Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005410

Physical Location & Seq

Genomic Coordinates Forward (+)

38187407 .. 38193041

Gene Structure 5635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGATGCTTCTGAACCCTTTAATGTCCCTGTGAATCCTGAAGCTTTGGGAATACCTGATTATTTTGATGTGATAGATACACCAATGGATTTTGGAACCATATGCAACAATCTTGAACAGGGTGGCAAGTATAATAATTCTGAGGATGTTTTCAGAGATGTTGAATACATTTGGAACAATTGTTATAAGTATAACAGTAAAGGTGACTACATTTTGGATCTTATGAGGCGGGTGAAAAAGAATTTCACTAAGTATTGGACTACAGCCGGGTTGTATAATGGACAACCAAGAGGAACTAATGGTGTTGAAAGCCCTCAAGAGATAATGGCTTCATCTGATCAGGGAAAAGTACATTTTAAAGGTGGCCAATCAAAGCAGAAAACACGAAAAGGTCATGGAAGGCATCATAAAGCGGATTGCTTATGTGCTATCTGTGTTCTAAAGCGCCGTAGAAGGGAGCGTGAGGAGAATGATCAAATTGCAAAGGGCCATGGAGCTAGTGATAATAGTCTTGCTCAAGAACTCAAGCAAGAGGAATCTTCACTTGCGGAAAGTCCAGGTGGGAATTCATCTTCGGATATGGATGGATCATTGGAGCCCAATGCAGATGCGGAGGTAGAAGAAAAAGGAGAGGATGTGAAAATGGGGGTATCCAAGCAGCGGTATGGTCCTTCAGGGGAGAAGCACGAGGAGGAGGATGATGATGATGAGGGGAATGAGGAAGAAGATAGTGACACAGAGATGAAAGATGAAGATAATGGTGAAGCACTAGAGCAGTTTGAGAAATCAAGAGAAGAGCCTAATAAACAATTACAACCGATAACAGCAGAGGTTTCCGCAGGAGTCCAAACTGATACAAACAAAGATAATACATCAATGCAACAGGAGGAAGGACTTGTAGCAGATAAGCAACCTAAGTCGCAGGAATCGCAAGAAAGGAGGCATAAGAAAGTGAAAGCATATGAAAGTCTGCAATTTGAGAATCCCATGCTTTTGGACCTATGTGGGACTCTCTTCCCTAACAATAGTAAGTCTATCTGGAGTGGACCCCATTCACTGGTTCAGCATCGCAGTTCTCGTACCAGTTCCATTCACGCAGCTATTAACATGCTCATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001047 GO:0001067 GO:0001085 GO:0001091 GO:0001094 GO:0001098 GO:0001099 GO:0001672 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008134 GO:0008150 GO:0010639 GO:0010847 GO:0031445 GO:0031452 GO:0033043 GO:0033044 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045798 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0065007 GO:0070577 GO:0097159 GO:0140030 GO:0140033 GO:1901363 GO:1902275 GO:1905268 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

374

Amino Acids

41.91

Weight (kDa)

