FvH4_6g51930

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015330
Physical Location & Seq
Reverse (-)
38407276 .. 38408025
750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51930.t1

Sequence Viewer

Length: 750 bp
ATGGAGACCCAAAATCTTCAAGTCGTTCCAGTGCCACATGATTACCGCGCCAATGTTGACACTTCAAGACCCTTCAGCTCCGTCAAGGAAGCTGTTGCCGTCTTCGGAGAGCGGCTTCTCCTAGGAGAGTTCTTCTCACCATCACCATCCCCTAAACCGCCACAGCTGCCGCCATTTTACACTATGCAAGAAACAGAAACTTCTTCATCAAGGAACAAGTTTGTCATCTCACCAAGTACCAGTGCTGACCCACATAGTGAAGAAAGTGATCTTATTTTGGATAGTCTAAAGAAACTTGAGGCTGAGCTTGAGGAAACCAAGGTGGAGTTGAAGTTGCTCAAGGAGAGAGAGTCTGAAACCGAGGTGGCATTGGCAACCTTGAATGCAGAGCTTCACAAGAACATGTCCAAGTTGGCTCAGGCTGAGGCGGCCGCAGCAGGAAAGGCAGCGGCTAGTAGTGATCATCATGCTATCAGTTCGATGAGATCAAATCCGGAGGAAGCAGAGAGGAATGTCAAGAAGGATCCGTGGTCGATGATAAGGATGGAGGACTCTACCTCTTTGGCTCAGATGTTGACCATTGGTTCTCAACATGGTTATTATGGGAGTGGAGGAAAAAGAGAGAGGAATTATAAGATGATGAAGAAGAAGCCTATTGTTCCTCTACTACAGGACTTGTTTTCCTGGAAAAAAGGGTCTTCCACTCCTCTCCATGACCATATCTATTCGTCTCCAAAACTCTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.83

Weight (kDa)

