Prupe.1G577200_v2.0.a1

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015330
Physical Location & Seq
Forward (+)
46987114 .. 46988065
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G577200.1

Sequence Viewer

Length: 762 bp
ATGGAATTGGAAACCCAACATTCTCAGCTTCCTGAAGAAGACCCTAACAACAATTACCAAGCCAATGTTGACACCTCCAGACCCTTCCGCTCCGTCAGAGAAGCCGTGGCCATCTTTGGCGACCGCCTCCTTCTTGGAGAAATGTACTCATCCCCCAAGCCTAATGGCAACAATATTGTCCAAAGAACTCCTTCATCGTCATGGAAGTTGTTGCCGATGCCGGCTAATTATAAAGAAAGCGAAGATGTTAGCAGTTATGGTGATGAGGAGGAGAATGCAGGTGATAAAGAAGTTATGGATACTCTTAAGAAGCTGGAGGCTGAGCTTGAGGAGACAAAGGTGGAGCTGAAGTTGCTGAAGGAGAGAGAGTCTGAAACCGAGGTGGCGTTGGCCTCCTTGAACGCAGAGCTTCACAAGAACATGTCCAAGTTGGCTCAGGCTGAGGCAAATAATGCAGCAATGGCTAGCAATGTACTGCATGTGACTGCAAGATCATCGCCATTTACCGGTACCAATCATGGTTTGATGATGGAGGAAGAGAAGAACAAGAGGGAGTGGATGATAAGGATGGAGGATTCTACCTCTTTGGCTCAGATATTGAGCATTGGCACTCAGAAAAATGGCGGAGGAAAAAGAGAAAAGAAAATAATGAAGAAGAAGCCTATTGTCCCTCTTGTGCAAGATTTGTTTTTCTGGAAAAAAGGATCTTCAACTCCTCTTCGTAACCCTCTTTTTAATTCTTCTCCACAGCTCTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.55

Weight (kDa)