4.92

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025 AT1G58025
fragaria_vesca	FvH4_5g28621 FvH4_5g28621
malus_domestica	MD08G1241300.v1.1 MD15G1435300.v1.1
prunus_persica	Prupe.1G578900_v2.0.a1
pyrus_communis	pycom08g20910 pycom08g20920 pycom15g38390 pycom15g38400
rosa_chinensis	RchiOBHm_Chr7g0220691
rosa_multiflora	Rmu_ssc0000189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113660 Rroxscaffold_3G00239200 Rroxscaffold_4G00318920 Rroxscaffold_4G00321600
rosa_rugosa	Rorug07G0196200 Rorug07G0196200 Rorug07G0196200
rosa_samantha	Rh7AG337000 Rh7BG327900 Rh7CG355000 Rh7DG333600
rosa_wichuraiana	Rw7G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	1057
AciI	CCGC	6 cut(s)	229, 413, 548, 611, 661, 837
AclWI	GGATC	2 cut(s)	225, 595
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	241, 565
AcuI	CTGAAG	2 cut(s)	60, 657
AfaI	GTAC	2 cut(s)	351, 1081
AfiI	CCNNNNNNNGG	3 cut(s)	454, 660, 1057
AgsI	TTSAA	3 cut(s)	116, 164, 308
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	3 cut(s)	44, 497, 1100
AluI	AGCT	3 cut(s)	44, 497, 1100
AlwI	GGATC	2 cut(s)	225, 595
AoxI	GGCC	2 cut(s)	364, 487
ApeKI	GCWGC	2 cut(s)	658, 1097
ApoI	RAATTY	2 cut(s)	241, 565
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	4 cut(s)	487, 668, 997, 1046
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	215, 244, 773
AvaII	GGWCC	3 cut(s)	668, 997, 1046
BalI	TGGCCA	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	600
BauI	CACGAG	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	670, 1109
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	2 cut(s)	337, 472
BcnI	CCSGG	1 cut(s)	268
BfaI	CTAG	2 cut(s)	498, 770
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	448
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	659, 1098
BlsI	GCNGC	2 cut(s)	660, 1099
Bme1390I	CCNGG	2 cut(s)	268, 558
Bme18I	GGWCC	3 cut(s)	668, 997, 1046
BmgT120I	GGNCC	4 cut(s)	487, 668, 997, 1046
BmiI	GGNNCC	3 cut(s)	97, 597, 1048
BmrFI	CCNGG	2 cut(s)	268, 558
BmsI	GCATC	3 cut(s)	412, 598, 1075
BpmI	CTGGAG	1 cut(s)	1060
BpuEI	CTTGAG	3 cut(s)	300, 501, 509
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 660, 1057
Bse1I	ACTGG	2 cut(s)	1062, 1083
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	5 cut(s)	10, 151, 589, 640, 703
BseLI	CCNNNNNNNGG	3 cut(s)	454, 660, 1057
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	1062, 1083
BseRI	GAGGAG	3 cut(s)	479, 704, 707
BseXI	GCAGC	2 cut(s)	670, 1109
BshFI	GGCC	2 cut(s)	366, 489
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	11, 1021
BslI	CCNNNNNNNGG	3 cut(s)	454, 660, 1057
BsmFI	GGGAC	2 cut(s)	11, 1021
BsnI	GGCC	2 cut(s)	366, 489
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	217, 337, 472, 587
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	6 cut(s)	229, 413, 548, 611, 661, 837
BspANI	GGCC	2 cut(s)	366, 489
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	1113
BspLI	GGNNCC	3 cut(s)	97, 597, 1048
BspPI	GGATC	2 cut(s)	225, 595
BspQI	GCTCTTC	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	1062, 1083
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	4 cut(s)	217, 337, 472, 587
BssSI	CACGAG	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	490
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	2 cut(s)	789, 1019
BstDEI	CTNAG	3 cut(s)	141, 249, 915
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	5 cut(s)	10, 151, 589, 640, 703
BstH2I	RGCGCY	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	4 cut(s)	220, 340, 475, 590
BstMBI	GATC	4 cut(s)	217, 337, 472, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	928
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	1111
BstSCI	CCNGG	2 cut(s)	266, 556
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	670, 1109
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	366, 489
BtgI	CCRYGG	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	1052
BtsCI	GGATG	5 cut(s)	10, 151, 589, 640, 703
BtsIMutI	CAGTG	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	1113
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	4 cut(s)	487, 668, 997, 1046
Csp6I	GTAC	2 cut(s)	350, 1080
CviAII	CATG	5 cut(s)	395, 491, 988, 1108, 1114
CviQI	GTAC	2 cut(s)	350, 1080
DdeI	CTNAG	3 cut(s)	141, 249, 915
DpnI	GATC	4 cut(s)	219, 339, 474, 589
DpnII	GATC	4 cut(s)	217, 337, 472, 587
DraI	TTTAAA	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	789, 1019
EarI	CTCTTC	2 cut(s)	789, 1019