6.26

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58070
fragaria_vesca FvH4_6g51930
malus_domestica MD08G1240500.v1.1 MD15G1433700.v1.1
prunus_persica Prupe.1G577200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0173411
rosa_laevigata RLG00000022187
rosa_multiflora Rmu_co8519037.1_g000002 Rmu_ssc0000282.1_g000013
rosa_roxburghii Rroxscaffold_2G00078890
rosa_rugosa Rorug02G0568100
rosa_samantha Rh2AG648600 Rh2BG659200 Rh2CG624500 Rh2DG674400
rosa_wichuraiana Rw2G053240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AccBSI CCGCTC 1 cut(s) 112
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 7 cut(s) 46, 112, 158, 170, 428, 432, 449
AclWI GGATC 2 cut(s) 518, 531
AcoI YGGCCR 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 58
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 4 cut(s) 20, 66, 331, 382
AjnI CCWGG 1 cut(s) 683
AluBI AGCT 5 cut(s) 78, 92, 166, 307, 391
AluI AGCT 5 cut(s) 78, 92, 166, 307, 391
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 2 cut(s) 518, 531
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 3 cut(s) 166, 434, 446
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 129, 135, 222
AvrII CCTAGG 1 cut(s) 121
BamHI GGATCC 1 cut(s) 523
BbsI GAAGAC 2 cut(s) 94, 690
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 153, 446, 458
BccI CCATC 3 cut(s) 148, 154, 538
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 685
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 2 cut(s) 122, 453
BfmI CTRYAG 1 cut(s) 668
BisI GCNGC 8 cut(s) 113, 167, 170, 429, 432, 435, 447, 450
BlnI CCTAGG 1 cut(s) 121
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 8 cut(s) 114, 168, 171, 430, 433, 436, 448, 451
Bme1390I CCNGG 1 cut(s) 685
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 685
BpiI GAAGAC 2 cut(s) 94, 690
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 2 cut(s) 417, 423
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 3 cut(s) 317, 323, 329
BsaJI CCNNGG 4 cut(s) 121, 318, 360, 527
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 4 cut(s) 317, 335, 347, 365
Bse1I ACTGG 2 cut(s) 29, 240
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 4 cut(s) 121, 318, 360, 527
BseGI GGATG 2 cut(s) 146, 549
BseMII CTCAG 4 cut(s) 294, 414, 431, 581
BseNI ACTGG 2 cut(s) 29, 240
BseRI GAGGAG 1 cut(s) 696
BseX3I CGGCCG 1 cut(s) 429
BseXI GCAGC 3 cut(s) 153, 446, 458
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 432
BsiSI CCGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 735
BsmBI CGTCTC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 1 cut(s) 431
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 4 cut(s) 268, 460, 485, 523
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 7 cut(s) 46, 112, 158, 170, 428, 432, 449
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 4 cut(s) 295, 415, 430, 580
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 525
BspPI GGATC 2 cut(s) 518, 531
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 2 cut(s) 29, 240
BssECI CCNNGG 4 cut(s) 121, 318, 360, 527
BssMI GATC 4 cut(s) 268, 460, 485, 523
BssT1I CCWWGG 2 cut(s) 121, 318
Bst2UI CCWGG 1 cut(s) 685
BstDEI CTNAG 4 cut(s) 303, 417, 423, 567
BstDSI CCRYGG 1 cut(s) 527
BstF5I GGATG 2 cut(s) 146, 549
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 4 cut(s) 271, 463, 488, 526
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 4 cut(s) 268, 460, 485, 523
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 4 cut(s) 166, 428, 434, 443
BstNI CCWGG 1 cut(s) 685
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 683
BstSFI CTRYAG 1 cut(s) 668
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 3 cut(s) 153, 446, 458
BstV2I GAAGAC 2 cut(s) 94, 690
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BstZI CGGCCG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 527
BtsCI GGATG 2 cut(s) 146, 549
BtsIMutI CAGTG 2 cut(s) 36, 247
CciNI GCGGCCGC 1 cut(s) 429
CfoI GCGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 237
CviAII CATG 5 cut(s) 38, 403, 467, 593, 713
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 4 cut(s) 303, 417, 423, 567
DpnI GATC 4 cut(s) 270, 462, 487, 525
DpnII GATC 4 cut(s) 268, 460, 485, 523
DraIII CACNNNGTG 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 429
EagI CGGCCG 1 cut(s) 429
EclXI CGGCCG 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 121, 318
Eco52I CGGCCG 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 683
EcoT14I CCWWGG 2 cut(s) 121, 318
ErhI CCWWGG 2 cut(s) 121, 318
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 5 cut(s) 41, 406, 470, 596, 716
FatI CATG 5 cut(s) 37, 402, 466, 592, 712
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 8 cut(s) 113, 167, 170, 429, 432, 435, 447, 450
FokI GGATG 2 cut(s) 133, 556
Fsp4HI GCNGC 8 cut(s) 113, 167, 170, 429, 432, 435, 447, 450
FspBI CTAG 2 cut(s) 122, 453
GlaI GCGC 1 cut(s) 49
GluI GCNGC 8 cut(s) 113, 167, 170, 429, 432, 435, 447, 450
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 494
HhaI GCGC 1 cut(s) 50
Hin1II CATG 5 cut(s) 41, 406, 470, 596, 716
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 2 cut(s) 58, 576
HindII GTYRAC 2 cut(s) 58, 576
HinfI GANTC 2 cut(s) 350, 551
HpaII CCGG 1 cut(s) 494
HphI GGTGA 3 cut(s) 129, 135, 222
Hpy166II GTNNAC 2 cut(s) 58, 576
Hpy188I TCNGA 3 cut(s) 107, 355, 570
Hpy188III TCNNGA 3 cut(s) 66, 494, 517
Hpy8I GTNNAC 2 cut(s) 58, 576
HpyAV CCTTC 2 cut(s) 82, 514
HpyCH4V TGCA 2 cut(s) 187, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 166, 428, 434, 443
HpyF3I CTNAG 4 cut(s) 303, 417, 423, 567
Hsp92II CATG 5 cut(s) 41, 406, 470, 596, 716
HspAI GCGC 1 cut(s) 48
Kpn2I TCCGGA 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 268, 460, 485, 523
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 8 cut(s) 42, 253, 404, 423, 507, 656, 670, 697
Lsp1109I GCAGC 3 cut(s) 153, 446, 458
MaeI CTAG 2 cut(s) 122, 453
MalI GATC 4 cut(s) 270, 462, 487, 525
MbiI CCGCTC 1 cut(s) 112
MboI GATC 4 cut(s) 268, 460, 485, 523
MboII GAAGA 8 cut(s) 8, 94, 124, 195, 272, 655, 658, 690
MflI RGATCY 1 cut(s) 523
MluCI AATT 1 cut(s) 628
MlyI GAGTC 2 cut(s) 359, 545
MroI TCCGGA 1 cut(s) 493
MspA1I CMGCKG 2 cut(s) 166, 449
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 685
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 685
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 166, 428, 434, 443
NdeII GATC 4 cut(s) 268, 460, 485, 523
NlaIII CATG 5 cut(s) 41, 406, 470, 596, 716
NlaIV GGNNCC 1 cut(s) 525
NotI GCGGCCGC 1 cut(s) 429
NspI RCATGY 1 cut(s) 406
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 683
PkrI GCNGC 8 cut(s) 114, 168, 171, 430, 433, 436, 448, 451
PleI GAGTC 2 cut(s) 358, 545
PpsI GAGTC 2 cut(s) 358, 545
PscI ACATGT 1 cut(s) 402
PsiI TTATAA 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 683
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 1 cut(s) 525
PsuI RGATCY 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 8 cut(s) 113, 167, 170, 429, 432, 435, 447, 450
Sau3AI GATC 4 cut(s) 268, 460, 485, 523
SchI GAGTC 2 cut(s) 359, 545
ScrFI CCNGG 1 cut(s) 685
SetI ASST 9 cut(s) 80, 94, 168, 309, 324, 366, 380, 393, 560
SfcI CTRYAG 1 cut(s) 668
SmlI CTYRAG 3 cut(s) 296, 308, 338
SmoI CTYRAG 3 cut(s) 296, 308, 338
Sse9I AATT 1 cut(s) 628
SsiI CCGC 7 cut(s) 46, 112, 158, 170, 428, 432, 449
SspMI CTAG 2 cut(s) 122, 453
StyD4I CCNGG 1 cut(s) 683
StyI CCWWGG 2 cut(s) 121, 318
TaqI TCGA 2 cut(s) 479, 533
TasI AATT 1 cut(s) 628
TauI GCSGC 5 cut(s) 115, 172, 431, 434, 452
TscAI CASTG 2 cut(s) 36, 247
TseI GCWGC 3 cut(s) 166, 434, 446
TspDTI ATGAA 2 cut(s) 195, 656
TspGWI ACGGA 2 cut(s) 70, 516
TspRI CASTG 2 cut(s) 36, 247
XceI RCATGY 1 cut(s) 406
XmaJI CCTAGG 1 cut(s) 121
XspI CTAG 2 cut(s) 122, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.