Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005410

Physical Location & Seq

Genomic Coordinates Forward (+)

38186622 .. 38187173

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGCGGAAGCGAAAGAACAAGAAAGGAAAGCCCAAAGGGTCTGTGGGGGGAGGAAATGAGGCGGTTTCAAGTGGGGCTATTGTAGATTTGGAGGATGGTACAAATATGGATGAAGACGGTAATTACGAGAATAAGTATGAGTCTGGAATGGAAGTTGATACCCCTTCGTCGACTGGGACTGATCAGCATATCAATCTTGCCAATATTAATCCTGACGGTTCAATTGATAGGGGGGTTGGGAAATCAGTGGGAAGAGTTAAAGTGAAGCTTAAGACTTCGAGAACAATGGATTCTCAGCCTACATCATCAGATGCATACACTCAAAGTGATACAGATAGAAGTGGCCAACAAGTTGGTTTGGAAAGACAAGGTCTGGTTTCTGAGAAAATGGAGGATAGTGCCAATTCATTGCATGAAGTAAACGTTGGTGCTTCTGTGAACACGTCGAAGAAAACTGGGGGTATAAAGATTAAGTCATCAAAGGTGTTGGGGTCTAGTGTCAACCACAGTACTGATCGATCCAAACCGATCTGTTCCTGCACCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001047 GO:0001067 GO:0001085 GO:0001091 GO:0001094 GO:0001098 GO:0001099 GO:0001672 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008134 GO:0008150 GO:0010639 GO:0010847 GO:0031445 GO:0031452 GO:0033043 GO:0033044 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045798 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0065007 GO:0070577 GO:0097159 GO:0140030 GO:0140033 GO:1901363 GO:1902275 GO:1905268 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

184

Amino Acids

19.38

Weight (kDa)

8.45

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025
fragaria_vesca	FvH4_5g28621 FvH4_5g28621
malus_domestica	MD08G1241300.v1.1 MD15G1435300.v1.1
prunus_persica	Prupe.1G578900_v2.0.a1
pyrus_communis	pycom08g20910 pycom08g20920 pycom15g38390 pycom15g38400
rosa_chinensis	RchiOBHm_Chr7g0220691
rosa_multiflora	Rmu_ssc0000189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113660 Rroxscaffold_3G00239200 Rroxscaffold_4G00318920 Rroxscaffold_4G00321600
rosa_rugosa	Rorug07G0196200 Rorug07G0196200 Rorug07G0196200
rosa_samantha	Rh7AG337000 Rh7BG327900 Rh7CG355000 Rh7DG333600
rosa_wichuraiana	Rw7G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	2 cut(s)	7, 65
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	1 cut(s)	516
AcoI	YGGCCR	1 cut(s)	346
AfaI	GTAC	2 cut(s)	103, 514
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	72, 225
AjiI	CACGTC	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	123
BccI	CCATC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	498
BfrI	CTTAAG	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	447
BmrI	ACTGGG	2 cut(s)	186, 468
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	2 cut(s)	186, 468
BpiI	GAAGAC	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	520
Bse1I	ACTGG	2 cut(s)	181, 463
Bse3DI	GCAATG	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	520
BseGI	GGATG	2 cut(s)	103, 118
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	311, 375
BseNI	ACTGG	2 cut(s)	181, 463
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	348
BshVI	ATCGAT	1 cut(s)	520
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	184, 517, 521, 531
BspACI	CCGC	2 cut(s)	7, 65
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	310, 376
BspDI	ATCGAT	1 cut(s)	520
BspPI	GGATC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	181, 463
BssMI	GATC	4 cut(s)	184, 517, 521, 531
Bst4CI	ACNGT	3 cut(s)	122, 221, 512
Bst6I	CTCTTC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	297, 384
BstF5I	GGATG	2 cut(s)	103, 118
BstKTI	GATC	4 cut(s)	187, 520, 524, 534
BstMBI	GATC	4 cut(s)	184, 517, 521, 531
BstV2I	GAAGAC	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	520
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	103, 118
BtsIMutI	CAGTG	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	102, 513
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	5 cut(s)	34, 80, 271, 301, 348
CviKI_1	RGCY	5 cut(s)	34, 80, 271, 301, 348
CviQI	GTAC	2 cut(s)	102, 513
DdeI	CTNAG	2 cut(s)	297, 384
DpnI	GATC	4 cut(s)	186, 519, 523, 533
DpnII	GATC	4 cut(s)	184, 517, 521, 531
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	319
FaeI	CATG	1 cut(s)	419
FaiI	YATR	6 cut(s)	110, 141, 192, 319, 417, 467
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	173
FokI	GGATG	2 cut(s)	110, 125
FspBI	CTAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	419
HincII	GTYRAC	2 cut(s)	174, 505
HindII	GTYRAC	2 cut(s)	174, 505
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	143, 293
Hpy166II	GTNNAC	4 cut(s)	174, 424, 442, 505
Hpy188I	TCNGA	2 cut(s)	313, 385
Hpy188III	TCNNGA	3 cut(s)	147, 215, 282
Hpy8I	GTNNAC	4 cut(s)	174, 424, 442, 505
Hpy99I	CGWCG	2 cut(s)	175, 451
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	3 cut(s)	122, 221, 512
HpyCH4IV	ACGT	2 cut(s)	426, 446
HpyCH4V	TGCA	3 cut(s)	317, 415, 543
HpyF3I	CTNAG	2 cut(s)	297, 384
HpySE526I	ACGT	2 cut(s)	426, 446
Hsp92II	CATG	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 517, 521, 531
LpnPI	CCDG	5 cut(s)	132, 162, 228, 362, 444
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	426, 446
MalI	GATC	4 cut(s)	186, 519, 523, 533
MboI	GATC	4 cut(s)	184, 517, 521, 531
MboII	GAAGA	3 cut(s)	128, 267, 463
MfeI	CAATTG	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	3 cut(s)	124, 225, 406
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	47, 55, 88, 388
Mox20I	TGGCCA	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	4 cut(s)	210, 261, 273, 474
Msp20I	TGGCCA	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	225
NdeII	GATC	4 cut(s)	184, 517, 521, 531
NlaIII	CATG	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	426
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	2 cut(s)	103, 514
RsaNI	GTAC	2 cut(s)	102, 513
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	210, 261, 273, 474
Sau3AI	GATC	4 cut(s)	184, 517, 521, 531
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	1 cut(s)	152
SetI	ASST	5 cut(s)	273, 376, 429, 449, 489
SfaNI	GCATC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	124, 225, 406
SsiI	CCGC	2 cut(s)	7, 65
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	122, 221, 512
TaiI	ACGT	2 cut(s)	429, 449
TaqI	TCGA	4 cut(s)	173, 281, 449, 520
TasI	AATT	3 cut(s)	124, 225, 406
TatI	WGTACW	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	4 cut(s)	210, 261, 273, 474
Tru9I	TTAA	4 cut(s)	210, 261, 273, 474
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	17, 129, 399, 432
TspRI	CASTG	1 cut(s)	255
Tth111I	GACNNNGTC	1 cut(s)	372
Vha464I	CTTAAG	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.