GO:0033044 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045798 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0065007 GO:0070577 GO:0097159 GO:0140030 GO:0140033 GO:1901363 GO:1902275 GO:1905268 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

227

Amino Acids

24.6

Weight (kDa)

7.74

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025
fragaria_vesca	FvH4_5g28621 FvH4_5g28621
malus_domestica	MD08G1241300.v1.1 MD15G1435300.v1.1
prunus_persica	Prupe.1G578900_v2.0.a1
pyrus_communis	pycom08g20910 pycom08g20920 pycom15g38390 pycom15g38400
rosa_chinensis	RchiOBHm_Chr7g0220691
rosa_multiflora	Rmu_ssc0000189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113660 Rroxscaffold_3G00239200 Rroxscaffold_4G00318920 Rroxscaffold_4G00321600
rosa_rugosa	Rorug07G0196200 Rorug07G0196200 Rorug07G0196200
rosa_samantha	Rh7AG337000 Rh7BG327900 Rh7CG355000 Rh7DG333600
rosa_wichuraiana	Rw7G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	7
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	88, 623, 634
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	3 cut(s)	103, 394, 609
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	72, 634
AhdI	GACNNNNNGTC	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AleI	CACNNNNGTG	1 cut(s)	496
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw21I	GWGCWC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	1 cut(s)	226
ApoI	RAATTY	3 cut(s)	88, 623, 634
AspS9I	GGNCC	1 cut(s)	671
AsuHPI	GGTGA	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	654
BccI	CCATC	2 cut(s)	92, 113
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	45
BmcAI	AGTACT	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	671
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	672
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	103, 118
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	194, 255, 408
BseNI	ACTGG	1 cut(s)	343
BsgI	GTGCAG	2 cut(s)	393, 474
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	3 cut(s)	193, 256, 409
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	672
BspPI	GGATC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	155, 180, 264, 417
BstF5I	GGATG	2 cut(s)	103, 118
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	103, 118
Cfr13I	GGNCC	1 cut(s)	671
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	102, 393, 608
CviAII	CATG	2 cut(s)	296, 667
CviJI	RGCY	5 cut(s)	34, 184, 228, 449, 599
CviKI_1	RGCY	5 cut(s)	34, 184, 228, 449, 599
CviQI	GTAC	3 cut(s)	102, 393, 608
DdeI	CTNAG	4 cut(s)	155, 180, 264, 417
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DriI	GACNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	2 cut(s)	299, 670
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	295, 666
FokI	GGATG	2 cut(s)	110, 125
FspBI	CTAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	228
HgaI	GACGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	299, 670
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	7 cut(s)	143, 176, 421, 437, 458, 560, 589
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	304, 385, 425
Hpy188I	TCNGA	3 cut(s)	193, 265, 568
Hpy188III	TCNNGA	4 cut(s)	147, 165, 455, 593
Hpy8I	GTNNAC	3 cut(s)	304, 385, 425
Hpy99I	CGWCG	2 cut(s)	331, 659
HpyAV	CCTTC	2 cut(s)	436, 538
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	306, 657
HpyCH4V	TGCA	4 cut(s)	197, 295, 410, 491
HpyF3I	CTNAG	4 cut(s)	155, 180, 264, 417
HpySE526I	ACGT	2 cut(s)	306, 657
Hsp92II	CATG	2 cut(s)	299, 670
Kzo9I	GATC	1 cut(s)	397
LpnPI	CCDG	9 cut(s)	36, 132, 303, 324, 414, 420, 435, 606, 624
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	306, 657
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	4 cut(s)	128, 343, 506, 555
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	654
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	9 cut(s)	66, 81, 88, 124, 286, 479, 623, 628, 634
MluI	ACGCGT	1 cut(s)	324
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	152, 430
MnlI	CCTC	5 cut(s)	47, 55, 88, 268, 439
Mox20I	TGGCCA	1 cut(s)	228
Mph1103I	ATGCAT	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	4 cut(s)	354, 576, 627, 679
MslI	CAYNNNNRTG	1 cut(s)	496
Msp20I	TGGCCA	1 cut(s)	228
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	156
MvnI	CGCG	1 cut(s)	326
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	299, 670
NlaIV	GGNNCC	1 cut(s)	672
NsiI	ATGCAT	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	496
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	5 cut(s)	176, 437, 458, 560, 589
PleI	GAGTC	2 cut(s)	151, 429
PpsI	GAGTC	2 cut(s)	151, 429
PsiI	TTATAA	1 cut(s)	468
Psp1406I	AACGTT	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	671
RsaI	GTAC	3 cut(s)	103, 394, 609
RsaNI	GTAC	3 cut(s)	102, 393, 608
RseI	CAYNNNNRTG	1 cut(s)	496
SaqAI	TTAA	4 cut(s)	354, 576, 627, 679
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	671
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	2 cut(s)	152, 430
SduI	GDGCHC	1 cut(s)	654
SetI	ASST	6 cut(s)	256, 309, 549, 601, 613, 660
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	496
Sse9I	AATT	9 cut(s)	66, 81, 88, 124, 286, 479, 623, 628, 634
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	2 cut(s)	309, 660
TaqI	TCGA	3 cut(s)	164, 329, 440
TasI	AATT	9 cut(s)	66, 81, 88, 124, 286, 479, 623, 628, 634
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	5 cut(s)	176, 437, 458, 560, 589
Tru1I	TTAA	4 cut(s)	354, 576, 627, 679
Tru9I	TTAA	4 cut(s)	354, 576, 627, 679
TspDTI	ATGAA	6 cut(s)	17, 129, 279, 312, 566, 602
TspGWI	ACGGA	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	3 cut(s)	88, 623, 634
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.