AT1G58070

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015330
Physical Location & Seq
Forward (+)
21502905 .. 21504078
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58070.1

Sequence Viewer

Length: 855 bp
ATGGATATAGAAGAGATGGAAGGAAATAATCAAGTGGAGGAACATCATGTCGACACTTCTCGTCCTTTTAGCTCTGTTAAAGAAGCTGTTGCCATATTTGGCCAACGGATTATGCTACCGGTACAAACTCATACCATGAACTCTAAATCGGCAAGTCCTATTGCTGCTAGTCGTAGCATCAACCAGAACGCTAAACCAAGAAGCCCTGGACTCAGCCAGACCGTTAAATTGGTAATTCCTACTGCTAGTCCTAGCATCAGCCAGACTGCTAAATTGGTAAGTCCTATTGCTAGTCCTAGCATAAGCCAGACCGCTTCTTCATCTTCTTCTCCATGGAAGCAACGCTCCTTGTTGCCCCCTTCTCCTCAAGGTCCAAAAGAAGAGATCATGGATGTGTTGAAGAAGCTTGAAGCCGAGATAACGGAAACAAAGACAGAGGTGAAGATGTTGAAGGAGAGAGAATCAGAGACAGAGGTTGCTTTGGCTACTTTAAACGCAGAGCTACATAAGAACAAGTCAAAGATAGCGAAAGCCGAAGCTGATGCTGCAGGGAAGAGCGCGGCAGCCATGACGAAATCAGTTAGCTTCAAGGACACAAAAGAGAAGGAAAATGGAGAGGACCAGAGGAGGAAAGAGCTGATGAGGAAGATGCAGAAGGAGTATCCTTCATTGGCTCAGATACTTGACAGTAACAAAGGAAACAGAGATGGGTATTTTGCGAACACTAAGAAGACGAAGAAGAAGAAGAAACCTATCATTCCTCTTGTGGGAGATTTCTTCTTCTTCAAGAAGAAAGGTTCTTCGCCTGAAATATCTGGACCTCTTTACACTACCTCTTCCACCCTGCACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.23

Weight (kDa)