5.59

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58070
fragaria_vesca FvH4_6g51930
malus_domestica MD08G1240500.v1.1 MD15G1433700.v1.1
prunus_persica Prupe.1G577200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0173411
rosa_laevigata RLG00000022187
rosa_multiflora Rmu_co8519037.1_g000002 Rmu_ssc0000282.1_g000013
rosa_roxburghii Rroxscaffold_2G00078890
rosa_rugosa Rorug02G0568100
rosa_samantha Rh2AG648600 Rh2BG659200 Rh2CG624500 Rh2DG674400
rosa_wichuraiana Rw2G053240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 90
AciI CCGC 3 cut(s) 88, 124, 624
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 3 cut(s) 54, 368, 377
AfaI GTAC 3 cut(s) 146, 474, 511
AfiI CCNNNNNNNGG 1 cut(s) 506
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 2 cut(s) 400, 711
AluBI AGCT 6 cut(s) 28, 313, 325, 346, 409, 751
AluI AGCT 6 cut(s) 28, 313, 325, 346, 409, 751
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 712
AoxI GGCC 2 cut(s) 108, 390
ApeKI GCWGC 1 cut(s) 455
AsiGI ACCGGT 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 190
Asp718I GGTACC 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 272, 293
AsuNHI GCTAGC 1 cut(s) 464
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 467
BccI CCATC 3 cut(s) 119, 523, 562
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciVI GTATCC 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 1 cut(s) 456
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 511
BmsI GCATC 1 cut(s) 207
BmtI GCTAGC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 61, 335
Bpu10I CCTNAGC 2 cut(s) 435, 441
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 105, 378
BsaWI WCCGGW 1 cut(s) 506
BsaXI ACNNNNNCTCC 4 cut(s) 335, 353, 365, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse118I RCCGGY 2 cut(s) 220, 506
Bse3DI GCAATG 2 cut(s) 465, 475
BseDI CCNNGG 2 cut(s) 105, 378
BseGI GGATG 3 cut(s) 149, 564, 573
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 2 cut(s) 465, 475
BseMII CTCAG 6 cut(s) 38, 312, 432, 449, 605, 626
BseRI GAGGAG 4 cut(s) 281, 284, 344, 705
BseXI GCAGC 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 110, 392
BshNI GGYRCC 1 cut(s) 509
BshTI ACCGGT 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 221, 507
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 110, 392
Bsp143I GATC 2 cut(s) 491, 704
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 3 cut(s) 88, 124, 624
BspANI GGCC 2 cut(s) 110, 392
BspCNI CTCAG 6 cut(s) 37, 313, 433, 448, 604, 625
BspLI GGNNCC 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 1 cut(s) 712
BspT107I GGYRCC 1 cut(s) 509
BspTI CTTAAG 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 2 cut(s) 465, 475
BsrFI RCCGGY 2 cut(s) 220, 506
BssAI RCCGGY 2 cut(s) 220, 506
BssECI CCNNGG 2 cut(s) 105, 378
BssMI GATC 2 cut(s) 491, 704
Bst6I CTCTTC 2 cut(s) 531, 723
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 222, 466
BstDEI CTNAG 6 cut(s) 24, 321, 435, 441, 591, 612
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 3 cut(s) 149, 564, 573
BstKTI GATC 2 cut(s) 494, 707
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 491, 704
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 352, 452, 461
BstNSI RCATGY 2 cut(s) 424, 482
BstV1I GCAGC 1 cut(s) 467
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 110, 392
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 3 cut(s) 149, 564, 573
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 222, 466
Cfr10I RCCGGY 2 cut(s) 220, 506
Csp6I GTAC 3 cut(s) 145, 473, 510
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 4 cut(s) 201, 421, 479, 518
CviQI GTAC 3 cut(s) 145, 473, 510
DdeI CTNAG 6 cut(s) 24, 321, 435, 441, 591, 612
DpnI GATC 2 cut(s) 493, 706
DpnII GATC 2 cut(s) 491, 704
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 531, 723
EarI CTCTTC 2 cut(s) 531, 723
EciI GGCGGA 1 cut(s) 639
Eco57I CTGAAG 3 cut(s) 54, 368, 377
FaeI CATG 4 cut(s) 204, 424, 482, 521
FaiI YATR 7 cut(s) 202, 231, 258, 296, 422, 480, 519
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FaqI GGGAC 1 cut(s) 653
FatI CATG 4 cut(s) 200, 420, 478, 517
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 3 cut(s) 136, 571, 580
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 465
GluI GCNGC 1 cut(s) 456
GsuI CTGGAG 2 cut(s) 61, 335
HaeIII GGCC 2 cut(s) 110, 392
HapII CCGG 2 cut(s) 221, 507
Hin1II CATG 4 cut(s) 204, 424, 482, 521
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 2 cut(s) 368, 575
HpaII CCGG 2 cut(s) 221, 507
HphI GGTGA 2 cut(s) 272, 293
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 4 cut(s) 98, 373, 594, 615
Hpy188III TCNNGA 3 cut(s) 32, 78, 694
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 4 cut(s) 94, 140, 201, 352
HpyCH4V TGCA 5 cut(s) 278, 455, 478, 488, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 452, 461
HpyF3I CTNAG 6 cut(s) 24, 321, 435, 441, 591, 612
Hsp92II CATG 4 cut(s) 204, 424, 482, 521
KpnI GGTACC 1 cut(s) 513
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 491, 704
LmnI GCTCC 2 cut(s) 95, 343
LpnPI CCDG 8 cut(s) 45, 91, 234, 264, 299, 422, 520, 679
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 481, 722
MalI GATC 2 cut(s) 493, 706
MbiI CCGCTC 1 cut(s) 90
MboI GATC 2 cut(s) 491, 704
MflI RGATCY 1 cut(s) 704
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 4 cut(s) 5, 52, 226, 736
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 377
Mox20I TGGCCA 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 190
MscI TGGCCA 1 cut(s) 110
MseI TTAA 2 cut(s) 306, 735
MslI CAYNNNNRTG 1 cut(s) 199
Msp20I TGGCCA 1 cut(s) 110
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 2 cut(s) 221, 507
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 352, 452, 461
NaeI GCCGGC 1 cut(s) 222
NdeII GATC 2 cut(s) 491, 704
NgoMIV GCCGGC 1 cut(s) 220
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 4 cut(s) 204, 424, 482, 521
NlaIV GGNNCC 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 2 cut(s) 424, 482
PaqCI CACCTGC 1 cut(s) 269
PciI ACATGT 1 cut(s) 420
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PscI ACATGT 1 cut(s) 420
PsiI TTATAA 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 511
PsuI RGATCY 1 cut(s) 704
RsaI GTAC 3 cut(s) 146, 474, 511
RsaNI GTAC 3 cut(s) 145, 473, 510
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 2 cut(s) 306, 735
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 2 cut(s) 491, 704
SchI GAGTC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 305, 326
SmoI CTYRAG 2 cut(s) 305, 326
Sse9I AATT 4 cut(s) 5, 52, 226, 736
SsiI CCGC 3 cut(s) 88, 124, 624
SspI AATATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 465
TasI AATT 4 cut(s) 5, 52, 226, 736
TatI WGTACW 2 cut(s) 144, 472
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 2 cut(s) 306, 735
Tru9I TTAA 2 cut(s) 306, 735
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 183, 665
TspGWI ACGGA 1 cut(s) 82
Vha464I CTTAAG 1 cut(s) 305
XceI RCATGY 2 cut(s) 424, 482
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.