Eco130I	CCWWGG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	668, 997, 1046
Eco57I	CTGAAG	2 cut(s)	60, 657
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	5 cut(s)	398, 494, 991, 1111, 1117
FaqI	GGGAC	2 cut(s)	11, 1021
FatI	CATG	5 cut(s)	394, 490, 987, 1107, 1113
FauI	CCCGC	1 cut(s)	222
FauNDI	CATATG	2 cut(s)	101, 961
FbaI	TGATCA	2 cut(s)	337, 472
Fnu4HI	GCNGC	2 cut(s)	659, 1098
FokI	GGATG	5 cut(s)	17, 158, 596, 647, 710
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	2 cut(s)	659, 1098
FspBI	CTAG	2 cut(s)	498, 770
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	2 cut(s)	659, 1098
GsuI	CTGGAG	1 cut(s)	1060
HaeII	RGCGCY	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	366, 489
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	5 cut(s)	398, 494, 991, 1111, 1117
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	6 cut(s)	34, 536, 843, 926, 982, 1009
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	3 cut(s)	215, 244, 773
Hpy166II	GTNNAC	1 cut(s)	1046
Hpy188I	TCNGA	5 cut(s)	13, 142, 155, 337, 577
Hpy188III	TCNNGA	7 cut(s)	38, 113, 317, 518, 789, 1039, 1114
Hpy8I	GTNNAC	1 cut(s)	1046
HpyAV	CCTTC	4 cut(s)	393, 447, 681, 884
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	5 cut(s)	105, 482, 605, 880, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	928
HpyF3I	CTNAG	3 cut(s)	141, 249, 915
Hsp92II	CATG	5 cut(s)	398, 494, 991, 1111, 1117
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	2 cut(s)	337, 472
Kzo9I	GATC	4 cut(s)	217, 337, 472, 587
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	3 cut(s)	457, 494, 595
Lsp1109I	GCAGC	2 cut(s)	670, 1109
LweI	GCATC	3 cut(s)	412, 598, 1075
MaeI	CTAG	2 cut(s)	498, 770
MaeIII	GTNAC	2 cut(s)	203, 731
MalI	GATC	4 cut(s)	219, 339, 474, 589
MboI	GATC	4 cut(s)	217, 337, 472, 587
MboII	GAAGA	8 cut(s)	531, 564, 632, 734, 737, 764, 806, 1006
MfeI	CAATTG	1 cut(s)	178
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	7 cut(s)	136, 178, 241, 477, 565, 809, 974
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	852, 1003
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	3 cut(s)	21, 357, 1104
MslI	CAYNNNNRTG	2 cut(s)	740, 1112
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	268, 558
MunI	CAATTG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	928
NciI	CCSGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	490
NdeI	CATATG	2 cut(s)	101, 961
NdeII	GATC	4 cut(s)	217, 337, 472, 587
NlaIII	CATG	5 cut(s)	398, 494, 991, 1111, 1117
NlaIV	GGNNCC	3 cut(s)	97, 597, 1048
NmuCI	GTSAC	2 cut(s)	203, 731
NspI	RCATGY	1 cut(s)	1111
PagI	TCATGA	1 cut(s)	1113
PciSI	GCTCTTC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	1075
PfeI	GAWTC	4 cut(s)	34, 536, 926, 982
PflMI	CCANNNNNTGG	1 cut(s)	1057
PkrI	GCNGC	2 cut(s)	660, 1099
PleI	GAGTC	2 cut(s)	851, 1003
PpsI	GAGTC	2 cut(s)	851, 1003
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	3 cut(s)	97, 597, 1048
PspPI	GGNCC	4 cut(s)	487, 668, 997, 1046
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	351, 1081
RsaNI	GTAC	2 cut(s)	350, 1080
RseI	CAYNNNNRTG	2 cut(s)	740, 1112
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	21, 357, 1104
SatI	GCNGC	2 cut(s)	659, 1098
Sau3AI	GATC	4 cut(s)	217, 337, 472, 587
Sau96I	GGNCC	4 cut(s)	487, 668, 997, 1046
SchI	GAGTC	2 cut(s)	852, 1003
ScrFI	CCNGG	2 cut(s)	268, 558
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	3 cut(s)	412, 598, 1075
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	3 cut(s)	668, 997, 1046
SmiMI	CAYNNNNRTG	2 cut(s)	740, 1112
SmlI	CTYRAG	3 cut(s)	315, 516, 524
SmoI	CTYRAG	3 cut(s)	315, 516, 524
Sse9I	AATT	7 cut(s)	136, 178, 241, 477, 565, 809, 974
SsiI	CCGC	6 cut(s)	229, 413, 548, 611, 661, 837
SspMI	CTAG	2 cut(s)	498, 770
StyD4I	CCNGG	2 cut(s)	266, 556
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	7 cut(s)	136, 178, 241, 477, 565, 809, 974
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	4 cut(s)	34, 536, 926, 982
Tru1I	TTAA	3 cut(s)	21, 357, 1104
Tru9I	TTAA	3 cut(s)	21, 357, 1104
TscAI	CASTG	1 cut(s)	1062
TseFI	GTSAC	2 cut(s)	203, 731
TseI	GCWGC	2 cut(s)	658, 1097
Tsp45I	GTSAC	2 cut(s)	203, 731
TspDTI	ATGAA	5 cut(s)	321, 558, 758, 765, 978
TspRI	CASTG	1 cut(s)	1062
Van91I	CCANNNNNTGG	1 cut(s)	1057
VpaK11BI	GGWCC	3 cut(s)	668, 997, 1046
XapI	RAATTY	2 cut(s)	241, 565
XceI	RCATGY	1 cut(s)	1111
XspI	CTAG	2 cut(s)	498, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.