9.61

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58070
fragaria_vesca FvH4_6g51930
malus_domestica MD08G1240500.v1.1 MD15G1433700.v1.1
prunus_persica Prupe.1G577200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0173411
rosa_laevigata RLG00000022187
rosa_multiflora Rmu_co8519037.1_g000002 Rmu_ssc0000282.1_g000013
rosa_roxburghii Rroxscaffold_2G00078890
rosa_rugosa Rorug02G0568100
rosa_samantha Rh2AG648600 Rh2BG659200 Rh2CG624500 Rh2DG674400
rosa_wichuraiana Rw2G053240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 560
AciI CCGC 2 cut(s) 312, 560
AcoI YGGCCR 1 cut(s) 100
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 767
AgeI ACCGGT 1 cut(s) 118
AgsI TTSAA 5 cut(s) 400, 410, 451, 589, 787
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 7 cut(s) 72, 86, 406, 502, 539, 585, 637
AluI AGCT 7 cut(s) 72, 86, 406, 502, 539, 585, 637
Alw26I GTCTC 1 cut(s) 461
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 3 cut(s) 164, 545, 563
AsiGI ACCGGT 1 cut(s) 118
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 3 cut(s) 371, 619, 818
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 3 cut(s) 371, 619, 818
BalI TGGCCA 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 151, 532, 575
BccI CCATC 2 cut(s) 10, 701
BcgI CGANNNNNNTGC 2 cut(s) 524, 558
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 5 cut(s) 168, 246, 252, 291, 297
BfmI CTRYAG 1 cut(s) 546
BfuI GTATCC 1 cut(s) 672
BisI GCNGC 4 cut(s) 165, 546, 561, 564
BlsI GCNGC 4 cut(s) 166, 547, 562, 565
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 3 cut(s) 371, 619, 818
BmgT120I GGNCC 3 cut(s) 371, 619, 818
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 4 cut(s) 186, 264, 532, 639
BpiI GAAGAC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 205, 332
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 767
Bse118I RCCGGY 1 cut(s) 118
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 205, 332
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 767
BseMII CTCAG 2 cut(s) 226, 689
BseRI GAGGAG 2 cut(s) 354, 640
BseXI GCAGC 3 cut(s) 151, 532, 575
BsgI GTGCAG 1 cut(s) 830
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 118
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 767
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 332
BspACI CCGC 2 cut(s) 312, 560
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 225, 688
BspFNI CGCG 1 cut(s) 560
BspMAI CTGCAG 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 205, 332
BssMI GATC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 223, 689
Bst6I CTCTTC 4 cut(s) 6, 375, 548, 841
BstDEI CTNAG 3 cut(s) 212, 675, 726
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 560
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 546
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 3 cut(s) 151, 532, 575
BstV2I GAAGAC 1 cut(s) 737
BsuI GTATCC 1 cut(s) 672
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 397
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 371, 619, 818
Csp6I GTAC 1 cut(s) 122
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 5 cut(s) 47, 136, 333, 388, 568
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 3 cut(s) 212, 675, 726
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DraI TTTAAA 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 4 cut(s) 6, 375, 548, 841
EarI CTCTTC 4 cut(s) 6, 375, 548, 841
Eco130I CCWWGG 1 cut(s) 332
Eco47I GGWCC 3 cut(s) 371, 619, 818
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 5 cut(s) 50, 139, 336, 391, 571
FatI CATG 5 cut(s) 46, 135, 332, 387, 567
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 165, 546, 561, 564
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 4 cut(s) 165, 546, 561, 564
FspBI CTAG 5 cut(s) 168, 246, 252, 291, 297
GlaI GCGC 1 cut(s) 559
GluI GCNGC 4 cut(s) 165, 546, 561, 564
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 560
Hin1II CATG 5 cut(s) 50, 139, 336, 391, 571
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 210, 461
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 466, 678
Hpy188III TCNNGA 2 cut(s) 787, 816
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 6 cut(s) 14, 369, 445, 598, 649, 675
HpyCH4III ACNGT 2 cut(s) 223, 689
HpyCH4V TGCA 3 cut(s) 548, 652, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 3 cut(s) 212, 675, 726
Hsp92II CATG 5 cut(s) 50, 139, 336, 391, 571
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 1 cut(s) 384
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 3 cut(s) 151, 532, 575
LweI GCATC 4 cut(s) 186, 264, 532, 639
MaeI CTAG 5 cut(s) 168, 246, 252, 291, 297
MaeIII GTNAC 1 cut(s) 689
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 3 cut(s) 227, 234, 272
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 1 cut(s) 204
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 4 cut(s) 78, 225, 491, 853
MslI CAYNNNNRTG 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 1 cut(s) 545
NcoI CCATGG 1 cut(s) 332
NdeII GATC 1 cut(s) 384
NlaIII CATG 5 cut(s) 50, 139, 336, 391, 571
NmeAIII GCCGAG 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 461
PinAI ACCGGT 1 cut(s) 118
PkrI GCNGC 4 cut(s) 166, 547, 562, 565
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 3 cut(s) 371, 619, 818
PstI CTGCAG 1 cut(s) 550
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 392
SalI GTCGAC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 4 cut(s) 78, 225, 491, 853
SatI GCNGC 4 cut(s) 165, 546, 561, 564
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 3 cut(s) 371, 619, 818
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 207
SfaNI GCATC 4 cut(s) 186, 264, 532, 639
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 3 cut(s) 371, 619, 818
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 3 cut(s) 227, 234, 272
SsiI CCGC 2 cut(s) 312, 560
SspMI CTAG 5 cut(s) 168, 246, 252, 291, 297
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 223, 689
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 227, 234, 272
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 4 cut(s) 78, 225, 491, 853
Tru9I TTAA 4 cut(s) 78, 225, 491, 853
TseI GCWGC 3 cut(s) 164, 545, 563
TspDTI ATGAA 3 cut(s) 152, 309, 657
TspGWI ACGGA 2 cut(s) 121, 437
VpaK11BI GGWCC 3 cut(s) 371, 619, 818
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 5 cut(s) 168, 246, 252, 291, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.